These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 883 fasta sequence [CCGCGATAGCGCCATCGTCAATGGTGCGGAGGATGACGATGACGACGACGACGAGGAGGATGATGATGACAGCGACGACGACGAAGACGTCGAGGATGAGGAGGAAGATGATGATGACGATGATGAGGAGGATGACGATGAGGACGACGATGAGGAGGACGAGGAAGACGAAGATGTCAAGCAGCCTAAAGCCAAGCAGGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAACGCCAAGGCCGCGAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAAGAAGGGTGGCATGCGTACCCTCCAGGACGGGCTAATGGTGGAGGACCTGAAGGTTGGCAATGGGCCGGAGGCGAAGCCGGGCAAGAAGATTGCCGTGTACTACGAGGGTCGCCTGAAGTCTAACAACAAGGTGTTCGACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGTCAAGGGCTGGGATTTGGGCGTCGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCC-GCCGG-TCATCCCGCCCTGCAG-TACGCTCGTGTTTGAGGTC-GAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTAC-TACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAAAACAAAAAAGGGGGCCCCCTCTAGCGGATCCCCGCCTTTGTTACGCGTGGATTGCGACGGTTATAGCCTCCTTCTATAAGTCGCCCTTTAAATTTTAATTTTAGTGGCCCGGGCTTTTTTACAACCCTCTCTGAATT] [+] EMBL BM599981 [CCGCGATAGCGCCATCGTCAATGGTGCGGAGGATGACGATGACGACGACGACGAGGAGGATGATGATGACAGCGACGACGACGAAGACGTCGAGGATGAGGAGGAAGATGATGATGACGATGATGAGGAGGATGACGATGAGGACGACGATGAGGAGGACGAGGAAGACGAAGATGTCAAGCAGCCTAAAGCCAAGCAGGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAACGCCAAGGCCGCGAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAAGAAGGGTGGCATGCGTACCCTCCAGGACGGGCTAATGGT ] [+] EMBL BM634086 [ ccgGAGGAGGAAGATGATGATGACGATGATGAGGAGGATGACGATGAGGACGACGATGAGGAGGACGAGGAAGACGAAGATGTCAAGCAGCCTAAAGCCAAGCAGGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAACGCCAAGGCCGCGAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAAGAAGGGTGGCATGCGTACCCTCCAGGACGGGCTAATGGTGGAGGACCTGAAGGTTGGCAATGGGCCGGAGGCGAAGCCGGGCAAGAAGATTGCCGTGTACTACGAGGGTCGCCTGAAGTCTAACAACAAGGTGTTCGACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGTCAAGGGCTGGGATTTGGGCGTCGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCC GCCGG TCATCCCGCCCTGCAG TACGCTCGTGTTTGAGGTC GAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTAC TACTAAAAATAAACACTTATCCTTGAGTACAATGT ] [+] EMBL BM617931 [ ccgCGACGATGAGGAGGACGAGGAATACGAATATGTCATGCAGCCTAAAGACAAGCACGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAACACCAAGGCCGTTAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAATAAAGGTGGCATGCGTACCCTCCATGACGGGCTAATGGTGGAGGACCTGAAGGTTGGCTATGGGCCGGAGGCGAAGCCGGGCAAGAAGATTGCCGTGTACTACGAGGGTCGCCTGAAGTCTAACAACAAGGTGTTCGACAGCACCAACAAGGGCCCGGGCCTGAAGTTCCCGCTCGGTCGCGGCGAAATGGCCAAGGGCTGAGATTTGGGCGTCCCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGTACGAAGGGTAGCCCTTCCGGTTCATCCCGCCCTGCAGTTACGCTCGCGTTTGAGGTCTCAGCTGAAAAAGGTGTTCTAATGTGGTTAGAGAGAGCGCGTACGTTGCGGGTGTTTACCTTTATCAGGGAACTTTATATTACCTTACATACTACAAATAAACCCTTATCCTTGAGTACCATGCCAAACAAAAACAAAAAAGGGGGCCCCCTCTAGCGGATCCCCGCCTTTGTTACGCGTGGATTGCGACGGTTATAGCCTCCTTCTATAAGTCGCCCTTTAAATTTTAATTTTAGTGGCCCGGGCTTTTTTACAACCCTCTCTGAATT] [+] EMBL AGA282047 [ ATCCCGCCCTGCAG TACGCTCGTGTTTGAGGTC GAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTAC TACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAAAAAAAAAA ] [-] EMBL AGA280348 [ G TACGCTCGTGTTTGAGGTC GAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTAC TACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAA ] consensusID : consensus_7111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [TTCGACCGCGGCGCTCCTTCTTCTCCTTGTACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGTCAAGGGCTGGGATTTGGGCGTNGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCCGCCGGTCATCCCGCCCTGCAGTACGCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAGNNNNNNNNNATATTACATTACTACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAAAAAAA] [-] EMBL