These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1905 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGCACAGAGTGGCACCGCCACAACGGGGAGCGCCCTGTCGTTTCGCTCGCAGATCTGCTTGACTTTCATACATTCGCAGGTAACTTGCTCAGCGCACGGAGCAACGGAGTGCAGTGAAAGAATCAGAGAAACAGAGAGAGAAAAAAGTGAACCATAACAAACAAAACAAAAAATCCCACATCCACCCACCCACAGCCCTACTGGTGGGTGCCGCACGAGCGGGCTTGAGAGGTAGGGGCGCGCGCGCGCTCGAAATTTCGCTGTCACCGCGGGGCCCCCGCACGAGGTGGGGAGTCAGATCTTTGGTGGCGCGATTCGATTGTGCGCCATTTGTGCGCTGGCCAGCAGCAGCAGCAGCAAACGTAAGACACAGTGAACACCCCTGCCCCACGATCAAACCGCTCAAACGGGCGAAGTGTGCGCCCGCGAGACGAAGCGAAAAGCAAATAGAAATCGAACCGTCCCGGGCGGTAAGCGGGGGTCGGGAGCACCCAAAAACAACAACAACAAAAAGGAGAACAATAATAAT---AACAACAACAACAACAACGAGTTACTTCCGTGCTGCCGAATTTCGA---AGCAGTAGCCAGCAACAGAATGAAGGTGTTACGGGAGAAGATATCGAAAATGGCTGGAGGAGTGCAGCAAGCCATCGTGTGGTTTAAAGCCGGCGGCATCGTCAGCCCGATGCTGCTCATCTACGTACTTCACATGCTCTGGCCCGAGTTTCGCCCGTTCAGCATACTGTTTGTGATTGCGATCGGGTTCCTGTGGGACCGGCCGGCCGGCCAGCAAGTGGCGGCCCCCTCCGTAACCGCCGGCTCCCCGCTGGCCGAGCTCGGGGCGAAGGTGTGGGCGCTGCGCACGACCCGCCCGCTCAGCATGGTGGCGGGCAGTGTGGCCGGCTGCCTCACCTACATCTACCTGGTGTGCTACGTGCTGCCCCTGTGGCTGTCGTTGGGCGTCGCCGGGCTGGTCGTGTGCTGGGATCGGTTCGGCGTGCCCGGTGGTCCGCTCAGCATTGCGCCGAGTTTGCACGATACGCTGCAGCAGGAGCAGCAGGAAATGGACGAGTTTGTGCCGGAGCTGACGGAGGTGAGCCGCGTGCTGCTGCAAG-GGTCGGTGAGCAGGGCGCGGACACGACACCGCTCGCCGACGGGTTCGCCGCAGCGGCCGGTGGCCGCGGGAACAGCGCGGAGGAGGACGAGGAGCAGTACCTGCGGACGCTCATCCCGGAGGCGACCAGCAACGATTTCGAGTCGGCCGAGCTGAGCGGCTCCAGCAGCGACGAGCTGTTCTGCCCCGAGGGCCCGGCGGTGCGGAAGGCGGGTCGGGCGCACGGCCGGCCGGGCGAGCAGCAGCCGATCGAGTTCAAGAGCAGCCACTTTAACGCGAACAGCTCGTCCGACTCGGACGACAACATGTCGCGGGGGCTCAACTTTAACGACGACGAGGACGACGCGGACGGCGCGTCCCGGCGACCGGCGGCCAAAGGG---AGCAGCAGCAGCAGCAGCAGGCAGCAGCCGACTGGTGAGGCGATGCTGATGATGAGCGCCACCAGCCTGGCTAGCAACGTGCTGGTCGACACGGTGTACCGGCGTCTGCTGGACGCGGGCGCCCTGCACCAGCAGCAGCAGCCATCGCCGCACCATAGTATTCTTCAGTCGGTTGCCTCGCTCGGCAGCACGATACAGGCGCTCCGGGGGCAGACGGTGCAGGAGGAGGGCACCGATGACGAATCGACCGACGCGGACGAGGACAGTGAGTTTGAAATGCTCAACTCGGAGGAGCTGAACAACTTATGAGCACGTGGTGGCGCTTCCGAGGATTGTTAGAAGACATGTTAGGGAGAGAAGGAAAGAGAGATAGA] [+] EMBL BM600679 