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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1244 fasta sequence
[CCGAAAGAAGACAAGCAAATCAAGCCAACAATTTCGGTCTCGGAATTTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTAGCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACAT-CCCGGACCCGATCTTTA-CCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGGCGGGCGCTGAAGTACAAAAACACCTGCCTGTTTGGCGGTGGGAAGAAGCGCAAGCAGCAGGACGATTTGGAGTACGGGGTGGAAATCGTGATCGCCACGCCCGGCCGGCTGATTGACTTTCTGTCGAGCAACCAGACGAACCTGCGCCGCTGCTCGTACCTGGTGCTGGACGAGGCGGATCGTATGCTGGACATGGGGTTCGAGCCGCAGATACGCACCATCATTGAGCAGATCCGTCCCGACCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATCGTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTGGGATCGCTGAAGCTGGCGGCGAACCACAACATCCTGCAGATAATCGACGTTTGCCAGGAGTACGAGAAGGAGTCGAAGCTGAGCATACTGCTGCGCGAGATAATGGCCGAGAAGGAGTGCAAAACGATCATCTTCATCGAGACGAAGAAGCGCGTCGATGATATCACGCGCAAGGTGAAGCGTGACGGTTGG]
[+] EMBL BM649606 [CCGAAAGAAGACAAGCAAATCAAGCCAACAATTTCGGTCTCGGAATTTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTAGCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACATCCCCGGACCCGATCTTTACCCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGG ]
[+] EMBL BM584164 [ ccgAAGCAAATCAAGCCAACAATTTCGGTCTCGGAATTTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTAGCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACAT CCCGGACCCGATCTTTA CCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGG ]
[+] EMBL BM642370 [ ccgCAATTTCGGTCTCGGAATTTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTAGCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACAT CCCGGACCCGATCTTTA CCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGA ]
[+] EMBL BX608280 [ CATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGGCGGGCGCTGAAGTACAAAAACACCTGCCTGTTTGGCGGTGGGAAGAAGCGCAAGCAGCAGGACGATTTGGAGTACGGGGTGGAAATCGTGATCGCCACGCCCGGCCGGCTGATTGACTTTCTGTCGAGCAACCAGACGAACCTGCGCCGCTGCTCGTACCTGGTGCTGGACGAGGCGGATCGTATGCTGGACATGGGGTTCGAGCCGCAGATACGCACCATCATTGAGCAGATCCGTCCCGACCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATCGTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTGGGATCGCTGAAGCTGGCGGCGAACCACAACATCCTGCAGATAATCGACGTTTGCCAGGAGTACGAGAAGGAGTCGAAGCTGAGCATACTGCTGCGCGAGATAATGGCCGAGAAGGAGTGCAAAACGATCATCTTCATCGAGACGAAGAAGCGCGTCGATGATATCACGCGCAAGGTGAAGCGTGACGGTTGG]
consensusID : consensus_7105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[ATCCCCCGAGGTTATCTCGGAATTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGTGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGTGGNGCCGGTGGTGTGACTGCCTGGGTAGCCGGTACGAAATCGGCAAACTGCAAACTGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCTGTACCGTTCCAAGGCAACGTACCTGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACATCCCGGACCCGATCTTTACCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGGCTCGGGGGAAAACACTTGTTCCTAACCCTGATTCCCCCGCCCTGATAACACATTCGATCAGCAGCGCGGGCTTCGCCGTGGGCGACGGGCCGAATCGCGCTGATTACTAGCGCCAAGCGCCGAACTACGCANAGAATCA]
[+] EMBL AL932113 [ATCCCCCGAGGTTATCTCGGAATTTGTGGGATTTTCCATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGTGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGTGGNGCCGGTGGTGTGACTGCCTGGGTAGCCGGTACGAAATCGGCAAACTGCAAACTGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGCTGGACCCGATCGTGCGGGAACCTGTACCGTTCCAAGGCAACGTACCTGGCGGTCCGAGCGCGAGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACATCCCGGACCCGATCTTTACCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGGCTCGGGGGAAAACACTTGTTCCTAACCCTGATTCCCCCGCCCTGATAACACATTCGATCAGCAGCGCGGGCTTCGCCGTGGGCGACGGGCCGAATCGCGCTGATTACTAGCGCCAAGCGCCGAACTACGCANAGAATCA]
