These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1621 fasta sequence [CCGGTTCGCGATGCTAAAATTAACAACCGTCAATTCGCTGCGCTTCCGGCCTTTCGGTGGTGCGGTTCGGTGGCGTAGCGCTACCGCGCAACCAGCTGCTGACACGTCCGTCGATCCGGAGTGGGAGAACGCGCTGCCGTTTGAAAAGATTCCCGCACCGTCTTTACTCGGATTTCTGAAGGAATTTGGACCTTTTGGTAAATACAAGGATGGTAATCTGTACGATATCAACAAACGATTACGCGAGCTGTACGGTCCAATCTTGCGGATGAACGGTTCGTTTGGGAGGGAAGATTTGGTGATGACGTTCGTACCGGAAGACTTTGAGAAGGTACTGCGCTCGGAGGGTCCCTGGCCAAGGCGTACGGGGATGGATTCGTTCGTGTACTATCGCAAACAGCATCGTCCGGAGTACTTTAAGGGCTATGGCGGATTGCTGGCCGAACAAGGCGAAGACTGGCACAAGATGCGGACGATCGTCAATCCGATCATGATGCAGCCGAAGGTCATCAGGCAGTACGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGTGCGATGAGAATCACGAGTTGCCGGCTGACTTTAACGAATGGTTGAACCGTTGGGCGTTCGAAACCATGGGTGTGCTGGTGCTGGACTCGCGGCTTGGTGTGCTGGACAAGGACCAAACACCCGAAGTTACCCATTTCATCGATCTAACGAAAGGGGCAGTCACCTTGTTCTATCAGCTTGATATACTACCATCGATATGGCGGAAGCTGAAAACACCTGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAATTGCTGCCCGAATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACGATGTCGATGGACAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATTCTGTACTGTCTAGCCAAGAACCCTGAGAAGCAGGAGAAACTTCGTGCCGAGTTGCGGAAGATTATGCCCAACAAGGACAGTCCACTCACGCCGGATAGTATGAAGAATATGCCGTACCTTAGGGCTTGTATCAAGGAGAGCCTGCGCATGTATCCACCGACCTCGGGCAATGGTCGTTGTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAATGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGCCCGTCGGAGTTCATGCCGGAACGATGGCTTAGCGGGGAGGCCGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCATCCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGTAAGCGGTTGGCAATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAATTACGGCGAGCTGAAGTACAGAGCGACACTTGTCAACATACCTGCGAACGATCTAAAGTTCCAGCTGAAGGAAGTGAGCGATTGAGCAACTGCTTAGGTAAGGTACTAGTTGGTAAGGGATTACTGTTTT] [+] EMBL BM637204 [CCGGTTCGCGATGCTAAAATTAACAACCGTCAATTCGCTGCGCTTCCGGCCTTTCGGTGGTGCGGTTCGGTGGCGTAGCGCTACCGCGCAACCAGCTGCTGACACGTCCGTCGATCCGGAGTGGGAGAACGCGCTGCCGTTTGAAAAGATTCCCGCACCGTCTTTACTCGGATTTCTGAAGGAATTTGGACCTTTTGGTAAATACAAGGATGGTAATCTGTACGATATCAACAAACGATTACGCGAGCTGTACGGTCCAATCTTGCGGATGAACGGTTCGTTTGGGAGGGAAGATTTGGTGATGACGTTCGTACCGGAAGACTTTGAGAAGGTACTGCGCTCGGAGGGTCCCTGGCCAAGGCGTACGGGGATGGATTCGTTCGTGTACTATCGCAAACAGCATCGTCCGGAGTACTTTAAGGGCTATGGCGGATTGCTGGCCGAACAAGGCGAAGACTGGCACAAGATGCGGACGATCGTCAATCCGATCATGATGCAGCCGAAGGTCATCAGGCAGTACGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGTGCGATGAGAATCACGAGTTGCCGGCTGACTTTAACGAATGGTTGAA ] [+] EMBL AY176048 [ TTAACAACCGTCAATTCGCTACGCTTCCGGCCTTTCGGTGGTGCGGTTCGGTGGCGTAGCGCTACCGCGCAACCAGCTGCTGACACGTCCGTCGATCCGGAGTGGGAGAACGCGCTACCGTTTGAAAAGATTCCCGCACCGTCGTTAATCGGATTTCTGAAGGAATTTGGCCCTTTTGGTAAATACAAGGATGGTAATCTGTACGATATCAACAAACGATTGCGCGAGCTGTACGGTCCAATCTTGCGGATGAACGGTTCGTTTGGGAGGGAAGATTTGGTGATGACGTTCGTACCGGAAGACTTTGAGAAGGTACTGCGCTCGGAGGGTCCCTGGCCAAGGCGTACGGGGATGGATTCGTTCGTGTACTATCGCAAACAGCATCGTCCGGAGTACTTTAAGGGCTATGGCGGGTTGCTGGCCGAACAAGGCGAAGACTGGCACAAGATGCGAACGATCGTCAATCCGATCATGATGCAGCCGAAGGTCATCAGGCAGTACGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGCGCGATGAGAAGCAGGAGTTGCCGGCTGACTTTAACGAATGGTTGAACCGTTGGGCGTTCGAAACCATGGGTGTGCTGGTGCTGGACTCGCGGCTTGGTGTGCTGGACAAGGACCAAACACCCGAAGTTACCCATTTCATCGATCTAACGAAAGGGGCAGTCACCTTGTTCTATCAGCTTGATATACTACCATCGATATGGCGGAAGCTGAAAACACCTGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAATTGCTGCCCGAATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACGATGTCGATGGACAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATTCTGTACTGTCTAGCCAAGAACCCTGAGAAGCAGGAGAAACTTCGTGCCGAGTTGCGGAAGATTATGCCCAACAAGGACAGTCCACTCACGCCGGATAATATGAAGAATATGCCGTACCTTAGGGCTTGTATCAAGGAGAGCCTGCGCATGTATCCACCGACCTCGGGCAATGGTCGTTGTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAATGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGCCCGTCGGAGTTCATGCCGGAACGATGGCTTAGCGGGGAGGCCGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCATCCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGTAAGCGGTTGGCAATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAATTACGGCGAGCTGAAGTACAGAGCGACACTTGTCAACATACCTGCGAACGATCTAAAGTTCCAGCTGAAGGAAGT ] [+] EMBL AGA280220 [ tttttTTTAATTGCTACCCGTATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAAGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACGATGTCGATGGACAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATTCTGTACTGTCTAGCCAAGAACCCTGAGAAGCAGGAGAAACTTCGTGCCGAGTTGCGGAAGATTATGCCCAACAAGGACAGTCCACTCACGCCGGATAGTATGAAGAATATGCCGTACCTTAGGGCTTGTATCAAGGAGAGtccg ] [+] EMBL BM645597 [ ccgGGACAGTCCACTCACGCCGGATAGTATGAAGAATATGCCGTACCTTAGGGCTTGTATCAAGGAGAGCCTGCGCATGTATCCACCGACCTCGGGCAATGGTCGTTGTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAATGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGCCCGTCGGAGTTCATGCCGGAACGATGGCTTAGCGGGGAGGCCGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCATCCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGTAAGCGGTTGGCAATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAATTACGGCGAGCTGAAGTACAGAGCGACACTTGTCAACATACCTGCGAACGATCTAAAGTTCCAGCTGAAGGAAGTGAGCGATTGAGCAACTGCTTAGGTAAGGTACTAGTTGGTAAGGGATTACTGTTTT] [-] EMBL AGA281916 [ cTGTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAATGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGTCCGTCGGAGTTCATGCCGGAACGTTGGCTTAGCGGGGAGGCTGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCATCCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGCAAGCGGTTGGCAATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAATTACGGCGAGCTGAAGTACAGAGCGACACTTGT ] consensusID : consensus_7126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 872 fasta sequence [GCAGAATCCGCACGAGGGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGCGCGATGAGAAGCAGGAGTTGCCGGCTGACTTTAACGAATGGTTGAACCGTTGGGCATTCGAAACCATGGGTGTGCTGGTGCTGGACTCACGGCTTGGTGTTCTGGACAAGGACCAAACGCCCGAAGTTACCCATTTCATCGATCTAACGAAAGAGGCAGTCACCTTGTTCTATCAGCTTGATATACTGCCATCGATATGGCGGAAGCTGAAAACACCCGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAATTGCTACCCGTATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACCATGTCGATGGATAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATCTGTACTGTCTGGGCAAGAACCCCGACAAAGCAGGGAGAAACTTTCGTGCCGAGCTGCGGAAAGATTATTGCCCAAACAAGGACAGGTCCANCTTCANCGGCCGGGAATACAGGTCATGAAGGGAAATTCATTGGCCCGTTAGCCTTAAGGGGGCTTGGGTNCTCCAAGGGGAAAAGGCCTTGGAGGGCCANATTGTATTTCCAACNGGAACCTTTCGGGGGGCCACAAAGGGGGATCACCGGTATGGTAACCCCGGGGGAAACAAGGNAACCTTNCGGTATTCTCTGGCACAGGGGCATNATTCGCGGCGGTTTCCCCGCAAAGGGGGCAAATTATCCTTCGGGTAGACGGNGAACTTGG] [+] EMBL