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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1682 fasta sequence
[TGGTATTCAACCCCCGGCAAAAGTAAATAATTGTTGTGCGTGGACTGGATTGGTGCAGAAATTTGGTCTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTTTTCTGAAGTGGCCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCTCGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGAACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATACGATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATCGAAGGCACAATGTGCGGCCGCATTCATCAGTGCACGGGTGCCGGGGTGCGTTGTGACGCCTCACTTTCGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGTTTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCTGGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGAA-CGAA-GATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACACACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAA-GAAA-CTCCCTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTCCT-GGGTGTACGAGAAAGCGCAGGAACGAGCCAACAGTTTCAACATCACCGGATTATCATACCGGCTCGTGCAGGGCGTGTTGAAAAATATTATCCCGGCCGTGGCCAGCACCAATGCGGTAATTGCGGCCGCCTGTGCCACGGAGGTGTTCAAGATTGCTTCCAGCTGCTGTGAACCGTCGAACAATTACATGGTGTTCAATGACGTGGATGGCATCTACACTTATACGTACGAAGCGGAAAAGCGGTCCGATTGCTTGGCATGTAGCCAGGTGCCGAGACCGGTGGACATCAAGGATCCTAATGGAATGACGCTGCAGGATCTGATTCAGCTGTTGTGCGAAAACCCTGAGTTTCAAATGAAAAGTCCAGGACTGACCGCCGTGCTGGAAGGGAAAAACAAAACCCTGTACATGGGTACAGTCAAAAGCATTGAGGAGGCAACGAAGGGAAATCTAACGATGTCACTCAGCGAGCTCGGACTGAAGGATGGTCAAGAAATAATGGTAGCCGATATCACCACACCGAATACGATCCTTATTAAGCTTAAATTTCAACCCAACGAGGTAGAAATGTCATAAATAGTGCAGGGAAGCTCTTTATAAAGGTCAATATGCAAATGAAGCGATGAATTTGATTTTGGAATAAAAATAGATTGTTACACGATTTAAAAAA]
[+] EMBL CNS08OLE [TGGTATTCAACCCCCGGCAAAAGTAAATAATTGTTGTGCGTGGACTGGATTGGTGCAGAAATTTGGTCTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTTTTCTGAAGTGGCCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCT ]
[+] EMBL CNS090PB [ TTGGTGC GAAATTTGGTCTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTTTTCTGAAGTGGTCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCTCGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGAACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATACGATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATCGAAGGCACAATGTGCGGCCGCATTCATCAGTGCACGGGTGCCGGGGTGCGTTGTGACGCCTCACTTTCGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGTTTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCTGGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGAA CGAA GATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACACACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAA GAAA CTCCCTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTTCTGGGGTGTACGAGAAAG ]
[-] EMBL CNS090PC [ CGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGAACCGAAGGATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACACACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAAGGAAACCTCCTTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTCCT GGGTGTACGAGAAAGCGCAGGAACGAGCCAACAGTTTCAACATCACCGGATTATCATACCGGCTCGTGCAGGGCGTGTTGAAAAATATTATCCCGGCCGTGGCCAGCACCAATGCGGTAATTGCGGCCGCCTGTGCCACGGAGGTGTTCAAGATTGCTTCCAGCTGCTGTGAACCGTCGAACAATTACATGGTGTTCAATGACGTGGATGGCATCTACACTTATACGTACGAAGCGGAAAAGCGGTCCGATTGCTTGGCATGTAGCCAGGTGCCGAGACCGGTGGACATCAAGGATCCTAATGGAATGACGCTGCAGGATCTGATTCAGCTGTTGTGCGAAAACCCTGAGTTTCAAATGAAAAGTCCAGGACTGACCGCCGTGCTGGAAGGGAAAAACAAAACCCTGTACATGGGTACAGTCAAAAGCATTGAGGAGGCAACGAAGGGAAATCTAACGATGTCACTCAGCGAGCTCGGACTGAAGGATGGTCAAGAAATAATGGTAGCCGATATCACCACACCGAATACGATCCTTATTAAGCTTAAATTTCAACCCAACGAGGTAGAAATGTCATAAATAGTGCAGGGAAGCTCTTTATAAAGGTCAATATGCAAATGAAGCGATGAATTTGATTTTG ]
[-] EMBL CNS08OLF [ GTGCATCGACAAAACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACACACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAA GGAA AACTCTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTCCT GGGTGTACGAGAAAGCGCAGGAACGAGCCAACAGTTTCAACATCACCGGATTATCATACCGGCTCGTGCAGGGCGTGTTGAAAAATATTATCCCGGCCGTGGCCAGCACCAATGCGGTAATTGCGGCCGCCTGTGCCACGGAGGTGTTCAAGATTGCTTCCAGCTGCTGTGAACCGTCGGACAATTACATGGTGTTCAATGACGTGGATGGCATCTACACTTATACGTACGAAGCGGAAAAGCGGTCCGATTGCTTGGCATGTAGCCAGGTGCCGAGACCGGTGGACATCAAGGATCCTAATGGAATGACGCTGCAGGATCTGATTCAGCTGTTGTGCGAAAACCCTGAGTTTCAAATGAAAAGTCCAGGACTGACCGCCGTGCTGGAAGGGAAAAACAAAACCCTGTACATGGGTACAGTCAAAAGCATTGAGGAGGCAACGAAGGGAAATCTAACGATGTCACTCAGCGAGCTCGGACTGAAGGATGGTCAAGAAATAATGGTAGCCGATATCACCACACCGAATACGATCCTTATTAAGCTTAAATTTCAACCCAACGAGGTAGAAATGTCATAAATAGTGCAGGGAAGCTCTTTATAAAGGTCAATATGCAAATGAAGCGATGAATTTGATTTTGGAATAAAAATAGATTGTTACACGATTTAAAAAA]
[-] EMBL CNS08QP3 [ ATGGTCAAGAAATAATGGTAGCCGATATCCCCACACCGAATACGATCCTTATTAAGCTTAAATTTCAACCCAACGAGGTAGAAATGTCAT ]
consensusID : consensus_7083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence
[GTGGACTGGATTGGTGCAGAAATTGGACTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTGTTCTGAAGTGGTCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCTCGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGAACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATACGATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATCGAAGGCACAATGTGCGGCCGCATTCATCAGTGCGTTGTGACGCCTCACTTTTGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGTTTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCTGGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGGAACCGAAGGATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCT]