AGA281279 [TTCGACCGCGGCGCTCCTTCTTCTCCTTGTACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGTCAAGGGCTGGGATTTGGGCGTNGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCATCCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCCGCCGGTCATCCCGCCCTGCAGTACGCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACGTTGCGGGTGTTTACATTTATAGNNNNNNNNNATATTACATTACTACTAAAAATAAACACTTATCCTTGAGTACAATGTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7111#0 CCGCGATAGCGCCATCGTCAATGGTGCGGAGGATGACGATGACGACGACGACGAGGAGGA 60 consensus_7111#1 ------------------------------------------------------------ consensus_7111#0 TGATGATGACAGCGACGACGACGAAGACGTCGAGGATGAGGAGGAAGATGATGATGACGA 120 consensus_7111#1 ------------------------------------------------------------ consensus_7111#0 TGATGAGGAGGATGACGATGAGGACGACGATGAGGAGGACGAGGAAGACGAAGATGTCAA 180 consensus_7111#1 ------------------------------------------------------------ consensus_7111#0 GCAGCCTAAAGCCAAGCAGGCCAAGCTGGCCAATGACGGCAAGGCCGCCGTAAACGGCAA 240 consensus_7111#1 ------------------------------------------------------------ consensus_7111#0 CGCCAAGGCCGCGAAGGAAGCGCCCAAGAAGCAGGAACAGCAGCAGAAGAAGGGTGGCAT 300 consensus_7111#1 ------------------------------------------------------------ consensus_7111#0 GCGTACCCTCCAGGACGGGCTAATGGTGGAGGACCTGAAGGTTGGCAATGGGCCGGAGGC 360 consensus_7111#1 ------------------------------------------------------------ consensus_7111#0 GAAGCCGGGCAAGAAGATTGCCGTGTACTACGAGGGTCGCCTGAAGTCTAACAACAAGGT 420 consensus_7111#1 -----------------------------------TTCGACCGCGGCGCTCCTTCTTCTC 25 *** * * * * * consensus_7111#0 GTTCGACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGT 480 consensus_7111#1 CTTGTACAGCACCAACAAGGGCCCGGGCCTGAAGTTCACGCTCGGTCGCGGTGAAGTGGT 85 ** ******************************************************* consensus_7111#0 CAAGGGCTGGGATTTGGGCGTCGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCAT 540 consensus_7111#1 CAAGGGCTGGGATTTGGGCGTNGCCGGCATGAAGGTGGGCGGCAAGCGGCGACTGGTCAT 145 ********************* ************************************** consensus_7111#0 CCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCCGCCGGTCATCCCGCCCTGCAGTAC 600 consensus_7111#1 CCCGCACAAGCTGGCGTACGGCACGAAGGGCAGCCCGCCGGTCATCCCGCCCTGCAGTAC 205 ************************************************************ consensus_7111#0 GCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACG 660 consensus_7111#1 GCTCGTGTTTGAGGTCGAGCTGAAGAAGGTGTTCTAAGGGGGCTAGAGAGAGCGCGCACG 265 ************************************************************ consensus_7111#0 TTGCGGGTGTTTACATTTATAAGGGAACTTTATATTACATTACTACTAAAAATAAACACT 720 consensus_7111#1 TTGCGGGTGTTTACATTTATAGNNNNNNNNNATATTACATTACTACTAAAAATAAACACT 325 ********************* ***************************** consensus_7111#0 TATCCTTGAGTACAATGTAAAAAAAAAACAAAAAAGGGGGCCCCCTCTAGCGGATCCCCG 780 consensus_7111#1 TATCCTTGAGTACAATGTAAAAAAAAAAAAA----------------------------- 356 **************************** ** consensus_7111#0 CCTTTGTTACGCGTGGATTGCGACGGTTATAGCCTCCTTCTATAAGTCGCCCTTTAAATT 840 consensus_7111#1 ------------------------------------------------------------ consensus_7111#0 TTAATTTTAGTGGCCCGGGCTTTTTTACAACCCTCTCTGAATT 883 consensus_7111#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||