These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1209 fasta sequence [CCGCCCACGCGTCCGAAAGACCCTTGCCTTCGGTATACCGATGCTAGAAGGTATCATGCGTCTGAAGAAGGGCAAGAAACCGGTGGCAGACGATTCGAGCGAGCACGAAATGACGCCTCCACCGGAAGATATGGAAGTCACGGAGGAGGATGCAAAGGTGTTCGCAGAGGAGGGTCGTAAGCTGGGCAATTCGTCAGCCGCCCCTGAAGACAAACCCTTGTACGGGTTAATCCTTACACCGACTCGTGAATTAGCGGTACAGATTAACGATCATCTGAAGGCGGTCGCTAAGTATACCGACATTAACATTGCGACCGTGTTCGGTGGTTTGGCCACGGTGAAGCAGGAACGCATGCTGCGCAAATGTCCGGAGATAGTGATCGCAACGCCGGGTCGGCTGTGGGAGCTGGTCAAGAGTGAAAATCATCACCTTTCCAAGGTGACAGACATCAGATATCTCGTTATCGATGAAACAGATCGAATGCTGGAAAAGGGACACTTTGAGGAGCTGAAGGAACTGCTGGCCCTGATCAACGCCAACGAGGAGGCAAAGAAGCTTCGTCGGAACTATATCTTCTCTGCCACGCTTACGATGGACCATGAGATGCCTACTCATATAAAACGACATCCTAAGAAGTCGAAAAAAGCGCTCAAACTAACGCCCGGCCAGCGTATGGCGAATCTAATCGAAACCATCGGTATGACCGATCCGAAGATCGTCGACCTTACGCAAGACCACGGCACTGCTCGTACGCTAACCGAATCGCGTATCCTGTGCCAGATGGAGCACAAAGACTTTTATCTGTACTACTTTCTCGATCGTCATCCCGGTCGAACGCTCGTGTTCTGCAACTCGATCGACTGCGTGAAACGGCTCGTTTCTCTGTTCGACTATCTGAACTGCCAGCCGCTTAGTCTGTTTGGAAGCATGCAGCAGCGCCAGCGGCTGAAGAATCTGGAGCGTTTTACGGCCAACCCACGGGCACTGCTGATTGCGACCGATGTAGCCGCGCGTGGTTTGGACATTCCGAACGTGGACCACGTCATCCACTATCAGGTGCCGAAGACGACGGAAAACTATGTGCACCGTTCGGGGCGTACGGCACGCGCAAGCAAGGAAGGTTTGACGGTGCTGCTGATTGGACCGTCCGANGTGAGGGACTACGTTAAGCTGAACCAAGATTTGGGCCGCACGGAGGATCTGCCACT] [+] EMBL BM622002 [CCGCCCACGCGTCCGAAAGACCCTTGCCTTCGGTATACCGATGCTAGAAGGTATCATGCGTCTGAAGAAGGGCAAGAAACCGGTGGCAGACGATTCGAGCGAGCACGAAATGACGCCTCCACCGGAAGATATGGAAGTCACGGAGGAGGATGCAAAGGTGTTCGCAGAGGAGGGTCGTAAGCTGGGCAATTCGTCAGCCGCCCCTGAAGACAAACCCTTGTACGGGTTAATCCTTACACCGACTCGTGAATTAGCGGTACAGATTAACGATCATCTGAAGGCGGTCGCTAAGTATACCGACATTAACATTGCGACCGTGTTCGGTGGTTTGGCCACGGTGAAGCAGGAACGCATGCTGCGCAAATGTCCGG ] [+] EMBL BX627494 [ CCGTGTTCGGTGGTTTGGCCACGGTGAAGCAGGAACGCATGCTGCGCAAATGTCCGGAGATAGTGATCGCAACGCCGGGTCGGCTGTGGGAGCTGGTCAAGAGTGAAAATCATCACCTTTCCAAGGTGACAGACATCAGATATCTCGTTATCGATGAAACAGATCGAATGCTGGAAAAGGGACACTTTGAGGAGCTGAAGGAACTGCTGGCCCTGATCAACGCCAACGAGGAGGCAAAGAAGCTTCGTCGGAACTATATCTTCTCTGCCACGCTTACGATGGACCATGAGATGCCTACTCATATAAAACGACATCCTAAGAAGTCGAAAAAAGCGCTCAAACTAACGCCCGGCCAGCGTATGGCGAATCTAATCGAAACCATCGGTATGACCGATCCGAAGATCGTCGACCTTACGCAAGACCACGGCACTGCTCGTACGCTAACCGAATCGCGTATCCTGTGCCAGATGGAGCACAAAGACTTTTATCTGTACTACTTTCTCGATCGTCATCCCGGTCGAACGCTCGTGTTCTGCAACTCGATCGACTGCGTGAAACGGCTCGTTTCTCTGTTCGACTATCTGAACTGCCAGCCGCTTAGTCTGTTTGGAAGCATGCAGCAGCGCCAGCGGCTGAAGAATCTGGAGCGTTTTACGGCCAACCCACGGGCACTGCTGATTGCGACCGATGTAGCCGCGCGTGGTTTGGACATTCCGAACGTGGACCACGTCA ] [+] EMBL BX620838 [ GGCTGTGGGAGCTGGTTAAGAGTGAAAATCATCACCTTTCCAAGGTGGCAGACATCAGATATCTCGTTATCGATGAAACAGATCGAATGCTGGAAAAGGGACACTTTGAGGAGCTGAAGGAACTGCTGGCCCTGATCAACGCCAACGAGGAGGCAAAGAAGCTTCGTCGGAACTATATCTTCTCTGCCACGCTTACGACGGACCATGAGATGCCTACTCATATAAAAAGACATCCTAAGAAGTCGAAAAAAGCGCTCAAACTAACGCCCGGCCAGCGTATGGCGAATCTAATCGAAACCATCGGTATGACCGATCCGAAGATCGTCGACCTTACGCAAGACCACGGCACTGCTCGTACGCTAACCGAATCGCGTATCCTGTGCCAGATGGAGCACAAAGACTTTTATCTGTACTACTTCCTCGATCGTCATCCCGGGCGAACGCTCGTGTTCTGCAACTCGATCGACTGCGTGAAGCGGCTCGTTTCTCTGTTCGACTATCTGAACTGCCAGCCGCTTAGTCTGTTTGGAAGCATGCAGCAGCGCCAGCGGCTGAAGAATCTGGAGCGTTTTACGGCCAACCCACGGGCACTGCTGATTGCGACCGATGTAGCCGCGCGTGGTTTGGACATTNCGAACGTGGACCACGTCA ] [+] EMBL BM611027 [ ccgATCACCTTTCCAAGGTGACAGACATCAGATATCTCGTTATCGATGAAACAGATCGAATGCTGGAAAAGGGACACTTTGAGGAGCTGAAGGAACTGCTGGCCCTGATCAACGCCAACGAGGAGGCAAAGAAGCTTCGTCGGAACTATATCTTCTCTGCCACGCTTACGATGGACCATGAGATGCCTACTCATATAAAACGACATCCTAAGAAGTCGAAAAAAGCGCTCAAACTAACGCCCGGCCAGCGTATGGCGAATCTAATCGAAACCATCGGTATGACCGATCCGAAGATCGTCGACCTTACGCAAGACCACGGCACTGCTCGTACGCTAACCGAATCGCGTATCCTGTGCCAGATGGAGCACAAAGACTTTTATCTGTACTACTTTCTCGATCGTCATCCCGGTCGAACGCTCGTGTTCTGCAACTCGATCGACTGCGTGAAACGGCTCGTTTCTCTGTTCGACTATCTGAACTGCCAGCCGCTTAGTCTGTTTGGAAGCATGCAGCAGCGCCAGCGGCTGAAGAATCTGGAGCGTTTTACGGCCAACCCA ] [+] EMBL BX620066 [ GCTGAAGGAACTGCTGGCCCTGATCAACGCCAACGAGGAGGCAAAGAAGCTTCGTCGGAACTATATCTTCTCTGCCACGCTTACGATGGACCATGAGATGCCTACTCATATAAAAAGACATCCTAAGAAGTCGAAAAAAGCGCTCAAACTAACGCCCGGCCAGCGTATGGCGAATCTAATCGAAACCATCGGTATGACCGATCCGAAGATCGTCGACCTTACGCAAGACCACGGCACTGCTCGTACGCTAACCGAATCGCGTATCCTGTGCCAGATGGAGCACAAAGACTTTTATCTGTACTACTTCCTCGATCGTCATCCCGGTCGAACGCTCGTGTTCTGCAACTCGATCGACTGCGTGAAGCGGCTCGTTTCTCTGTTCGACTATCTGAACTGCCAGCCGCTTAGTCTGTTTGGAAGCATGCAGCAGCGCCAGCGGCTGAAGAATCTGGAGCGTTTTACGGCCAACCCACGGGCACTGCTGATTGCGACCGATGTAGCCGCGCGTGGTTTGGACATTCCGAACGTGGACCACGTCATCCACTATCAGGTGCCGAAGACGACGGAAAACTATGTGCACCGTTCGGGGCGTACGGCACGCGCAAGCAAGGAAGGTTTGACGGTGCTGCTGATTGGACCGTCCGANGTGAGGGACTACGTTAAGCTGAACCAAGATTTGGGCCGCACGGAGGATCTGCCACT] consensusID : consensus_7124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [ATCGGCCAGGCTNTATTATCGATGAAACAGATCGAATGCTGGAAAAGGGACACTTTGAGGAGCTGAAGGAACTGCTGGCCCTGATCAACGCCAACGAGGAGGCAAAGAAGCTTCGTCGGAACTATATCTTCTCTGCCACGCTTACGATGGACCATGAGATGCCTACTCATATAAAAAGACATCCTAAGAAGTCGAAAAAAGCGCTCAAACTAACGCCCGGCCAGCGTATGGCGAATCTAATCGAAACCATCGGTATGACCGATCCGAAGATCGTCGACCTTACGCAAGACCACGGCACTGCTCGTACGCTAACCGAATCGCGTATCCTGTGCCAGATGGAGCACAAAGACTTTTATCTGTACTACTTCCTCGATCGTCATCCCGGTCGAACGCTCGTGTTCTGCAACTCGATCGACTGCGTGAAGCGGCTCCTTTCTCTGTTCGACTATCTGAACTGCCAGCCGCTTAGTCTGTTTGGAAGCATGCAGCAGCGCCAGCGGCTGAAGAATCTGGAGCGTTTTACGGCCAACCCACGGGCACTGCTGATTGCGACCGATGTAGCCGCGCGTG] [+] EMBL AL932850 [ATCGGCCAGGCTNTATTATCGATGAAACAGATCGAATGCTGGAAAAGGGACACTTTGAGGAGCTGAAGGAACTGCTGGCCCTGATCAACGCCAACGAGGAGGCAAAGAAGCTTCGTCGGAACTATATCTTCTCTGCCACGCTTACGATGGACCATGAGATGCCTACTCATATAAAAAGACATCCTAAGAAGTCGAAAAAAGCGCTCAAACTAACGCCCGGCCAGCGTATGGCGAATCTAATCGAAACCATCGGTATGACCGATCCGAAGATCGTCGACCTTACGCAAGACCACGGCACTGCTCGTACGCTAACCGAATCGCGTATCCTGTGCCAGATGGAGCACAAAGACTTTTATCTGTACTACTTCCTCGATCGTCATCCCGGTCGAACGCTCGTGTTCTGCAACTCGATCGACTGCGTGAAGCGGCTCCTTTCTCTGTTCGACTATCTGAACTGCCAGCCGCTTAGTCTGTTTGGAAGCATGCAGCAGCGCCAGCGGCTGAAGAATCTGGAGCGTTTTACGGCCAACCCACGGGCACTGCTGATTGCGACCGATGTAGCCGCGCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7124#0 CCGCCCACGCGTCCGAAAGACCCTTGCCTTCGGTATACCGATGCTAGAAGGTATCATGCG 60 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 TCTGAAGAAGGGCAAGAAACCGGTGGCAGACGATTCGAGCGAGCACGAAATGACGCCTCC 120 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 ACCGGAAGATATGGAAGTCACGGAGGAGGATGCAAAGGTGTTCGCAGAGGAGGGTCGTAA 180 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 GCTGGGCAATTCGTCAGCCGCCCCTGAAGACAAACCCTTGTACGGGTTAATCCTTACACC 240 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 GACTCGTGAATTAGCGGTACAGATTAACGATCATCTGAAGGCGGTCGCTAAGTATACCGA 300 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 CATTAACATTGCGACCGTGTTCGGTGGTTTGGCCACGGTGAAGCAGGAACGCATGCTGCG 360 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 CAAATGTCCGGAGATAGTGATCGCAACGCCGGGTCGGCTGTGGGAGCTGGTCAAGAGTGA 420 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 AAATCATCACCTTTCCAAGGTGACAGACATCAGATA--TCTCGTTATCGATGAAACAGAT 478 consensus_7124#1 ----------------------------ATCGGCCAGGCTNTATTATCGATGAAACAGAT 32 *** * * ***************** consensus_7124#0 CGAATGCTGGAAAAGGGACACTTTGAGGAGCTGAAGGAACTGCTGGCCCTGATCAACGCC 538 consensus_7124#1 CGAATGCTGGAAAAGGGACACTTTGAGGAGCTGAAGGAACTGCTGGCCCTGATCAACGCC 92 ************************************************************ consensus_7124#0 AACGAGGAGGCAAAGAAGCTTCGTCGGAACTATATCTTCTCTGCCACGCTTACGATGGAC 598 consensus_7124#1 AACGAGGAGGCAAAGAAGCTTCGTCGGAACTATATCTTCTCTGCCACGCTTACGATGGAC 152 ************************************************************ consensus_7124#0 CATGAGATGCCTACTCATATAAAACGACATCCTAAGAAGTCGAAAAAAGCGCTCAAACTA 658 consensus_7124#1 CATGAGATGCCTACTCATATAAAAAGACATCCTAAGAAGTCGAAAAAAGCGCTCAAACTA 212 ************************ *********************************** consensus_7124#0 ACGCCCGGCCAGCGTATGGCGAATCTAATCGAAACCATCGGTATGACCGATCCGAAGATC 718 consensus_7124#1 ACGCCCGGCCAGCGTATGGCGAATCTAATCGAAACCATCGGTATGACCGATCCGAAGATC 272 ************************************************************ consensus_7124#0 GTCGACCTTACGCAAGACCACGGCACTGCTCGTACGCTAACCGAATCGCGTATCCTGTGC 778 consensus_7124#1 GTCGACCTTACGCAAGACCACGGCACTGCTCGTACGCTAACCGAATCGCGTATCCTGTGC 332 ************************************************************ consensus_7124#0 CAGATGGAGCACAAAGACTTTTATCTGTACTACTTTCTCGATCGTCATCCCGGTCGAACG 838 consensus_7124#1 CAGATGGAGCACAAAGACTTTTATCTGTACTACTTCCTCGATCGTCATCCCGGTCGAACG 392 *********************************** ************************ consensus_7124#0 CTCGTGTTCTGCAACTCGATCGACTGCGTGAAACGGCTCGTTTCTCTGTTCGACTATCTG 898 consensus_7124#1 CTCGTGTTCTGCAACTCGATCGACTGCGTGAAGCGGCTCCTTTCTCTGTTCGACTATCTG 452 ******************************** ****** ******************** consensus_7124#0 AACTGCCAGCCGCTTAGTCTGTTTGGAAGCATGCAGCAGCGCCAGCGGCTGAAGAATCTG 958 consensus_7124#1 AACTGCCAGCCGCTTAGTCTGTTTGGAAGCATGCAGCAGCGCCAGCGGCTGAAGAATCTG 512 ************************************************************ consensus_7124#0 GAGCGTTTTACGGCCAACCCACGGGCACTGCTGATTGCGACCGATGTAGCCGCGCGTGGT 1018 consensus_7124#1 GAGCGTTTTACGGCCAACCCACGGGCACTGCTGATTGCGACCGATGTAGCCGCGCGTG-- 570 ********************************************************** consensus_7124#0 TTGGACATTCCGAACGTGGACCACGTCATCCACTATCAGGTGCCGAAGACGACGGAAAAC 1078 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 TATGTGCACCGTTCGGGGCGTACGGCACGCGCAAGCAAGGAAGGTTTGACGGTGCTGCTG 1138 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 ATTGGACCGTCCGANGTGAGGGACTACGTTAAGCTGAACCAAGATTTGGGCCGCACGGAG 1198 consensus_7124#1 ------------------------------------------------------------ consensus_7124#0 GATCTGCCACT 1209 consensus_7124#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||