These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence [CCGCGGACGCGTGGGGTGCGTTTCCTTTGTGGCCGGGACGTTTCGAGGAGGGAGGTGTTTGCGAACCATCTTCGTGATCTTTTTCGATGGTAAACCATGGTGAAGTGGCTTGGAGCAGCGTTGAGTGAGTTCCTTTTTGAGCAAGTGACGATTGGCGTTGTTTGTGCAACGGGCAGGTTGGTTTGCGGTGTAACGGGTGATGATGCTGTTTGACTTGTCCTCTTTGTATAAAAAAGAAAAACTCGGAAAGGAACAATAGAAGGGAACGAAAATGACGAACACATAGTAAGTTTAGCTGTTTTTTGAATCCCAGTTTCAATTTATTTTGCAGGAGGAAAAATAGAGAATGTATTATCTCATGTGCGATGCTATTCTAC-GGGAAAGAGCTACTTCAAATTGTCCTCCACACTAGTTTACTTCAGAAAATTGTTCAAAAATCATCCAGTATCGAGCAATGTTAAAACAAAACTATTCAAAACCAACGCGGTTGAGAGCTGAAGAAGTATAAACGAGCGTTGTACCGAGTACAGAACAGCGAATAAATATCAAAACAGATTCTTATACTTCAAAGACAATATTTTGCGACTTTTTTTCGGATAACTCATAGGCTACAATAGTAATATCACAGCTGCAGTTCACACTAAACCAATTTGCACAACGCATCGGAACTCAATTTTCTCGGTCAAGCTAAGCCTATTTTCAGTCCAGATGCGCACACCCGGAGTGCAGTTAGCAATGCAGCGATGAAAGGAACGTAAAAAGAAACATAAACAGTTGATTCCAACAAGCAGTGTTTTTTTATTGTATCATAGTAACAATAGAATGTTTAAA] [+] EMBL BM614796 [CCGCGGACGCGTGGGGTGCGTTTCCTTTGTGGCCGGGACGTTTCGAGGAGGGAGGTGTTTGCGAACCATCTTCGTGATCTTTTTCGATGGTAAACCATGGTGAAGTGGCTTGGAGCAGCGTTGAGTGAGTTCCTTTTTGAGCAAGTGACGATTGGCGTTGTTTGTGCAACGGGCAGGTTGGTTTGCGGTGTAACGGGTGATGATGCTGTTTGACTTGTCCTCTTTGTATAAAAAAGAAAAACTCGGAAAGGAACAATAGAAGGGAACGAAAATGACGAACACATAGTAAGTTTAGCTGTTTTTTGAATCCCAGTTTCAATTTATTTTGCAGGAGGAAAAATAGAGAATGTATTATCTCATGTGCGATGCTATTCTAC GGGAAAGAGCTACTTCAAATTGTCCTCCACACTAGTTTACTTCAGAAAATTGTTCAAAAATCATCCAGTATCGAGCAATGTTAAAACAAAACTATTCAAAACCAACGCGGTTGAGAGCTGAAGAAGTATAAACGAGCGTTGTACCGAGTACAGAACAGCG ] [+] EMBL BM633936 [ ccgGTAAGTTTAGCTGTTTTTTGAATCCCAGTTTCAATTT GTTTGCAGGAGGAAAAATAGAGAATGTATTATCTCATGTACGATGCTATTCCACGGGGAAAGAGCTACTTCAAATTGTCCTCCACACTAGTTTACTTCAGAAAATTGTTCAAAAATCATCCAGTATCGAGCAATGTTAAAACAAAACTATTCAAAACCAACGCGGTTGAGAGCTGAAGAAGTATAAACGAGCGTTGTACCGAGTACAGAACAGCGAATAAATATCAAAACAGATTCTTATACTTCAAAGACAATATTTTGCGACTTTTTTTCGGATAACTCATAGGCTACAATAGTAATATCACAGCTGCAGTTCACACTAAACCAATTTGCACAACGCATCGGAACTCAATTTTCTCGGTCAAGCTAAGCCTATTTTCAGTCCAGATGCGCACACCCGGAGTGCAGTTAGCAATGCAGCGATGAAAGGAACGTAAAAAGAAACATAAACAGTTGATTCCAACAAGCAGTGTTTTTTTATTGTATCATAGTAACAATAGAATGTTTAAA] consensusID : consensus_7116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 662 fasta sequence [TGCTCGAGGCAAGAATCGGCACGAGGGGNTGTGACTGCGTGTGATAGTGCGTCGTGCTGTGCATTTTCCATCAAAAAAGTTACTAAAAACGCACCATTTTGCTACAAATTTTCCCTATTTTGGAAACTCACGTCACGCACTACATCAGGTGAACGCATACTCGCACCAACACCAC-ACCCTCCCC-AA-AACCCACTTTTCGCGGCTAGCTGT-TGTATAATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCTGCAGTGCAA-GGTTTACGTGGGCAATTTGGGCTCGTCGGC-GTC-GAAGCACGAGATCGAAAGTGCGTTCGGC-AA-GTATGGCCCGCTGCGGAACGTCTGGGTGGCTCGCAATCCTCCCGGTTTCGCCTTCGTAGAGTTCGAGGATAAGCGTGATGCGGAGGACGCAGTTCGCTCGCTGGATGGAACACGATGCTGCGGAACGCGTATCCGGGTGGAGATGTCTTCTGGCCGCTCGCGACGTGACGAACGCACCCGCCGACCCCGCCGCTCGTACAGATCCCGCAGCCGCAGCATGAGCCGTGAGCGCGATCGCGACCGTCGCAGCCGCAGTGGATCTCGCGACCGGCGCTAAACACGGGAAGGAGAGGGACGCTTTTTTTTGGGGGACGTGAGACAC] [+] EMBL BX466290 [TGCTCGAGGCAAGAATCGGCACGAGGGGNTGTTACTGCGTGTGATAGTGCGTCGTGCTGTGCATTTTCCATCAAAAAAGTTACTAAAAACGCACCATTTTGCTACAAATTTTCCCTATTTTGGAAACTCACGTCACGCACTACATCAGGTGAACGCATACTCGCACCAACACCACGACCCTCCCCGAAGAACCCACTTTTCGCGGCTAGCTGTATGTATAATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCTGCAGTGCAAGGGTTTACGTGGGCAATTTGGGCTCGTCGGCGGTCGGAAGCACGAGATCGAAAGTGCGTTCGGCGAAGGTATGGCCCGCTGg ] [+] EMBL BM601954 [ ccggCTGCGTGTGATAGTGCGTCGTGCTGTGCATTTTCCATCAAAAAAGTTACTAAAAACGCACCATTTTGCTACAAATTTTCCCTATTTTGGAAACTCACGTCACGCACTACATCAGGTGAACGCATACTCGCACCAACACCAC ACCCTCCCC AA AACCCACTTTTCGCGGCTAGCTGT TGTATAATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCTGCAGTGCAA GGTTTACGTGGGCAATTTGGGCTCGTCGGC GTC GAAGCACGAGATCGAAAGTGCGTTCGGC AA GTATGGCCCGCTGCGGAACGTCTGGGTGGCTCGCAATCCTCCCGGTTTCGC ] [+] EMBL BM597959 [ ccgTGCGTGTGATAGTGCGTCGTGCTGTGCATTTTCCATCAAAAAAGTTACTAAAAACGCACCATTTTGCTACAAATTTTCCCTATTTTGGAAACTCACGTCACGCACTACATCAGGTGAACGCATACTCGCACCAACACCAC ACCCTCCCC AA AACCCACTTTTCGCGGCTAGCTGT TGTATAATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCTGCAGTGCAA GGTTTACGTGGGCAATTTGGGCTCGTCGGC GTC GAAGCACGAGATCGAAAGTGCGTTCGGC AA GTATGGCCCGCTGCGGAACGTCTGGGTGGCTCGCAATCCTCCCGGTTTCGCCTTCGTAGAGTTCGAGGATAAGCGTGATGCGGAGGACGCAGTTCGCTCGCTGGATGGAACACGATGCTGCGGAACGCGTATCCGGGTGGAGATGTCTTCTGGCCGCTCGCGACGTGACGAACGCACCCGCCGACCCCGCCGCTCGTACAGATCCCGCAGCCGCAGCATGAGCCGTGAGCGCGATCGCGACCGTCGCAGCCGCAGTGGATCTCGCGACCGGCGCTAAACACGGGAAGGAGAGGGACGCTTTTTTTTGGGGGACGTGAGACAC] consensusID : consensus_7116#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [CCGCCCACGCGTCCGCTTTCAAACCATACAATACCCGAAACTAGCTGAGAACTTTGTAGTTCAAGCAATTGAAAAAAACGCAAGAAAACAGCGCTCCGTAGAACGACCCCGGAGAATAGACACGCAATTTTGTTCGACCAATCTCGAAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTCACCTTCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGAAGACAGCAAATGTCATGTCTTCTGTTCCATTTCCTCCACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAATCCTCCCAATGCTATTCCGCGCCAAGTATGCTTTCTTTCATGCCCTTTTAATGCTCCCAGGAGCGGTACGAGCGTGCGTGTGATGGCTGAGAGGGGACGAACGAGTGTCCCTCGGGGGGACCCTTC] [+] EMBL