BX467836 [GCAGAATCCGCACGAGGGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGCGCGATGAGAAGCAGGAGTTGCCGGCTGACTTTAACGAATGGTTGAACCGTTGGGCATTCGAAACCATGGGTGTGCTGGTGCTGGACTCACGGCTTGGTGTTCTGGACAAGGACCAAACGCCCGAAGTTACCCATTTCATCGATCTAACGAAAGAGGCAGTCACCTTGTTCTATCAGCTTGATATACTGCCATCGATATGGCGGAAGCTGAAAACACCCGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAATTGCTACCCGTATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACCATGTCGATGGATAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATCTGTACTGTCTGGGCAAGAACCCCGACAAAGCAGGGAGAAACTTTCGTGCCGAGCTGCGGAAAGATTATTGCCCAAACAAGGACAGGTCCANCTTCANCGGCCGGGAATACAGGTCATGAAGGGAAATTCATTGGCCCGTTAGCCTTAAGGGGGCTTGGGTNCTCCAAGGGGAAAAGGCCTTGGAGGGCCANATTGTATTTCCAACNGGAACCTTTCGGGGGGCCACAAAGGGGGATCACCGGTATGGTAACCCCGGGGGAAACAAGGNAACCTTNCGGTATTCTCTGGCACAGGGGCATNATTCGCGGCGGTTTCCCCGCAAAGGGGGCAAATTATCCTTCGGGTAGACGGNGAACTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7126#0 CCGGTTCGCGATGCTAAAATTAACAACCGTCAATTCGCTGCGCTTCCGGCCTTTCGGTGG 60 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 TGCGGTTCGGTGGCGTAGCGCTACCGCGCAACCAGCTGCTGACACGTCCGTCGATCCGGA 120 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 GTGGGAGAACGCGCTGCCGTTTGAAAAGATTCCCGCACCGTCTTTACTCGGATTTCTGAA 180 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 GGAATTTGGACCTTTTGGTAAATACAAGGATGGTAATCTGTACGATATCAACAAACGATT 240 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 ACGCGAGCTGTACGGTCCAATCTTGCGGATGAACGGTTCGTTTGGGAGGGAAGATTTGGT 300 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 GATGACGTTCGTACCGGAAGACTTTGAGAAGGTACTGCGCTCGGAGGGTCCCTGGCCAAG 360 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 GCGTACGGGGATGGATTCGTTCGTGTACTATCGCAAACAGCATCGTCCGGAGTACTTTAA 420 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 GGGCTATGGCGGATTGCTGGCCGAACAAGGCGAAGACTGGCACAAGATGCGGACGATCGT 480 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 CAATCCGATCATGATGCAGCCGAAGGTCATCAGGCAGTACGTGGACAAGGTCGATACAGT 540 consensus_7126#1 ---------------------GCAGA--ATCCGCACGAGGGTGGACAAGGTCGATACAGT 37 * ** *** * * ******************** consensus_7126#0 GGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGTGCGATGAGAATCACGAGTTGCCGGC 600 consensus_7126#1 GGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGCGCGATGAGAAGCAGGAGTTGCCGGC 97 ********************************** ********** ** *********** consensus_7126#0 TGACTTTAACGAATGGTTGAACCGTTGGGCGTTCGAAACCATGGGTGTGCTGGTGCTGGA 660 consensus_7126#1 TGACTTTAACGAATGGTTGAACCGTTGGGCATTCGAAACCATGGGTGTGCTGGTGCTGGA 157 ****************************** ***************************** consensus_7126#0 CTCGCGGCTTGGTGTGCTGGACAAGGACCAAACACCCGAAGTTACCCATTTCATCGATCT 720 consensus_7126#1 CTCACGGCTTGGTGTTCTGGACAAGGACCAAACGCCCGAAGTTACCCATTTCATCGATCT 217 *** *********** ***************** ************************** consensus_7126#0 AACGAAAGGGGCAGTCACCTTGTTCTATCAGCTTGATATACTACCATCGATATGGCGGAA 780 consensus_7126#1 