These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 671 fasta sequence [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATACACCGCAA--ACACACACACACACCTACATAAACACAGGCG--GTGTGTGTGTGTGGGTATACATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCTTAATCTTCTTCTTCATGCACACACACACAGAGTACACATGTTAATACAAGTAACTTGCTTCACGGTTGAAATGCATGCTTAGGAAAGAGCAAGAAAAGGATGAGAAGGTGGAAAAGAAACGTGGTTTTGTTTAAGGTTTTTGTTTCTGTGGCTCCTAGGCTCTAAAATGCAGTAGTGAACGCGGGAGTTTTTCCATCCCTTAGTGCGCTAGAGAGAAGAGAAGCAGGAGGGGGAGAAGAGTAGTAGCATTCAGTTGGTGTTTGAATTTGCTGTGTGTGTGTATATATCTTGCAATATATCAGAGAGAGATTGCACACCAGCTTGTGGACGTTCCTGTGTTGTGATTACNAATC] [+] EMBL BX614379 [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATACACCGCAAACACACACACACACACCTACATAAACACAGGCGGTGTGTGTGTGTGTGGGTATACATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCTTAATCTTCTTCTTCATGCACACACACACAGAGTACACATGTTAATACAAGTAACTTGCTTCACGGTTGAAATGCATGCTTAGGAAAGAGCAAGAAAAGGATGAGAAGG ] [+] EMBL BX628679 [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATACACCGCAA ACACACACACACACCTACATAAACACAGGCG GTGTGTGTGTGTGGGTATACATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTACGCCATGACCTCTTCTAC ] [+] EMBL BX626700 [ AAACAAAAAAGCAAGCAAAAAAATCCAAACTATATACACCGCAA ACACACACACACCTACATAAACACAGGCG GTGTGTGTGTGTGGGTATACATAGCAGTTAACCTTCAGCAAACGCCAGGTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCT TCTTC ATGCA CACACACACACAGAGTACACATGTTAATACAAGTAACTTGCTTCACGGTTGAAATGCATGCTTAGGAAAGAGCAAGAAAAAGATGAGAAGGTGGAAAAGAAACGTGGTTTTGTTTAAGGTTTTTGTTTCTGTGGCTCCTAGGCTCTAAAATGCAGTAGTGAACGCGGGAGTTTTTCCATCCCTTAGTGCGCTAGAGAGAAGAGAAGCAGGAGGGGGAGAAGAGTAGTAGCATTCAGTTGGTGTTTGAATTTGCTGTGTGTGTGTATATATCTTGCAATATATCAGAGAGAGATTGCACACCAGCTTGTGGACGTTCCTGTGTTGTGATTACNAATC] consensusID : consensus_7118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTCTCGGGGCGCAAAAATATTTNCCTAAAACAAAAAAGCAAGCCAAAAAATCCCAAACTATATACACCGGGAAACACACACACANCACCTACATTATAAACACAGGGCGGTGTGTGTAGATGTAGGGTATACATAGCAGTGTAACACTTCAGCAAAACGCCNGNTTATAAACGCGCCCCGCCGGCTTGTNCCGNANGGGAATATCCGGTATACNGGAATACTATNTGNGTGTAAACAGCCACAGGTTGGTTTTACCGGGTGAACCCTATCTNTCCTACCGGCCCATGTGACACATACCTGTCTTACATATTCNTTTCATTCATTCCTTTCTTCT] [+] EMBL AL932652 [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTCTCGGGGCGCAAAAATATTTNCCTAAAACAAAAAAGCAAGCCAAAAAATCCCAAACTATATACACCGGGAAACACACACACANCACCTACATTATAAACACAGGGCGGTGTGTGTAGATGTAGGGTATACATAGCAGTGTAACACTTCAGCAAAACGCCNGNTTATAAACGCGCCCCGCCGGCTTGTNCCGNANGGGAATATCCGGTATACNGGAATACTATNTGNGTGTAAACAGCCACAGGTTGGTTTTACCGGGTGAACCCTATCTNTCCTACCGGCCCATGTGACACATACCTGTCTTACATATTCNTTTCATTCATTCCTTTCTTCT] consensusID : consensus_7118#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCTTAATCTTCTTCTTC] [+] EMBL BX614632 [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCTTAATCTTCTTCTTC] consensusID : consensus_7118#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 160 fasta sequence [AAGAAAAGGATGAGAAGGGGGAAAAGAAACGTGGTTTCGTTGGGGTTTTTGTTTCTGTGGCTTTTAGGTTTTAAAATGCAGTAGAGAACGTGGGAGTTTTTCTATTTTTTAGTGCGTTAGAGAGAAGAGAAGCAGGAGGAGGAGAAGAGTAGTAGCATTC] [+] EMBL BX618142 [AAGAAAAGGATGAGAAGGGGGAAAAGAAACGTGGTTTCGTTGGGGTTTTTGTTTCTGTGGCTTTTAGGTTTTAAAATGCAGTAGAGAACGTGGGAGTTTTTCTATTTTTTAGTGCGTTAGAGAGAAGAGAAGCAGGAGGAGGAGAAGAGTAGTAGCATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7118#0 AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTT 60 consensus_7118#3 ------------------------------------------------------------ consensus_7118#2 ------------------------------------------------------------ consensus_7118#1 ------------------------------------------------------------ consensus_7118#0 TTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATA 120 consensus_7118#3 ------------------------------------------------------------ consensus_7118#2 ------------------------------------------------------------ consensus_7118#1 ------------------------------------------------------------ consensus_7118#0 TACACCGCAAACACACACACACACCTACATAAACACAGGCGGTGTGTGTGTGTGGGTATA 180 consensus_7118#3 ------------------------------------------------------------ consensus_7118#2 ------------------------------------------------------------ consensus_7118#1 ------------------------------------------------------------ consensus_7118#0 CATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGAT 240 consensus_7118#3 ------------------------------------------------------------ consensus_7118#2 ------------------------------------------------------------ consensus_7118#1 ------------------------------------------------------------ consensus_7118#0 TCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCT 300 consensus_7118#3 ------------------------------------------------------------ consensus_7118#2 ------------------------------------------------------------ consensus_7118#1 ------------------------------------------------------------ consensus_7118#0 ACTTCTTCTTCTTCTTCTTAATCTTCTTCTTCATGCACACACACACAGAGTACACATGTT 360 consensus_7118#3 ------------------------------------------------------------ consensus_7118#2 ------------------------------------------------------------ consensus_7118#1 ------------------------------------------------------------ consensus_7118#0 AATACAAGTAACTTGCTTCACGGTTGAAATGCATGCTTAGGAAAGAGCAAGAAAAGGATG 420 consensus_7118#3 ------------------------------------------------AAGAAAAGGATG 12 consensus_7118#2 ---------------------------AAGCTCTCATCTCCTATAATGATGCTACGGATA 33 consensus_7118#1 ---------------------------AAGCTCTCATCTCCTATAATGATGCTACGGATA 33 * * * **** consensus_7118#0 --AGAAGGTGGAAAAGAAACGTGGTTTTGTTTAAGGTTTTTGTTTCTGTGGCTCCTAGGC 478 consensus_7118#3 --AGAAGGGGGAAAAGAAACGTGGTTTCGTT-GGGGTTTTTGTTTCTGTGGCTTTTAGGT 69 consensus_7118#2 TTAGTAATCGGTGGGAGGAAACGGTTTTTTT-GGGGCGCAAAAATATATA---CATAAAA 89 consensus_7118#1 TTAGTAATCGGTGGGAGGAAACGGTTTC--TCGGGGCGCAAAAATATTTN---CCTAAAA 88 ** * ** * ***** * ** * * * ** consensus_7118#0 TCTAAAATGCAGT-AGTGAACGCGGGAGTTTTT-----------CCATCCCTTAGTG--- 523 consensus_7118#3 TTTAAAATGCAGT-AGAGAACGTGGGAGTTTTT-----------CTATTTTTTAGTG--- 114 consensus_7118#2 CAAAAAAGCAAGC-AAAAAAATCCAAACTATATA------GCAGTTAACCTTCAGCAA-- 140 consensus_7118#1 CAAAAAAGCAAGCCAAAAAATCCCAAACTATATACACCGGGAAACACACACACANCACCT 148 **** ** * ** * * * * * consensus_7118#0 -CGCTAGAGAGA-AGAGAAGCAGGAGGGGGAGAAGAG--TA-GTAGCATT------CAGT 572 consensus_7118#3 -CGTTAGAGAGA-AGAGAAGCAGGAGGAGGAGAAGAG--TA-GTAGCATT------C--- 160 consensus_7118#2 ACGCCAGTTATA-AACGCGCCCGCGCTTGCCGTAGGGATTC-GTTACGAT------CTTT 192 consensus_7118#1 ACATTATAAACACAGGGCGGTGTGTGTAGATGTAGGGTATACATAGCAGTGTAACACTTC 208 * * * * * * * * ** * * * * * * consensus_7118#0 TGGTGTTTGAATTTGCTGTGTGTGTGTATATATCTTGCAATATATCAGAGAGAGATTGCA 632 consensus_7118#3 ------------------------------------------------------------ consensus_7118#2 GTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTC 252 consensus_7118#1 AGCAAAACGCCNGNTTATAAACGCGCCCCGCCGGCTTGTNCCGNANGGGAATATCCGGTA 268 consensus_7118#0 CACCAGCTTGTGGACGTTCCTGTGTTGTGATTACNAATC--------------------- 671 consensus_7118#3 ------------------------------------------------------------ consensus_7118#2 TTCTTAATCTTCTTCTTC------------------------------------------ 270 consensus_7118#1 TACNGGAATACTATNTGNGTGTAAACAGCCACAGGTTGGTTTTACCGGGTGAACCCTATC 328 consensus_7118#0 ------------------------------------------------------------ consensus_7118#3 ------------------------------------------------------------ consensus_7118#2 ------------------------------------------------------------ consensus_7118#1 TNTCCTACCGGCCCATGTGACACATACCTGTCTTACATATTCNTTTCATTCATTCCTTTC 388 consensus_7118#0 ---- consensus_7118#3 ---- consensus_7118#2 ---- consensus_7118#1 TTCT 392 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||