cluster # 7120

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Anopheles gambiae
cluster # 7120 cluster # 7120 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7120#0 length = 672 sequences # 5

consensus_7120#1 length = 509 sequences # 1

consensusID : consensus_7120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 672
fasta sequence

                              [CCAGCGGAC----GGGACGACACGAAGGCAATCGCCGTTTCTACTCCCCAAAAGTATCGTTTCACATTCGATTTAATACAAAATGCAGCCGGTAGACGAGAAAGAGGACTACATTCAACAGCGGTTGAACAAAGTGCT-GGAATCACACATCGAAACAGACCGCGAAACGCTGGACGCATTGTCGGATCTGTCCACCTTCTTCAAGGAAAACACTCTTCAATCGCGTCGTAACTTGAGATCGCAAATCGAGAAAAGAAGTCTGGAAATCAATCAGAACTTTTTAAGCGCCTTCAAGGAAGTGAAGGAAGCGCTGGACGGTATCTGCGATGACATCAACTCGATGAGCCAATCGGTCGACAGCATGAAGTCGCAGCTGCGTAACACCGAAGCCCAAACGAAGGACCTCATCCTGCAGGCAAACACCTTGCAGGAAGAAAATGCAAAGCTGCAAATCCAGCAAAAGATTGCGAGTGGGTTTCTGTCCCGTTTCCAGTTGTCCGTCGCCGAACATC-AAATGCTGTACGGAGCGAAGCGGGATGCACCGATTACGGCCGAGTTTTTTCAGGTGCTGGATCGAGTTCAGCGCATTCATACCGACTGTCGGACATTGATGCAGAGTGGCTATCAAACGGTAGCGCTGGATATAATGGAGGAGATGACGTTGCACCAGGAAGCG]

