These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1023 fasta sequence [GAAGCACTCACTACAAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACACACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTCCTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTGGAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCAGAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGAAATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTCAACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATT-TTGTCTCGGTAGGGTAACATT-CTGATGTTCTCTGCTCCAACTTTTCATC-TTTTCTGTTGTTTTAGTTTCATCAG-TTTCAACGAACACAT-AAAACAAACCTT-GTGT-TTCGGTGAACCAGGCGAG-AGTTTGTGTCTAGTCAT-AAAGCTTAGGTACTACTGC-AAT-GGAAGAT-CCAGTTC-ATTC-AATGGTTTTTAACTTCGAAAAAAGAACAC-ATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTAAAGCAAATGATATAAAAAAGAGCAAACGAATTTCGACGAACTTATGGATCATTAGCAAAATTGATTTTTTTTACGTTAGTAACGTTATCTCGTATCGTGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGAAAAAGGGTGAACGTGTAATTTTACAAGAAAAGAAATATATAGTTGCATTATTGATAATCAAAAAAAACCCACGCGTCCGCGG] [+] EMBL BX609053 [GAAGCACTCACTACAAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACACACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTCCTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTGGAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCAGAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGAAATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTCAACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATT TTGTCTCGGTAGGGTAACATT CTGATGTTCTCTGCTCCAACTTTTCATC TTTTCTGTTGTTTTAGTTTCATCAG TTTCAACGAACACAT AAAACAAACCTT GTGT TTCGGTGAACCAGGCGAG AGTTTGTGTCTAGTCAT AAAGCTTAGGTACTACTGC AAT GGAAGAT CCAGTTC ATTC AATGGTTTTTAACTTCGAAAAAAGAACAC ATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTAAAGCAAATGATATAAAAAAGAGCAAACGAATTTCGACGAACTT ] [+] EMBL BX618037 [GAAGCACTCACTACAAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACACACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTCCTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTGGAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCAGAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGAAATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTCAACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATT TTGTCTCGGTAGGGTAACATT CTGATGTTCTCTGCTCCAACTTTTCATC TTTTCTGTTGTTTTAGTTTCATCAG TTTCAACGAACACAT AAAACAAACCTT GTGT TTCGGTGAACCAGGCGAG AGTTTGTGTCTAGTCAT AAAGCTTAGGTACTACTGC AAT GGAAGAT CCAGTTC ATTC AATGGTTTTTAACTTCGAAAAAATAACACAATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTTAAG ] [+] EMBL BX619115 [ AAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACACACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTCCTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTGGAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCAGAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGAAATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTCAACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATTNTTGTCTCGGTAGGGTAACATTCCTGATGTTCTCTGCTCCAACTTTTCATCTTTTTCTGTTGTTTTAGTTTNATCAGTTTTCAACGAACACATAAAAACAAACCTTGGTGTNTTCGGTGAACCAGGCGAGNAGTNTGTGTCTAGTCATAAAAGCTAGGGTACTACTGCAAATGGGAAGATCCCAGTTCAATTCNAATGGgt ] [-] EMBL BM620726 [ T CTGATGTTCTCTGCTCCAACTTTTCATC TTTTCTGTTGTTTTAGTTTCATCAG TTTCAACGAACACAT AAAACAAACCTT GTGT TTCGGTGAACCAGGCGAG AGTTTGTGTCTAGTCAT AAAGCTTAGGTACTACTGC AAT GGAAGAT CCAGTTC ATTC AATGGTTTTTAACTTCGAAAAAAGAACAC ATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTAAAGCAAATGATATAAAAAAGAGCAAACGAATTTCGACGAACTTATGGATCATTAGCAAAATTGATTTTTTTTACGTTAGTAACGTTATCTCGTATCGTGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGAAAAAGGGTGAACGTGTAATTTTACAAGAAAAGAAATATATAGTTGCATTATTGATAATCAAAAAAAACCCACGCGTCCGCGG] [+] EMBL BM635797 [ ccgCTGC AAT GGAAGAT CCAGTTC ATTC AATGGTTTTTAACTTCGAAAAAAGAACAC ATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTAAAGCAAATGATATAAAAAAGAGCAAACGAATTTCGACGAACTTATGGATCATTAGCAAAATTGATTTTTTTTACGTTAGTAACGTTATCTCGTATCATGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACATTTCGAGAGAGAAAAAGGGTGAACGTGTAATTTTACAAG ] consensusID : consensus_7100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [TACGTTCATAANAGCCTTACGGTTACTACCTGCCAAATGGAAGATCCAGTTCATGTCAATGGCTTTTCAACCTTCGCCATCAACAGNCACACATGCTTTGAAAGCTTGCTTCTTGAAGCCATCAAATCCACTTGTTCNAGCGATTTGAGAGACTCGAAAGCTTAAAGCAAATGATATCGAACAACAGAGCACAACGAATTTCGACGAACTTATGGATCATTAGCAAAACTTGATTCTCTTTTTACGTTAGTAACGTTATCTCGTATCATGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGAAAAAGGGTGAAACGTGTAATTTTAACAAGAAAAGAAATATATAGTTGCATTATTGATAATCAATCGATCGGGAAAAGAGAAAAAAAAAAAAAAAAATCATCGTGCCGATTCTTG] [-] EMBL BX469837 [TACGTTCATAANAGCCTTACGGTTACTACCTGCCAAATGGAAGATCCAGTTCATGTCAATGGCTTTTCAACCTTCGCCATCAACAGNCACACATGCTTTGAAAGCTTGCTTCTTGAAGCCATCAAATCCACTTGTTCNAGCGATTTGAGAGACTCGAAAGCTTAAAGCAAATGATATCGAACAACAGAGCACAACGAATTTCGACGAACTTATGGATCATTAGCAAAACTTGATTCTCTTTTTACGTTAGTAACGTTATCTCGTATCATGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGAAAAAGGGTGAAACGTGTAATTTTAACAAGAAAAGAAATATATAGTTGCATTATTGATAATCAATCGATCGGGAAAAGAGAAAAAAAAAAAAAAAAATCATCGTGCCGATTCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7100#0 GAAGCACTCACTACAAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACA 60 consensus_7100#1 ------------------------------------------------------------ consensus_7100#0 CACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTC 120 consensus_7100#1 ------------------------------------------------------------ consensus_7100#0 CTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTG 180 consensus_7100#1 ------------------------------------------------------------ consensus_7100#0 GAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCA 240 consensus_7100#1 ------------------------------------------------------------ consensus_7100#0 GAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGA 300 consensus_7100#1 ------------------------------------------------------------ consensus_7100#0 AATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTC 360 consensus_7100#1 ------------------------------------------------------------ consensus_7100#0 AACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATTTTGTCTCGGTAGGGTAA 420 consensus_7100#1 ------------------------------------------------------------ consensus_7100#0 CATTCTGATGTTCTCTGCTCCAACTTTTCATCTTTTCTGTTGTTTTAGTTTCATCAGTTT 480 consensus_7100#1 ------------------------------------------------------------ consensus_7100#0 CAACGAACACATAAAACAAACCTTGTGTTTCGGTGAACCAGGCGAGAGTTTGTGTCTAGT 540 consensus_7100#1 --------------------------------------------TACGTTCATAAN-AGC 15 *** * ** consensus_7100#0 CATAAAGCTTAGGTACTACTGCAATGGAAGATCCAGTTCAT-TCAATGGTTTTTAA--CT 597 consensus_7100#1 CTTACGGTT--ACTACCTGCCAAATGGAAGATCCAGTTCATGTCAATGGCTTTTCAACCT 73 * ** * * *** ******************* ******* **** * ** consensus_7100#0 TCGA----AAAAAGAACACATG-TTTGAAAGTT--CTTCTTGAAGCCATCAAATCCA-TT 649 consensus_7100#1 TCGCCATCAACAGNCACACATGCTTTGAAAGCTTGCTTCTTGAAGCCATCAAATCCACTT 133 *** ** * ******* ******** * ********************** ** consensus_7100#0 GTTCTAGCGATTTGAGAGA-TCGAAAGCTTAAAGCAAATGATAT---AAAAAAGAGCA-A 704 consensus_7100#1 GTTCNAGCGATTTGAGAGACTCGAAAGCTTAAAGCAAATGATATCGAACAACAGAGCACA 193 **** ************** ************************ * ** ****** * consensus_7100#0 ACGAATTTCGACGAACTTATGGATCATTAGCAAAA-TTGATTTT--TTTTACGTTAGTAA 761 consensus_7100#1 ACGAATTTCGACGAACTTATGGATCATTAGCAAAACTTGATTCTCTTTTTACGTTAGTAA 253 *********************************** ****** * ************** consensus_7100#0 CGTTATCTCGTATCGTGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCT 821 consensus_7100#1 CGTTATCTCGTATCATGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCT 313 ************** ********************************************* consensus_7100#0 GTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTG 881 consensus_7100#1 GTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTG 373 ************************************************************ consensus_7100#0 AGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGA 941 consensus_7100#1 AGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGA 433 ************************************************************ consensus_7100#0 AAAAGGGTGAA-CGTGTAATTTTA-CAAGAAAAGAAATATATAGTTGCATTATTGATAAT 999 consensus_7100#1 AAAAGGGTGAAACGTGTAATTTTAACAAGAAAAGAAATATATAGTTGCATTATTGATAAT 493 *********** ************ *********************************** consensus_7100#0 CAAAAAAAACCCACGCGTCCGCGG------------------------------ 1023 consensus_7100#1 CAATCGATCGGGAAAAGAGAAAAAAAAAAAAAAAAATCATCGTGCCGATTCTTG 547 *** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||