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGCACAGAGTGGCACCGCCACAACGGGGAGCGCCCTGTCGTTTCGCTCGCAGATCTGCTTGACTTTCATACATTCGCAGGTAACTTGCTCAGCGCACGGAGCAACGGAGTGCAGTGAAAGAATCAGAGAAACAGAGAGAGAAAAAAGTGAACCATAACAAACAAAACAAAAAATCCCACATCCACCCACCCACAGCCCTACTGGTGGGTGCCGCACGAGCGGGCTTGAGAGGTAGGGGCGCGCGCGCGCTCGAAATTTCGCTGTCACCGCGGGGCCCCCGCACGAGGTGGGGAGTCAGATCTTTGGTGGCGCGATTCGATTGTGCGCCATTTGTGCGCTGGCCAGCAGCAGCAGCAGCAAACGTAAGACACAGTGAACACCCCTGCCCCACGATCAAACCGCTCAAACGGGCGAAGTGTGCGCCCGCGAGACGAAGCGAAAAGCAAATAGAAATCGAACCGTCCCGGGCGGTAAGCGGGGGTCGGGAGCACCCAAAAACAACAACAACAAAAAGGAGAACAATAATAATAACAACAACAACAACAACAACGAGTTACTTCCGTGCTGCC ] [+] EMBL BM590742 [ ccgCAGTGAACACCCCTGCCCCACGATCAAACCGCTCAAACGGGCGAAGTGTGCGCCCGCGAGACGAAGCGAAAAGCAAATAGAAATCGAACCGTCCCGGGCGGTAAGCGGGGGTCGGGAGCACCCAAAAACAACAACAACAAAAAGGAGAACAATAATAATAACAACAACAACAACAACAACGAGTTACTTCCGTGCTGCCGAATTTCGA AGCAGTAGCCAGCAACAGAATGAAGGTGTTACGGGAGAAGATATCGAAAATGGCTGGAGGAGTGCAGCAAGCCATCGTGTGGTTTAAAGCCGGCGGCATCGTCAGCCCGATGCTGCTCATCTACGTACTTCACATGCTCTGGCCCGAGTTTCGCCCGTTCAGCATACTGTTTGTGATTGCGATCGGGTTCCTGTGGGACCGGCCGGCCGGCCAGCAAGTGGCGGCCCCCTCCGTAACCGCCGGCTCCCCGCTGGCCGAGCTCGGGGCGAAGGTGTGGGCGCTGCGCACGACCCGCCCGCTCAGCATGGTGGCGGGCAGTGTGGCCGGCTGCCTCACCTACATCTACCTGGTGTGCTACGTGCT ] [+] EMBL BM633462 [ AGGAGAACAATAATAAT AACAACAACAACAACAACGAGTTACTTCCGTGCTGCCGAATTTCGAAGCAGCAGTAGCCAGCAACAGAATGAAGGTGTTACGGGAGAAGATATCGAAAATGGCTGGAGGAGTGCAGCAAGCCATCGTGTGGTTTAAAGCCGGCGGCATCGTCAGCCCGATGCTGCTCATCTACGTACTTCACATGCTCTGGCCCGAGTTTCGCCCGTTCAGCATACTGTTTGTGATTGCGATCGGGTTCCTGTGGGACCGGCCGGCCGGCCAGCAAGTGGTGGCCCCCTCCGCAACCGCCGGCTCCCCGCTGGCCGAGCTCGGGGCGAAGTTGTGGGCGCTGCGCACGACCCGCCCGCTCAGCATGGTGGCGGGCAGTGTGGCCGGCTGCCTCACCTACACCTACCTGGTGTGCTACGTGCTGCCCCTGTGGCTGTCGTTGGGCGTCGCCGGGCTGGTCGTGTGCTGGGATCGGTTCGGCGTGCCCGGTGGTCCGCTCAGCATTGCGCCGAGTTTGCACGATACGCTGCAGCAGGAGCAGCAGGAAATGGACGAGTTTGTGCCGGAGCTGACGGAGGTGAGCCGCGTGCTGCTGCAAG GGTCGGTGAGCAGGGCGCGGACACGACAC ] [+] EMBL BM633416 [ ccGATCGGTTCGGCGTGCCCGGTGGTCCGCTCAGCATTGCGCCGAGTTTGCACGATACGCTGCAGCAGGAGCAGCAGGAAATGGACGAGTTTGTGCCGGAGCTGACGGAGGTGAGCCGCGTGCTGCTGCAGGAGGTCGGTGAGCAGGGCGCGGACACGACACCGCTCGCCGACGGGTTCGCCGCAGCGGCCGGTGGCCGCGGGAACAGCGCGGAGGAGGACGAGGAGCAGTACCTGCGGACGCTCATCCCGGAGGCGACCAGCAACGATTTCGAGTCGGCCGAGCTGAGCGGCTCCAGCAGCGACGAGCTGTTCTGCCCCGAGGGCCCGGCGGTGCGGAAGGCGGGTCGGGCGCACGGCCGGCCGGGCGAGCAGCAGCCGATCGAGTTCAAGAGCAGCCACTTTAACGCGAACAGCTCGTCCGACTCGGACGACAACATGTCGCGGGGGCTCAACTTTAACGACGACGAGGACGACGCGGACGGCGCGTCCCGGCGACCGGCGGCCAAAGGG AGCAGCAGCAGCAGCAGCAGGCAGCAGCCGACTGGTGAGGCGATGCTGATGATGAGCGCCACCAGCCTGGCTAGCAACGTGCTGGTCGACACGGTGTACCGGCGTCTGCTGGACGCGGGCGCCCTGCACCAGCAGCAGCAGCCATCGCCGCACCATAGTATTCTTCAGTCGGTTG ] [+] EMBL BM600423 [ ccgCCGGAGGCGACCAGCAACGATTTCGAGTCGGCCGAGCTGAGCGGCTCCAGCAGCGACGAGCTGTTCTGCCCCGAGGGCCCGGCGGTGCGGAAGGCGGGTCGGGCGCACGGCCGGCCGGGCGAGCAGCAGCCGATCGAGTTCAAGAGCAGCCACTTTAACGCGAACAGCTCGTCCGACTCGGACGACAACATGTCGCGGGGGCTCAACTTTAACGACGACGAGGACGACGCGGACGGCGCGTCCCGGCGACCGGCGGCCAAAGGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCAGCCGACTGGTGAGGCGATGCTGATGATGAGCGCCACCAGCCTGGCCAGCAACGTGCTGGTCGACACGGTGTACCGGCGTCTGCTGGACGCGGGCGCCCTGCACCAGCAGCAGCAGCCATCGCCGCACCATAGTATTCTTCAGTCGGTTGCCTCGCTCGGCAGCACGATACAGGCGCTCCGGGGGCAGACGGTGCAGGAGGAGGGCACCGATGACGAATCGACCGACGCGGACGAGGACAGTGAGTTTGAAATGCTCAACTCGGAGGAGCTGAACAACTTATGAGCACGTGGTGGCGCTTCCGAGGATTGTTAGAAGACATGTTAGGGAGAGAAGGAAAGAGAGATAGA] consensusID : consensus_7117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CCGCCCACGCGTCCGTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTCGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGATTAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCTGCGGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGATCGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGCCAAGGGCCAACAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCAACACGTCCTCGCTGTCGATTGCCGAGAATTGGGTCGGTGACGAAGCGGGCAGGATTCGGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAACGTTCCAGGCGCTGCAGGC] [+] EMBL BM584752 [CCGCCCACGCGTCCGTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTCGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGATTAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCTGCGGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGATCGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGCCAAGGGCCAACAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCAACACGTCCTCGCTGTCGATTGCCGAGAATTGGGTCGGTGACGAAGCGGGCAGGATTCGGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAACGTTCCAGGCGCTGCAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7117#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGCACAGAGTGGCACCGCCACA 60 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 ACGGGGAGCGCCCTGTCGTTTCGCTCGCAGATCTGCTTGACTTTCATACATTCGCAGGTA 120 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 ACTTGCTCAGCGCACGGAGCAACGGAGTGCAGTGAAAGAATCAGAGAAACAGAGAGAGAA 180 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 