[+] EMBL BX626755 [GTGGACTGGATTGGTGCAGAAATTGGACTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTGTTCTGAAGTGGTCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCTCGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGAACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATACGATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATCGAAGGCACAATGTGCGGCCGCATTCATCAGTGCGTTGTGACGCCTCACTTTTGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGTTTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCTGGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGGAACCGAAGGATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7083#0 TGGTATTCAACCCCCGGCAAAAGTAAATAATTGTTGTGCGTGGACTGGATTGGTGCAGAA 60
consensus_7083#1 ---------------------------------------GTGGACTGGATTGGTGCAGAA 21
*********************
consensus_7083#0 ATTTGGTCTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCC 120
consensus_7083#1 ATT-GGACTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCC 80
*** ** *****************************************************
consensus_7083#0 AATCTCGACTTTTCTGAAGTGGCCAATTGGAGCATCCACCAAAAACATTACGCCGAATTT 180
consensus_7083#1 AATCTCGACTGTTCTGAAGTGGTCAATTGGAGCATCCACCAAAAACATTACGCCGAATTT 140
********** *********** *************************************
consensus_7083#0 GCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTAC 240
consensus_7083#1 GCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTAC 200
************************************************************
consensus_7083#0 CATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAA 300
consensus_7083#1 CATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAA 260
************************************************************
consensus_7083#0 AATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCT 360
consensus_7083#1 AATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCT 320
************************************************************
consensus_7083#0 CGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGA 420
consensus_7083#1 CGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGA 380
************************************************************
consensus_7083#0 ACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATAC 480
consensus_7083#1 ACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATAC 440
************************************************************
consensus_7083#0 GATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATC 540
consensus_7083#1 GATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATC 500
************************************************************
consensus_7083#0 GAAGGCACAATGTGCGGCCGCATTCATCAGTGCACGGGTGCCGGGGTGCGTTGTGACGCC 600
consensus_7083#1 GAAGGCACAATGTGCGGCCGCATTCATCAGTGC----------------GTTGTGACGCC 544
********************************* ***********
consensus_7083#0 TCACTTTCGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGT 660
consensus_7083#1 TCACTTTTGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGT 604
******* ****************************************************
consensus_7083#0 TTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCT 720
consensus_7083#1 TTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCT 664
************************************************************
consensus_7083#0 GGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGG 780
consensus_7083#1 GGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGG 724
************************************************************
consensus_7083#0 AA--CGAAG-ATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCG 837
consensus_7083#1 GAACCGAAGGATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCG 784
* ***** **************************************************
consensus_7083#0 ACTGCACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACA 897
consensus_7083#1 ACTGCACCCTGGATCT-------------------------------------------- 800
****************
consensus_7083#0 CACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAAGAAAC 957
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 TCCCTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTCCTGGGTGTA 1017
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 CGAGAAAGCGCAGGAACGAGCCAACAGTTTCAACATCACCGGATTATCATACCGGCTCGT 1077
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 GCAGGGCGTGTTGAAAAATATTATCCCGGCCGTGGCCAGCACCAATGCGGTAATTGCGGC 1137
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 CGCCTGTGCCACGGAGGTGTTCAAGATTGCTTCCAGCTGCTGTGAACCGTCGAACAATTA 1197
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 CATGGTGTTCAATGACGTGGATGGCATCTACACTTATACGTACGAAGCGGAAAAGCGGTC 1257
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 CGATTGCTTGGCATGTAGCCAGGTGCCGAGACCGGTGGACATCAAGGATCCTAATGGAAT 1317
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 GACGCTGCAGGATCTGATTCAGCTGTTGTGCGAAAACCCTGAGTTTCAAATGAAAAGTCC 1377
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 AGGACTGACCGCCGTGCTGGAAGGGAAAAACAAAACCCTGTACATGGGTACAGTCAAAAG 1437
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 CATTGAGGAGGCAACGAAGGGAAATCTAACGATGTCACTCAGCGAGCTCGGACTGAAGGA 1497
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 TGGTCAAGAAATAATGGTAGCCGATATCACCACACCGAATACGATCCTTATTAAGCTTAA 1557
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 ATTTCAACCCAACGAGGTAGAAATGTCATAAATAGTGCAGGGAAGCTCTTTATAAAGGTC 1617
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 AATATGCAAATGAAGCGATGAATTTGATTTTGGAATAAAAATAGATTGTTACACGATTTA 1677
consensus_7083#1 ------------------------------------------------------------
consensus_7083#0 AAAAA 1682
consensus_7083#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||