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Anopheles gambiae
cluster # 7121 cluster # 7121       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7121#0 length = 1000 sequences # 4  
consensus_7121#1 length = 754 sequences # 2  

consensusID : consensus_7121#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1000
fasta sequence
                              [CCGCCCACGCGTCCGGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGA-G-ATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGT-GACCGG-TTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCG-CAGACAGGTTTGCCGACCGCGCCAAGTGC-GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATGCCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGGACCGGTCGGTGACGGGTCTGGTGGCGCAGCAGCAGTGCGTGGGCCCGCTGCACACACCGCTGGCCGACTTCGGGCTTGGTGGCGGTGTCGCACTTTGCCCGCCAAGGCGT]

[+] EMBL BM596566             [CCGCCCACGCGTCCGGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGA G ATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCATGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGT GACCGG TTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCGCCAGACAGGTTTGCCGACCGCGCC                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM654239             [                         ccgGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGA G ATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGTGGACCGGTTTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCG CAGACAGGTTTGCCGACCGCGCCAAGTGCGGGCAAGGAGCTGGC                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM591979             [                                                                                                                                                                                                                                                                                  acCCA CGC GT CCGCGGACGCGTGG GAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGT GACCGG TTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCG CAGACAGGTTTGCCGACCGCGCCAAGTGC GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATGCCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGGACCGGTCGGTGACGGGTCTGGTGGCGCAGCAGCAGTGCGTGGGCCCGCTGCACACACCGCTGGCCGACTTCGGGCTTGGTGGCGGTGTCGCACTTTGCCCGCCAAGGCGT]
[+] EMBL BM614892             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTGCCGACCGCGCCAAGTGC GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATGCCGCACAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGG                                                                                                              ]


>consensus_7121#0 CCGCCCACGCGTCCGGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTC GGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGAT GGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGG CGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGG CGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGA GAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCT GGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACC GGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTC CACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAG CGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGG ACAGGTGACCGGTTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCGCAGA CAGGTTTGCCGACCGCGCCAAGTGCGGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCA CCTGGACCACGTGCTGGGCAAGATGCCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGA GCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGT GCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGGACCGGTCGGT GACGGGTCTGGTGGCGCAGCAGCAGTGCGTGGGCCCGCTGCACACACCGCTGGCCGACTT CGGGCTTGGTGGCGGTGTCGCACTTTGCCCGCCAAGGCGT



consensusID : consensus_7121#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 754
fasta sequence
                              [CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGCGGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCACAAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTGCTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATTTGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCA-GGGCGCCGGTGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAA]

[+] EMBL BM595653             [CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGCGGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCACAAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTGCTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATTTGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCA GGGCGCCGGTGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGC                                                                                      ]
[+] EMBL BM599356             [                                                                                                                                                                       ccgGCTGAAAGTGCTGATTGAGGCGAGCGACGGTGCGTCGGATTATGGCAACAAGTTTGGCGAGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTAAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAA]


>consensus_7121#1 CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGC GGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCAC AAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTG CTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATT TGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTG AAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAG GATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTC GGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGAC TTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGC GCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGT GGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTC TCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAG TATCAGGAAAACAATGCCGTCCTGCTGGACGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7121#0      ------------------------------------------------------------
consensus_7121#1      CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGC 60
                                                                                  

consensus_7121#0      ------------------------------------------------------------
consensus_7121#1      GGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCAC 120
                                                                                  

consensus_7121#0      ------------------------------------------------------------
consensus_7121#1      AAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTG 180
                                                                                  

consensus_7121#0      -----------------------------------CCGCCCACGCGTCCGGCCGGTCATT 25
consensus_7121#1      CTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATT 240
                                                         *  *      * *  *** ******

consensus_7121#0      TGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTG 85
consensus_7121#1      TGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTG 300
                      ***** ******************************************************

consensus_7121#0      AAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAG 145
consensus_7121#1      AAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAG 360
                      ***************************************** ************** ***

consensus_7121#0      GATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTC 205
consensus_7121#1      GATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTC 420
                      ************************************************************

consensus_7121#0      GGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGAC 265
consensus_7121#1      GGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGAC 480
                      ***************************************** ******************

consensus_7121#0      TTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGC 325
consensus_7121#1      TTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGC 540
                      ************************************************************

consensus_7121#0      GCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGG 385
consensus_7121#1      GCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGT 600
                      ******************** ************************************** 

consensus_7121#0      GGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTC 445
consensus_7121#1      GGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTC 660
                      ************************************************************

consensus_7121#0      TCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAG 505
consensus_7121#1      TCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAG 720
                      ************************************************************

consensus_7121#0      TATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATC 565
consensus_7121#1      TATCAGGAAAACAATGCCGTCCTGCTGGACGCAA-------------------------- 754
                      **********************************                          

consensus_7121#0      TGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGTGACCGGTTCCGGGTACGTA 625
consensus_7121#1      ------------------------------------------------------------
                                                                                  

consensus_7121#0      ACGCTGCTAGAGCAAGAGTTTGACGCCGGCGCAGACAGGTTTGCCGACCGCGCCAAGTGC 685
consensus_7121#1      ------------------------------------------------------------
                                                                                  

consensus_7121#0      GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATG 745
consensus_7121#1      ------------------------------------------------------------
                                                                                  

consensus_7121#0      CCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACG 805
consensus_7121#1      ------------------------------------------------------------
                                                                                  

consensus_7121#0      GCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGC 865
consensus_7121#1      ------------------------------------------------------------
                                                                                  

consensus_7121#0      AAGCGCTACCTAACGAACAAGGTGGACCGGTCGGTGACGGGTCTGGTGGCGCAGCAGCAG 925
consensus_7121#1      ------------------------------------------------------------
                                                                                  

consensus_7121#0      TGCGTGGGCCCGCTGCACACACCGCTGGCCGACTTCGGGCTTGGTGGCGGTGTCGCACTT 985
consensus_7121#1      ------------------------------------------------------------
                                                                                  

consensus_7121#0      TGCCCGCCAAGGCGT 1000
consensus_7121#1      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)