AAAAGTGAACCATAACAAACAAAACAAAAAATCCCACATCCACCCACCCACAGCCCTACT 240 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 GGTGGGTGCCGCACGAGCGGGCTTGAGAGGTAGGGGCGCGCGCGCGCTCGAAATTTCGCT 300 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 GTCACCGCGGGGCCCCCGCACGAGGTGGGGAGTCAGATCTTTGGTGGCGCGATTCGATTG 360 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 TGCGCCATTTGTGCGCTGGCCAGCAGCAGCAGCAGCAAACGTAAGACACAGTGAACACCC 420 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 CTGCCCCACGATCAAACCGCTCAAACGGGCGAAGTGTGCGCCCGCGAGACGAAGCGAAAA 480 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 GCAAATAGAAATCGAACCGTCCCGGGCGGTAAGCGGGGGTCGGGAGCACCCAAAAACAAC 540 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 AACAACAAAAAGGAGAACAATAATAATAACAACAACAACAACAACGAGTTACTTCCGTGC 600 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 TGCCGAATTTCGAAGCAGTAGCCAGCAACAGAATGAAGGTGTTACGGGAGAAGATATCGA 660 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 AAATGGCTGGAGGAGTGCAGCAAGCCATCGTGTGGTTTAAAGCCGGCGGCATCGTCAGCC 720 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 CGATGCTGCTCATCTACGTACTTCACATGCTCTGGCCCGAGTTTCGCCCGTTCAGCATAC 780 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 TGTTTGTGATTGCGATCGGGTTCCTGTGGGACCGGCCGGCCGGCCAGCAAGTGGCGGCCC 840 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 CCTCCGTAACCGCCGGCTCCCCGCTGGCCGAGCTCGGGGCGAAGGTGTGGGCGCTGCGCA 900 consensus_7117#1 --------------------CCGCCCAC-GCGTCCGTGTCGTTACCGT----ACCGTGTG 35 **** * * * ** * ** ** * * * consensus_7117#0 CGACCCGCCCGCTCAGCATGGTGGCGGGCAGTGTGGCC--GGCTGCCTCACCTACATCTA 958 consensus_7117#1 TGTCTCGTAAACTCGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTA 95 * * ** *** * ** *** ** ***** * * * * *** * ** consensus_7117#0 CCTGGTGTGCTACGTGCTGCCCCTGTGGCTGTCGTTGGGCGTCGCCGGGCTGGTCGTGTG 1018 consensus_7117#1 CCCGCAATATGGC-CACCGCTGCCAAGATTAACAATGTG-GTCGTCGTG--GGCGGTGGG 151 ** * * * * ** * * * * ** * **** ** * ** *** * consensus_7117#0 CTGGGATCGGTTCGGCGTGCCCGGTGGTCCGCTCAGCATTGCGCCGAGTTTGCACGATAC 1078 consensus_7117#1 CT--GATGGGTTC--------CGGCA--TCGCACAGGTT---GCTGCGGCCACGGGCCAC 196 ** *** ***** *** *** *** * ** * * * * ** consensus_7117#0 GCTGCAGCAGGAGCAGCAGGAAATGGACGAGTTTGTGCCGGAGCTGACGGAGGTGAGCCG 1138 consensus_7117#1 AATGTGAC----GCTGGTCGAGATGAACGA---TGCGCTCG---TGGAGAAGGCGATCGG 246 ** * ** * ** *** **** ** ** * ** * *** ** * * consensus_7117#0 CGTGCTGCTGCAAGGGTCGGTGAGCAGGGCGCGGACACGACACCGCTCGCCGACGGGTTC 1198 consensus_7117#1 TG-GCATCCGCAAAAGTCTG-GAGCGGG---TGGCCAAAAAGCAGTACAAGGACGATGCC 301 * ** * **** *** * **** ** ** ** * * * * **** * consensus_7117#0 GCCGCAGCGGCCGGTGGCCGCGGGAACAGCGCGGAGGAGGACGAGGAGCAGTACCTGCGG 1258 consensus_7117#1 GC--CAAGGGCCAACAGTT-TGTCGACGGCACGTTGG----CAAAGATCGGTG-----GC 349 ** ** **** * * ** ** ** ** * * ** * ** * consensus_7117#0 ACGCTCATCCCGGAGGCGACCAGCAACGATTTCGAGTCGGCCGAGCTGAGCGGCTCCAGC 1318 consensus_7117#1 GCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGG-AAGCGATCGTCG- 407 * ** ******* * ** * * * ** ** ** * **** * consensus_7117#0 AGCGACGAGCTGTTCTGCCCCGAGGGCCCGGCGGTGCGGA--AGGCGGGTCGGGCGCACG 1376 consensus_7117#1 AGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACA 467 **** * ** ** * * **** *** ****** * ** *** consensus_7117#0 GCCGGCCGGGCGAGCAGCAGCCGATCGAGTTCAAGAGCAGCCACTTTAA-CGCGAAC--A 1433 consensus_7117#1 -CCATCTTTGCCAGCAACACGTCCTCGCTGTCGATTGCCGAGAATTGGGTCGGTGACGAA 526 ** * ** **** ** *** ** * ** * * ** ** ** * consensus_7117#0 GCTCGTCCGACTCGGACGACAACATGTCGCGGGGGCTCAACTTTAACGACGACGAGGACG 1493 consensus_7117#1 GCGGGCAGGATTCGGGTT-CGGTGGGCTGCACTTCTTCAACCCCG-TGCCGGTCATGAAG 584 ** * ** **** * * ** ***** * ** * ** * consensus_7117#0 ACGCGGACGGCGCGTCCCGGCGACCGGCGGCCAAAGGGAGCAGCAGCAGCAGCAGCAGGC 1553 consensus_7117#1 CTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAAC-GTTCCAGGCGCTGCAGGC 643 ** * * * ******* * * * * * * * *** ** ****** consensus_7117#0 AGCAGCCGACTGGTGAGGCGATGCTGATGATGAGCGCCACCAGCCTGGCTAGCAACGTGC 1613 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 TGGTCGACACGGTGTACCGGCGTCTGCTGGACGCGGGCGCCCTGCACCAGCAGCAGCAGC 1673 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 CATCGCCGCACCATAGTATTCTTCAGTCGGTTGCCTCGCTCGGCAGCACGATACAGGCGC 1733 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 TCCGGGGGCAGACGGTGCAGGAGGAGGGCACCGATGACGAATCGACCGACGCGGACGAGG 1793 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 ACAGTGAGTTTGAAATGCTCAACTCGGAGGAGCTGAACAACTTATGAGCACGTGGTGGCG 1853 consensus_7117#1 ------------------------------------------------------------ consensus_7117#0 CTTCCGAGGATTGTTAGAAGACATGTTAGGGAGAGAAGGAAAGAGAGATAGA 1905 consensus_7117#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||