[+] EMBL AL932721             [CCAGGTTAC     GGACGACACGAAAGC ATCG CG TTCTACTCCCCAAAAGTTTCGTTTC CATTCGATTTTATACAAAATGCAGCCGGTA ACGAGAAAGANGACTACATTCCACAGCGGTTGAACCAAGTGCTGGGAATCACACATC AAACAGACCGCGAAATGCTGGACGCATTGTCGGATCTGTCCACCTTCTTCAAGGAAAACACTCTTCAATCGCGTCGTAACTTGAGATCGCAAATCGAGAAAAGAAGTCTGGAAATCAATCAGAACTTTTTAAGCGCCTTCAAGGAAGTGAAGGAAGCGCTGGACGGTATCTGCGATGACATCAACTCGATGAGCCAATCGGTCGACAGCATGAAGTCGCAGCTGCGTAACACCGAAGCCCAAACGAAGGACCTCATCCTGCAGGCAAACACCTTGCAGGAAGAAAATGCAAAGCTGCAAATCCAGCAAAAGATTGCGAGTGGGTTTCTGTCCCGTTTCCAGTTGTCCGTCGCCGAACATCAAAATGCTGTACGGAGCGAAGCGGGATGCACCGATTACGG CGAGTTTTTTCAGGTGCT                                                                                                          ]
[+] EMBL BM616911             [ ccGCGGACGCGTGGGACGACACGAAGGCAATCGCCGTTTCTACTCCCCAAAAGTATCGTTTCACATTCGATTTAATACAAAATGCGGCCGGTAGACGAGAAAGAGGACTACATTCAACAGCGGTTGAACAAAGTGCT GGAATCACACATCGAAACAGACCGCGAAACGCTGGACGCATTGTCGGATCTGTCCACCTTCTTCAAGGAAAACACTCTTCAATCGCGTCGTAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM589424             [   cCGGCC    GGAACGACACGAAGGCAATCGCCGTTTCTACTCCCCAAAAGTATCGTTTCACATTCGATTTAATACAAAATGCAGCCGGTAGACGAGAAAGAGGACTACATTCAACAGCGGTTGAACAAAGTGCT GGAATCACACATCGAAACAGACCGCGAAACGCTGGACGCATTGTCGGATCTGTCCACCTTCTTCAAGGAAAACACTCTTCAATCGCGTCGTAACTTGAGATCGCAAATCGAGAAAAGAAGTCTGGAAATCAATCAGAACTTTTTAAGCGCCTTCAAGGAAGTGAAGGAAGCGCTGGACGGTATCTGCGATGACATCAACTCGATGAGCCAATCGGTCGACAGCATGAAGTCGCAGCTGCGTAACACCGAAGCCCAAACGAAGGACCTCATCCTGCAGGCAAACACCTTGCAGGAAGAAAATGCAAAGCTGCAAATCCAGCAAAAGATTGCGAGTGGGTTTCTGTCCCGTTTCCAGTTGTCCGTCGCCGAACATC AAATGCTGTACGGAGCGAAGCGGGATGCACCGATTACGGCCGAGTTTTTTCAGGTGCTGGATCGAGTTCAGCGCATTCATACCGACTGTCGGACATTGATGCAGAGTGGCTATCAAACGGTAGCGCTGGATATAATGGAGGAGATGACGTTGCACCAGGAAGCG]
[+] EMBL BX607132             [                              ATCGCCGTTTCTACTCCCCAAAAGTATCGTTTCACATTCGATTTAATACAAAATGCAGCCGGTAGACGAGAAAGAGGACTACATTCAACAGCGGTTGAACAAAGTGCT GGAATCACACATCGAAACAGACCGCGAAACGCTGGACGCATTGTCGGATCTGTCCACCTTCTTCAAGGAAAACACTCTTCAATCGCGTCGTAACTTGAGATCGCAAATCGAGAAAAGAAGTCTGGAAATCAATCAGAACTTTTTAAGCGCCTTCAAGGAAGTGAAGGAAGCGCTGGACGGTA                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX604739             [                                                                                                                                                                                                                                                           AAAAGAAGTCTGGAAATCAATCATAACTTTTTAAGCGCCTTCAAGGAAGTGAAGGAAGCGCTGGACGGTATCTGCGATGACATCAACTCGATGAGCCAATCGGTCGACAGCATGAAGTCGCAGCTGCGTAACACCGAAGCCCAAACGAAGGACCTCATCCTGCAGGCAAACACCTTGCAGGAAGAAAATGCAAAGCTGCAAATCCAGCAAAAGATTGCGAGTGGGTTTCTGTCCCGTTTCCAGTTGTCCGTCGCCGAACATC AAATGCTGTACGGAGCGAAGCGGGATGCACCGATTACGGCCGAGTTTTTTCAGGTGCTGGATCGAGTTCAGCGCATTCATACCGAC                                                                              ]




>consensus_7120#0
CCAGCGGACGGGACGACACGAAGGCAATCGCCGTTTCTACTCCCCAAAAGTATCGTTTCA
CATTCGATTTAATACAAAATGCAGCCGGTAGACGAGAAAGAGGACTACATTCAACAGCGG
TTGAACAAAGTGCTGGAATCACACATCGAAACAGACCGCGAAACGCTGGACGCATTGTCG
GATCTGTCCACCTTCTTCAAGGAAAACACTCTTCAATCGCGTCGTAACTTGAGATCGCAA
ATCGAGAAAAGAAGTCTGGAAATCAATCAGAACTTTTTAAGCGCCTTCAAGGAAGTGAAG
GAAGCGCTGGACGGTATCTGCGATGACATCAACTCGATGAGCCAATCGGTCGACAGCATG
AAGTCGCAGCTGCGTAACACCGAAGCCCAAACGAAGGACCTCATCCTGCAGGCAAACACC
TTGCAGGAAGAAAATGCAAAGCTGCAAATCCAGCAAAAGATTGCGAGTGGGTTTCTGTCC
CGTTTCCAGTTGTCCGTCGCCGAACATCAAATGCTGTACGGAGCGAAGCGGGATGCACCG
ATTACGGCCGAGTTTTTTCAGGTGCTGGATCGAGTTCAGCGCATTCATACCGACTGTCGG
ACATTGATGCAGAGTGGCTATCAAACGGTAGCGCTGGATATAATGGAGGAGATGACGTTG
CACCAGGAAGCG