BM634793 [CCGCCCACGCGTCCGCTTTCAAACCATACAATACCCGAAACTAGCTGAGAACTTTGTAGTTCAAGCAATTGAAAAAAACGCAAGAAAACAGCGCTCCGTAGAACGACCCCGGAGAATAGACACGCAATTTTGTTCGACCAATCTCGAAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTCACCTTCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGAAGACAGCAAATGTCATGTCTTCTGTTCCATTTCCTCCACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAATCCTCCCAATGCTATTCCGCGCCAAGTATGCTTTCTTTCATGCCCTTTTAATGCTCCCAGGAGCGGTACGAGCGTGCGTGTGATGGCTGAGAGGGGACGAACGAGTGTCCCTCGGGGGGACCCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7116#1 ------------------------------------------------------------ consensus_7116#0 CCGCGGACGCGTGGGGTGCGTTTCCTTTGTGGCCGGGACGTTTCGAGGAGGGAGGTGTTT 60 consensus_7116#2 ------------------------------------------------------------ consensus_7116#1 --------------------TGCTCGA-GGCAAGAATCGGCACGAGGGGNTGTGACTGCG 39 consensus_7116#0 GCGAACCATCTTCGTGATCTTTTTCGATGGTAAACCATGGTGAAGTGGCTTGGAGCAGCG 120 consensus_7116#2 ------------------------------------------------------------ consensus_7116#1 TGTGATAGTGCGTCGTGCTGTGCATTTTCC-ATCAAAAAAGTTACTAAAAACGCACCATT 98 consensus_7116#0 T-TGAGTGAGTTCCTTTTTGAGCAAGTGACGATTGGCGTTGTTTGTGCAA-CGGGCAGGT 178 consensus_7116#2 ------------------------------------------------CCGCCCACGCGT 12 * * * consensus_7116#1 TTGCTACAAATTTTCCCTATTTTGGAA--ACTCACGTCACGCACTACATCAGGTGAACGC 156 consensus_7116#0 TGGTTTGCGGTGTAACGGGTGATGATGCTGTTTGACTTGTCCTCTTTGTATAAAAAAGAA 238 consensus_7116#2 CCGCTTTCAAACCATACAATACCCGAA--ACT--AGCTGAGAACTTTGTAGTTCAAGCAA 68 * * * * ** * * consensus_7116#1 ATACTCGCACC--AACACCACACCCTCCCCAAAACC-----CACTTTTCGCGGCTAGCTG 209 consensus_7116#0 AAACTCGGAAAGGAACAATAGAAGGGAACGAAAATGACGAACACATAGTAAGTTTAGCTG 298 consensus_7116#2 TTGAAAAAAACGCAAGAAAACAGCGCTCCGTAGAACGACCCCGGAGAATA-GACACGCAA 127 * ** * * * * * * * * ** consensus_7116#1 TTGTAT-AATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCT 268 consensus_7116#0 TTTTTTGAATCCCAGTTTCAATTTATTTTGCAGGA-GGAAAAATAGAGAATGTATTATCT 357 consensus_7116#2 TTTTGTTCGACCAATCTCGAAGCGAGAGCGCGTGA--ACGCCCTGAAGAAGATGAAGTCG 