These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1000 fasta sequence [CCGCCCACGCGTCCGGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGA-G-ATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGT-GACCGG-TTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCG-CAGACAGGTTTGCCGACCGCGCCAAGTGC-GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATGCCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGGACCGGTCGGTGACGGGTCTGGTGGCGCAGCAGCAGTGCGTGGGCCCGCTGCACACACCGCTGGCCGACTTCGGGCTTGGTGGCGGTGTCGCACTTTGCCCGCCAAGGCGT] [+] EMBL BM596566 [CCGCCCACGCGTCCGGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGA G ATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCATGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGT GACCGG TTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCGCCAGACAGGTTTGCCGACCGCGCC ] [+] EMBL BM654239 [ ccgGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGA G ATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGTGGACCGGTTTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCG CAGACAGGTTTGCCGACCGCGCCAAGTGCGGGCAAGGAGCTGGC ] [+] EMBL BM591979 [ acCCA CGC GT CCGCGGACGCGTGG GAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGT GACCGG TTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCG CAGACAGGTTTGCCGACCGCGCCAAGTGC GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATGCCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGGACCGGTCGGTGACGGGTCTGGTGGCGCAGCAGCAGTGCGTGGGCCCGCTGCACACACCGCTGGCCGACTTCGGGCTTGGTGGCGGTGTCGCACTTTGCCCGCCAAGGCGT] [+] EMBL BM614892 [ TTGCCGACCGCGCCAAGTGC GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATGCCGCACAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGG ] consensusID : consensus_7121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 754 fasta sequence [CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGCGGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCACAAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTGCTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATTTGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCA-GGGCGCCGGTGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAA] [+] EMBL BM595653 [CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGCGGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCACAAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTGCTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATTTGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCA GGGCGCCGGTGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGC ] [+] EMBL BM599356 [ ccgGCTGAAAGTGCTGATTGAGGCGAGCGACGGTGCGTCGGATTATGGCAACAAGTTTGGCGAGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTAAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7121#0 ------------------------------------------------------------ consensus_7121#1 CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGC 60 consensus_7121#0 ------------------------------------------------------------ consensus_7121#1 GGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCAC 120 consensus_7121#0 ------------------------------------------------------------ consensus_7121#1 AAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTG 180 consensus_7121#0 -----------------------------------CCGCCCACGCGTCCGGCCGGTCATT 25 consensus_7121#1 CTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATT 240 * * * * *** ****** consensus_7121#0 TGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTG 85 consensus_7121#1 TGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTG 300 ***** ****************************************************** consensus_7121#0 AAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAG 145 consensus_7121#1 AAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAG 360 ***************************************** ************** *** consensus_7121#0 GATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTC 205 consensus_7121#1 GATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTC 420 ************************************************************ consensus_7121#0 GGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGAC 265 consensus_7121#1 GGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGAC 480 ***************************************** ****************** consensus_7121#0 TTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGC 325 consensus_7121#1 TTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGC 540 ************************************************************ consensus_7121#0 GCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGG 385 consensus_7121#1 GCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGT 600 ******************** ************************************** consensus_7121#0 GGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTC 445 consensus_7121#1 GGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTC 660 ************************************************************ consensus_7121#0 TCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAG 505 consensus_7121#1 TCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAG 720 ************************************************************ consensus_7121#0 TATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATC 565 consensus_7121#1 TATCAGGAAAACAATGCCGTCCTGCTGGACGCAA-------------------------- 754 ********************************** consensus_7121#0 TGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGTGACCGGTTCCGGGTACGTA 625 consensus_7121#1 ------------------------------------------------------------ consensus_7121#0 ACGCTGCTAGAGCAAGAGTTTGACGCCGGCGCAGACAGGTTTGCCGACCGCGCCAAGTGC 685 consensus_7121#1 ------------------------------------------------------------ consensus_7121#0 GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATG 745 consensus_7121#1 ------------------------------------------------------------ consensus_7121#0 CCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACG 805 consensus_7121#1 ------------------------------------------------------------ consensus_7121#0 GCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGC 865 consensus_7121#1 ------------------------------------------------------------ consensus_7121#0 AAGCGCTACCTAACGAACAAGGTGGACCGGTCGGTGACGGGTCTGGTGGCGCAGCAGCAG 925 consensus_7121#1 ------------------------------------------------------------ consensus_7121#0 TGCGTGGGCCCGCTGCACACACCGCTGGCCGACTTCGGGCTTGGTGGCGGTGTCGCACTT 985 consensus_7121#1 ------------------------------------------------------------ consensus_7121#0 TGCCCGCCAAGGCGT 1000 consensus_7121#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||