AACGAAAGAGGCAGTCACCTTGTTCTATCAGCTTGATATACTGCCATCGATATGGCGGAA 277 ******** ********************************* ***************** consensus_7126#0 GCTGAAAACACCTGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAAT 840 consensus_7126#1 GCTGAAAACACCCGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAAT 337 ************ *********************************************** consensus_7126#0 TGCTGCCCGAATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGA 900 consensus_7126#1 TGCTACCCGTATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGA 397 **** **** ************************************************** consensus_7126#0 CACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACGATGTC 960 consensus_7126#1 CACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACCATGTC 457 ****************************************************** ***** consensus_7126#0 GATGGACAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATTCTGTA 1020 consensus_7126#1 GATGGATAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAAT-CTGTA 516 ****** *********************************************** ***** consensus_7126#0 CTGTCTAGCCAAGAACCCTGA-GAAGCAGG-AGAAACTT-CGTGCCGAGTTGCGGAA-GA 1076 consensus_7126#1 CTGTCTGGGCAAGAACCCCGACAAAGCAGGGAGAAACTTTCGTGCCGAGCTGCGGAAAGA 576 ****** * ********* ** ******* ******** ********* ******* ** consensus_7126#0 TTAT-GCCCAA-CAAGGACAG-TCCACTCACGCCGGATAGTATGAAGAATATGCCGTACC 1133 consensus_7126#1 TTATTGCCCAAACAAGGACAGGTCCANCTTCANCGGCCGG------GAATAC-------- 622 **** ****** ********* **** * *** * ***** consensus_7126#0 TTAGGGCTTGTATCAAGGAGAGCCTGCGCATGTATCCACCGACCTCGGGCAATGGTCGTT 1193 consensus_7126#1 --AGGTC----ATGAAGGGAAATTCATTGGCCCGTTAGCCTTAAGGGGGCTTGGGTNCTC 676 *** * ** **** * * ** **** *** * consensus_7126#0 GTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAA 1253 consensus_7126#1 CAAGGGGAAAAGGCCTTGGAGGGCC---ANATTGTATTTCCAACNGGAACCTTTCGGGGG 733 * ******* *** * ** * ** * ** **** * * ** ** consensus_7126#0 TGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGCCCGTCGGAGTTCATGC 1313 consensus_7126#1 GCCACAAAGGGGGATCACCG-----GTATGGTAACCCCGGGGGAAACAAGGNAACCTTNC 788 * * ** * * * * * ** ** * ** * * * consensus_7126#0 CGGAA-CGATGGCTTAGCGGGGAGGCCGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCAT 1372 consensus_7126#1 GGTATTCTCTGGCACAGGGGCATNATTCGCGGCGGTTTCCCCG----CAAAGGGGGCAAA 844 * * * **** ** ** * ***** *** *** * ** * consensus_7126#0 CCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGTAAGCGGTTGGCA 1432 consensus_7126#1 TTATCCTTCGGGTAGACGGN-GAACTTGG------------------------------- 872 * * ** * ** * * ** consensus_7126#0 ATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAAT 1492 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 TACGGCGAGCTGAAGTACAGAGCGACACTTGTCAACATACCTGCGAACGATCTAAAGTTC 1552 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 CAGCTGAAGGAAGTGAGCGATTGAGCAACTGCTTAGGTAAGGTACTAGTTGGTAAGGGAT 1612 consensus_7126#1 ------------------------------------------------------------ consensus_7126#0 TACTGTTTT 1621 consensus_7126#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||