consensusID : consensus_7105#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGCGGACGCGTGGGTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGGCGGGCGCTGAAGTACAAAAACACCTGCCTGTTTGGCGGTGGGAAGAAGCGCAAGCAGCAGGACGATCTGGAGTACGGGGTGGAAATCGTGATCGCCACGCCCGGTCGGCTGATTGACTTTCTGTCGAGCAACCAGACGAACCTGCGCCGCTGCTCGTACCTGGTGCTGGACGAGGCGGATCGTATGCTGGACATGGGGTTCGAGCCGCAGATACGCACCATCATTGAGCAGATCCGTCCCGATCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATCGTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTGGGATCGCAGAAGCTGGCGGCGAACCACAACATCCTGCAGATAATCGACGTTTGCC]
[+] EMBL BM656552 [CCGCGGACGCGTGGGTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGCCCACGCCGATCCAGGCCCAGGGCTGGCCGATTGCACTGTCCGGCCGGGATATGGTCGGCATCGCGAAAACAGGCTCGGGGAAAACACTGTCCTACCTGATCCCCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGCTGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTGGGCGGGCGCTGAAGTACAAAAACACCTGCCTGTTTGGCGGTGGGAAGAAGCGCAAGCAGCAGGACGATCTGGAGTACGGGGTGGAAATCGTGATCGCCACGCCCGGTCGGCTGATTGACTTTCTGTCGAGCAACCAGACGAACCTGCGCCGCTGCTCGTACCTGGTGCTGGACGAGGCGGATCGTATGCTGGACATGGGGTTCGAGCCGCAGATACGCACCATCATTGAGCAGATCCGTCCCGATCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATCGTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTGGGATCGCAGAAGCTGGCGGCGAACCACAACATCCTGCAGATAATCGACGTTTGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7105#0 CCGAAAGAAGACAAGCAAATCAAGCCAACAATTTCGGTCTCGGAATTTTGTGGGATTTTC 60
consensus_7105#2 ------------------------------------------------------------
consensus_7105#1 ------------------------------------------------------------
consensus_7105#0 CATCGGTAAAACTTGTTCCTACAGCGTACGAAAGGGGTGTGTGTGCCTCGGTTCCTTTCA 120
consensus_7105#2 ------------------------------------------------------------
consensus_7105#1 ------------------------------------------------------------
consensus_7105#0 TCGCCATACCAGCAACGGAACGCGGAACCCAGCAGTATTTGCAGCGTGAAAGGATGAGCC 180
consensus_7105#2 ------------------------------------------------------------
consensus_7105#1 ------------------------------------------------------------
consensus_7105#0 GCAATGGAAGGCGTCGCAGTCGAAGTAGAAGTCCCCGGGGCCGGGGTGGACTGCCGGGTA 240
consensus_7105#2 ------------------------------------------------------------
consensus_7105#1 ------------------------------------------------------------
consensus_7105#0 GCCGGTACGAAATCGGCAAACTGCAAACGCTCCGACCCGTCCAGTGGTCCCAGGTGAAGC 300
consensus_7105#2 ------------------------------------------------------------
consensus_7105#1 ------------------------------------------------------------
consensus_7105#0 TGGACCCGATCGTGCGGGAACCGTACCGTTCCAAGGCAACGTACCGGCGGTCCGAGCGCG 360
consensus_7105#2 ------------------------------------------------------------
consensus_7105#1 ------------------------------------------------------------
consensus_7105#0 AGATCTCCGAATGGCGCCGATCGAAGGAAATCACCACCAAGGGCCACGACATCCCGGACC 420
consensus_7105#2 ---------------------------------------------------CCGCGGACG 9
consensus_7105#1 -------------------------------------------------ATCCCCCGAGG 11
* * **
consensus_7105#0 CGATCTTTACCTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACG 480
consensus_7105#2 CG-----TGGGTTCGAAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACG 64
consensus_7105#1 TTATCTCGGAATTTGTGGGATTT--TCCATCGGTAAAACTTGTTCCTACAGCGTACGAAA 69
** * * * *** ** * ** * *
consensus_7105#0 CCGGCTTTACCACGCCCACGCCGATCCAGGCC-CAGGGCTGGCCGATTGCACTGTCCGGC 539
consensus_7105#2 CCGGCTTTACCACGCCCACGCCGATCCAGGCC-CAGGGCTGGCCGATTGCACTGTCCGGC 123
consensus_7105#1 GGGGTGTGTGTGCCTCGGTTCCTTTCATCGCCATACCAGCAACGGAACGCGGAACCCAGC 129