consensusID : consensus_7120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [TATAATGGAGGAGATGACGTTGCACCAGGAAGCGGCACTGGAACGATTGTACCGATGGACACAGTCGCACTGTCGCAATGTGGAGTCCAACGAAATGGGTGTACTGATCGTGGAAGCGATGGCAAGATTGCAGGAGCGACCAGTGCTATTCAAATATGTCGTTGATGAGTACTCCACCGCGCGTCGTTCGGTGGTTGTGCGAAGTTTCATCGATGCCCTCACCATAGGTGGCCCGGGAGGAAATCCACGCCCGATAGAGATGCTTGCGCACGATCCAAAGCGCTACATTGGCGATATGTTTGCGTACATCCATCAAATATTGCCTCCGGAAAAGGAAAACCTGCAAATGCTGGTGCGGAACTGTGACAAGGAGGACATTTCCGAGCAGATTCAATCGGCCATGATAAACCTGTCCGACGGAGTGTGCCATCCGCTGCGTGTGCGCGTGGAGACGATCCTGAACGCNGAGAAGGACACCATCATTCTGTACTCCATCTTCAATCTGATCA]

[+] EMBL BX620278             [TATAATGGAGGAGATGACGTTGCACCAGGAAGCGGCACTGGAACGATTGTACCGATGGACACAGTCGCACTGTCGCAATGTGGAGTCCAACGAAATGGGTGTACTGATCGTGGAAGCGATGGCAAGATTGCAGGAGCGACCAGTGCTATTCAAATATGTCGTTGATGAGTACTCCACCGCGCGTCGTTCGGTGGTTGTGCGAAGTTTCATCGATGCCCTCACCATAGGTGGCCCGGGAGGAAATCCACGCCCGATAGAGATGCTTGCGCACGATCCAAAGCGCTACATTGGCGATATGTTTGCGTACATCCATCAAATATTGCCTCCGGAAAAGGAAAACCTGCAAATGCTGGTGCGGAACTGTGACAAGGAGGACATTTCCGAGCAGATTCAATCGGCCATGATAAACCTGTCCGACGGAGTGTGCCATCCGCTGCGTGTGCGCGTGGAGACGATCCTGAACGCNGAGAAGGACACCATCATTCTGTACTCCATCTTCAATCTGATCA]




>consensus_7120#1
TATAATGGAGGAGATGACGTTGCACCAGGAAGCGGCACTGGAACGATTGTACCGATGGAC
ACAGTCGCACTGTCGCAATGTGGAGTCCAACGAAATGGGTGTACTGATCGTGGAAGCGAT
GGCAAGATTGCAGGAGCGACCAGTGCTATTCAAATATGTCGTTGATGAGTACTCCACCGC
GCGTCGTTCGGTGGTTGTGCGAAGTTTCATCGATGCCCTCACCATAGGTGGCCCGGGAGG
AAATCCACGCCCGATAGAGATGCTTGCGCACGATCCAAAGCGCTACATTGGCGATATGTT
TGCGTACATCCATCAAATATTGCCTCCGGAAAAGGAAAACCTGCAAATGCTGGTGCGGAA
CTGTGACAAGGAGGACATTTCCGAGCAGATTCAATCGGCCATGATAAACCTGTCCGACGG
AGTGTGCCATCCGCTGCGTGTGCGCGTGGAGACGATCCTGAACGCNGAGAAGGACACCAT
CATTCTGTACTCCATCTTCAATCTGATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7120#0      CCAGCGGACGGGACGACACGAAGGCAATCGCCGTTTCTACTCCCCAAAAGTATCGTTTCA 60
consensus_7120#1      ------------------------------------------------------------
                                                                                  