185 ** * * * * ** * * * * consensus_7116#1 GCAGTGCAAGGTT----TACGTGG----GCAATTTGGGCTCGTCGGCGTCGAAGCACGAG 320 consensus_7116#0 CATGTGCGATGCTATTCTACGGGAAAGAGCTACTTCAAATTGTCCTCCACACTAGTTTAC 417 consensus_7116#2 ATAGAGCGCCACC---------------GTTACGAGAACTCGCACTACGCCGACGATGAC 230 * ** * * * * * * consensus_7116#1 ATCGAAAGTGCGTTCGGCAAGTATGGCCCGCTGCGGAACGTCTGGGTGG-----CTCGCA 375 consensus_7116#0 TTCAGAAAATTGTTCAAAAATCATCCAGTATCGAGCAATGTTAAAACAAAACTATTCAAA 477 consensus_7116#2 GACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAG-TAAGCCTG 289 * * **** * * * * * * consensus_7116#1 ATCCTCCCGGTTTCGCCTTCGTAGAGTTCGAGGATAAGCGTGATGCGGAGGAC------G 429 consensus_7116#0 ACCAACGCGGTTGAGAGCTGAAGAAGTATAA--ACGAGCGTTGTACCGAGTACAGAACAG 535 consensus_7116#2 TCCCGCCTGATGCGGCATTCACC---TTCAA--CCATCCTTCACCCCAAGGGCG----AA 340 * * * * * * * * * * * ** * consensus_7116#1 CAG-TTCGCTCGCTGGATGGAACACGATGCTGCGGAACGCGTATCCGGGTGGAGATGTCT 488 consensus_7116#0 CGA-ATAAATATCAAAACAGATTCTTATACTTCAAAGACAATATTTTGC--GACTTTTTT 592 consensus_7116#2 CGGCTTTAATCCGGAGAGAAGACAGCAAATGTCATGTCTTCTGTTCCAT----TTCCTCC 396 * * * * * * * * * consensus_7116#1 TCTGGCCGCTCGCG-ACGTGACGAACGCACCCGCCGA----CCCCGCCGCTCGTACAGAT 543 consensus_7116#0 TCGGATAACTCATA-G-GCTACAATAGTAAT-ATCAC----AGCTGCAGTTCACACTAAA 645 consensus_7116#2 ACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAAT 456 * * * * * * * * * * * * * consensus_7116#1 CCCGCAGCCGC-AGCATGAGCCGTGAGCGCGATCGCGACCGTCGCAGCCGCAGTGGATCT 602 consensus_7116#0 CC--AATTTGC-ACAACGCATCG-GAACTCAATTTTCTCGGTCA-AGCTAAGCCTATTTT 700 consensus_7116#2 CCTCCCAATGCTATTCCGCGCCAAGTATGCTTTCTTTCATGCC----CTTTTAATGCTCC 512 ** ** * * * * * * * * * * consensus_7116#1 CGCGACCGGCGC-TAAACACGGGAAGGAG--AGGGACGCTTTTTTTTGGGGGACGTGAGA 659 consensus_7116#0 CAGTCCAGATGCGCACACCCGGAGTGCAGTTAGCAATGCAGCGATGAAAGGAACGTAAAA 760 consensus_7116#2 CAGGAGCGGTACGAGCGTGCGTGTGATGGCTGAGAGGGGACGAACGAGTGTCCCTCGGGG 572 * * * ** * * * * consensus_7116#1 CAC--------------------------------------------------------- 662 consensus_7116#0 AGAAACATAAACAGTTGATTCCAACAAGCAGTGTTTTTTTATTGTATCATAGTAACAATA 820 consensus_7116#2 GGACCCTTC--------------------------------------------------- 581 consensus_7116#1 ----------- consensus_7116#0 GAATGTTTAAA 831 consensus_7116#2 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||