** * * * ** ** *** * * ** ** ** **
consensus_7105#0 CGGGATATGGTCGGCATCGCGAAAACAGGC--TCGGGGAAAACACTGTCCTACCTGATCC 597
consensus_7105#2 CGGGATATGGTCGGCATCGCGAAAACAGGC--TCGGGGAAAACACTGTCCTACCTGATCC 181
consensus_7105#1 AGTATTTGCAGCGTGAAAGTGATGAGCCGCAATGGAAGGCGTCGCAGTCGAAGTAGAAGT 189
* * ** * * ** * ** * * * * * *** * **
consensus_7105#0 CCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGC 657
consensus_7105#2 CCGCCCTGATACACATCGATCAGCAGCCGCGGCTTCGCCGTGGCGACGGGCCGATCGCGC 241
consensus_7105#1 CC-CCGTGGNGCCGGTGGTGTGACTGCCTGGG--TAGCCGGTACGA--AATCGG-CAAAC 243
** ** ** * * * * *** ** * **** *** ** * *
consensus_7105#0 TGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTG 717
consensus_7105#2 TGATACTAGCGCCAACGCGCGAGCTAGCGCAGCAAATCAAACAGGTGGCGGACGACTTTG 301
consensus_7105#1 TGCAAACTGCTCCGACCCGTCCAGTGGTCC--CAGGTGAAGCTGGACCCGATCGTGCGGG 301
** * ** ** ** ** * * * ** * ** * ** ** ** *
consensus_7105#0 GGCGGGCGCTGAAGTACAAAAAC--ACCTGCCTGTTTGGCGGTGGGA------AGAAGCG 769
consensus_7105#2 GGCGGGCGCTGAAGTACAAAAAC--ACCTGCCTGTTTGGCGGTGGGA------AGAAGCG 353
consensus_7105#1 AACCTGTACCGTTCCAAGGCAACGTACCTGGCGGTCCGAGCGCGAGATCTCCGAATGGCG 361
* * * * * *** ***** * ** * * * ** * ***
consensus_7105#0 CAAGCAGCAGGACGATTTGGAGTACGGGGTG-GAAATCGTGATCGCCACGCCCGG--CCG 826
consensus_7105#2 CAAGCAGCAGGACGATCTGGAGTACGGGGTG-GAAATCGTGATCGCCACGCCCGG--TCG 410
consensus_7105#1 CCGATCGAAGGA-AATCACCACCAAGGGCCACGACATCCCGGACCCGATCTTTACCTTCG 420
* * **** ** * * *** ** *** * * * * **
consensus_7105#0 GCTGATT-GACTTTCTGTCGAGCAAC-CAGACGAACCTGCGC-CGCTGCTCGTACCTGGT 883
consensus_7105#2 GCTGATT-GACTTTCTGTCGAGCAAC-CAGACGAACCTGCGC-CGCTGCTCGTACCTGGT 467
consensus_7105#1 AAGAGTCCGGCTTCCCGGCGGAAATCATTGACGAGCTGCGGTACGCCGGCTTTACCACGC 480
* * *** * * ** * * ***** * * *** * **** *
consensus_7105#0 GCTGGACGAGGCGGATCGTATGCTGGACATGGGGTT--CGAGCCGCAGATACGCACCATC 941
consensus_7105#2 GCTGGACGAGGCGGATCGTATGCTGGACATGGGGTT--CGAGCCGCAGATACGCACCATC 525
consensus_7105#1 CCACGCCGATCCAGGCCCAGGGCTGCCGATTGCACTGTCCGGCCG-GGATATG-GTCGGC 538
* * *** * * * **** ** * * * **** **** * * *
consensus_7105#0 ATTGAGCAGATCCGTCCCGACCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATC 1001
consensus_7105#2 ATTGAGCAGATCCGTCCCGATCGGCAGACGCTGATGTGGTCGGCCACGTGGCCCGACATC 585
consensus_7105#1 ATCGCGAAAACAGGGCTCGGG-GGAAAACACTTGTTCCTAACCCTGATTCCCCCGCCCTG 597
** * * * * * * ** ** * ** ** * * * **** * *
consensus_7105#0 GTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTG--GGATCGC 1059
consensus_7105#2 GTGGCCCGCCTCGTGAAGGACTATCTGAAGGACTACGCGCAGATCAATGTG--GGATCGC 643
consensus_7105#1 ATAACACATTCGATCAGCAGC------GCGGGCTTCGCCGTGGGCGACGGGCCGAATCGC 651
* * * * * * ** ** *** * * * * * * *****
consensus_7105#0 TGAAGCTGGCGGCG--AACCACAACATCCTGCAGATAATCGACGTTTGCCAGGAGTACGA 1117
consensus_7105#2 AGAAGCTGGCGGCG--AACCACAACATCCTGCAGATAATCGACGTTTGCC---------- 691
consensus_7105#1 GCTGATTACTAGCGCCAAGCGCCGAACTACGCANAGAATCA------------------- 692
* *** ** * * * *** * ****
consensus_7105#0 GAAGGAGTCGAAGCTGAGCATACTGCTGCGCGAGATAATGGCCGAGAAGGAGTGCAAAAC 1177
consensus_7105#2 ------------------------------------------------------------
consensus_7105#1 ------------------------------------------------------------
consensus_7105#0 GATCATCTTCATCGAGACGAAGAAGCGCGTCGATGATATCACGCGCAAGGTGAAGCGTGA 1237
consensus_7105#2 ------------------------------------------------------------
consensus_7105#1 ------------------------------------------------------------
consensus_7105#0 CGGTTGG 1244
consensus_7105#2 -------
consensus_7105#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||