consensus_7120#0      CATTCGATTTAATACAAAATGCAGCCGGTAGACGAGAAAGAGG-ACTACATTCAACA-GC 118
consensus_7120#1      -------TATAATGGAGGAGATGAC-GTTGCACCAGGAAGCGGCACTGGAACGATTGTAC 52
                             * ****  *  *     * * *  ** ** *** ** ***  *   *     *

consensus_7120#0      GGTTGAACAAAGTGCTGGAATCACACATCGAAACAGACCGCGAAACGCTGGACGCATTGT 178
consensus_7120#1      CGATGGACACAGTCGCACTGTCGCAATGTGGAGTCCAACG-AAATGGGTGTACTGATCGT 111
                       * ** *** ***       ** **    * *    * **  **  * ** **  ** **

consensus_7120#0      CGGATC--TGTCCACCTTCTTCAAGGAA--AACACTCTTCAATCGCGTCGTAACTTGAGA 234
consensus_7120#1      GGAAGCGATGGCAAGATTGCAGGAGCGACCAGTGCTATTCAAATATGTCGTTGATGAGTA 171
                       * * *  ** * *  **     **  *  *   ** *****    *****   *    *

consensus_7120#0      TCGCAAATCGAGAAAAGAAGTCTGGAAATCAATCAGAACTTTTTAAGCGCCTTCAAGGAA 294
consensus_7120#1      CTCCACCGCGCGT-----CGTTCGGTGGTTGTGCGAAGTTTCATCGATGCCCTCA----- 221
                         **   ** *       **  **   *    *  *  **  *    *** ***     

consensus_7120#0      GTGAAGGAAGCGCTGGACGGTATCTGCGATGACATCAACTCGATGAGCCAATCGGTCGAC 354
consensus_7120#1      CCATAGGTGGCCCGGGAGGAAATCCACGCCCG-ATAGAGATGCTTGCGCA--CGATCCAA 278
                          ***  ** * *** *  ***  **     **  *   * *    **  ** ** * 

consensus_7120#0      AGCATGAAGTCGCAGCTGCGTAACACCGAAGCCCAAACGAAGGACCTCATCCTGCAGGCA 414
consensus_7120#1      AGCGCTACATTGGCGATATGTT-TGCGTACATCC--ATCAAATATTGCCTCCGGAAAAGG 335
                      ***   *  * *  * *  **    *  *   **  *  **  *   * *** * *    

consensus_7120#0      AACACCTTGCAGGAAGAAAATGCAAAGCTGCAAATCCAGCAAAAGATTGC-GAGTGGGTT 473
consensus_7120#1      AAAACCT-GCAA-ATGCTGGTGCGGAACTGTGA--CAAGGAGGACATTTCCGAGCAGATT 391
                      ** **** ***  * *    ***  * ***  *  * ** *  * *** * ***  * **

consensus_7120#0      T--CTGTCCCGTTTCCAGTTGTCCGTCGCCGAACATCAAATGCTGTACGGAGCGAAGCGG 531
consensus_7120#1      CAATCGGCCATGATAAACCTGTCCGACGGAGTGTGCCATCCGCTGCGTGT-GCGCGTGGA 450
                           * **    *  *  ****** **  *     **   ****   *  ***    * 

consensus_7120#0      GATGCACC-GATTACGGCCGAGTTTTTTCAGGTGCTGGAT--CGAGTTCAGCGCATTCAT 588
consensus_7120#1      GACGATCCTGAACGCNGAGAAGGACACCATCATTCTGTACTCCATCTTCAATCTGATCA- 509
                      ** *  ** **   * *   **          * *** *   *   ****      *** 

consensus_7120#0      ACCGACTGTCGGACATTGATGCAGAGTGGCTATCAAACGGTAGCGCTGGATATAATGGAG 648
consensus_7120#1      ------------------------------------------------------------
                                                                                  

consensus_7120#0      GAGATGACGTTGCACCAGGAAGCG 672
consensus_7120#1      ------------------------