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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence
[GAATCGCCCGAGGTNTAATGTACCGATTTGNTGGTATTTCTAGGCGACACCACGAAGCGAGCTTGCTTCAATTTTCCNTATTTGTGTGCAGCACATCGAATCTCGATATAAAGCGGNAACGGTTGAAAAAGATTTACACGCGACTATTTCTCTCAGCCGGGCGCGAACTCGTTCTACGCGCAATTGGTGGCCAACTATATGAATCTGTTAGAATATCAAATGGGCGAGCTCCATTCGTCGGGCGGTGGCAGCAAAGCGGTCGCCATTCAGGATAAGTCGGTGCTGGAAACGTTTAAACTACGTCTGCGGGAAGTACAAATGGGGCTGACACCTTGCTGCAGACGAACGACAACCCGTTCAAGCTGAGCGAGTACCACCAGGTCTCGCAGGCCCAGTTCGAACTGGATCGCCTTGAATGAACGTGCGAAGCAGCAGGCGTGGCTAGACTTTGACCACATTTCGAGCGTAAAGCGTGGTTGAATTTACAGCAAAGTCGCTTTACNACTTAACANTTTCCNCCACTCGGATCTGTACCGATATTTGCGGCCTTGCCATTGCACTAACAACGCACACCGGATCCGGGTTCTTGAACAACATTCCTACNGCAGAAAGGGTAAGAGGATCCCGGAAANAGGGCGGGCTTGGACCTTGCGAAGGAAANGGTACAAACACCCAAGCACGGGATTGGTGGATGCGGCTAGGATGCTG]
[+] EMBL AL932940 [GAATCGCCCGAGGTNTAATGTACCGATTTGNTGGTATTTCTAGGCGACACCACGAAGCGAGCTTGCTTCAATTTTCCNTATTTGTGTGCAGCACATCGAATCTCGATATAAAGCGGNAACGGTTGAAAAAGATTTACACGCGACTATTTCTCTCAGCCGGGCGCGAACTCGTTCTACGCGCAATTGGTGGCCAACTATATGAATCTGTTAGAATATCAAATGGGCGAGCTCCATTCGTCGGGCGGTGGCAGCAAAGCGGTCGCCATTCAGGATAAGTCGGTGCTGGAAACGTTTAAACTACGTCTGCGGGAAGTACAAATGGGGCTGACACCTTGCTGCAGACGAACGACAACCCGTTCAAGCTGAGCGAGTACCACCAGGTCTCGCAGGCCCAGTTCGAACTGGATCGCCTTGAATGAACGTGCGAAGCAGCAGGCGTGGCTAGACTTTGACCACATTTCGAGCGTAAAGCGTGGTTGAATTTACAGCAAAGTCGCTTTACNACTTAACANTTTCCNCCACTCGGATCTGTACCGATATTTGCGGCCTTGCCATTGCACTAACAACGCACACCGGATCCGGGTTCTTGAACAACATTCCTACNGCAGAAAGGGTAAGAGGATCCCGGAAANAGGGCGGGCTTGGACCTTGCGAAGGAAANGGTACAAACACCCAAGCACGGGATTGGTGGATGCGGCTAGGATGCTG]
consensusID : consensus_7132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence
[CCGATTCGTCCCCTTGGAAACGTTCTTGTGCGCCGCGCAATTTGTGCAAATGGAATCGAAAGATGACGATTATTGGAACGATTCGGCAAACAAATCATTCAACTTTGATGAAGATGATGTGGCCGTGCTCGAAATAGCGACCAACAACAAACGTAGCCTGTTCGGGGAGGAAACTGCATCGGAAGCAAACTATGGCACTGGTCAGATCGAACTCCCACTCCACACGATCATTTCGGACGAGAATCTCGAGCTGATATTGCAGGAGCAGTCGCGCAATGAAATGACCATCCCGAAGGGCATCTCGCTCGAGGAGGAAGTGAAGCTGCTGCGAAAAAAGATACAGGAGTTTAACTACGCACCATCCACGGAATCGGTCGTGCGGAAGCTTATCCTTGGGAAGCCATGCTCGCTGGAAATGTTTCGCTCGATGGCGGAAAAGGAGCAACTGCTCGACGAGGCCATCGCGTCCGGCAGCGGTAATGCGATTCTGAAAGTTACCCTCTTCCTCGACCAAACGCTGAAGAAGAAACTCTTCTACACGCTTCTTCAAACGCGCCCGGAAGCCGTCTATCATTATGTGAATTATTTGTCGTTGCGATTGAAAGTGACCGAATGTACCGATTTGTTGGTATTTCTAGGCCGACACCACGAAGCGAGCTTGCTTCAATTTTCCA]
[+] EMBL BM642896 [CCGATTCGTCCCCTTGGAAACGTTCTTGTGCGCCGCGCAATTTGTGCAAATGGAATCGAAAGATGACGATTATTGGAACGATTCGGCAAACAAATCATTCAACTTTGATGAAGATGATGTGGCCGTGCTCGAAATAGCGACCAACAACAAACGTAGCCTGTTCGGGGAGGAAACTGCATCGGAAGCAAACTATGGCACTGGTCAGATCGAACTCCCACTCCACACGATCATTTCGGACGAGAATCTCGAGCTGATATTGCAGGAGCAGTCGCGCAATGAAATGACCATCCCGAAGGGCATCTCGCTCGAGGAGGAAGTGAAGCTGCTGCGAAAAAAGATACAGGAGTTTAACTACGCACCATCCACGGAATCGGTCGTGCGGAAGCTTATCCTTGGGAAGCCATGCTCGCTGGAAATGTTTCGCTCGATGGCGGAAAAGGAGCAACTGCTCGACGAGGCCATCGCGTCCGGCAGCGGTAATGCGATTCTGAAAGTTACCCTCTTCCTCGACCAAACGCTGAAGAAGAAACTCTTCTACACGCTTCTTCAAACGCGCCCGGAAGCCGTCTATCATTATGTGAATTATTTGTCGTTGCGATTGAAAGTGACCGAATGTACCGATTTGTTGGTATTTCTAGGCCGACACCACGAAGCGAGCTTGCTTCAATTTTCCA]
[+] EMBL BX628856 [ ACTTTGATGAAGATGATGTGGCCGTGCTCGAAATAGCGACCAACAACAAACGTAGCCTGTTCGGGGAGGAAACTGCATCGGAAGCAAACTATGGCACTGGTCAGATCGAACTCCCACTCCACACGATCATTTCGGACGAGAATCTCGAGCTGATATTGCAGGAGCAGTCGCGCAATGAAATGACCATCCCGAAGGGCATCTCGCTCGAGGAGGAAGTGAAGCTGCTGCGAAAAAAGATACAGGAGTTTAACTACGCACCATCCACGGAATCGGTCGTGCGGAAGCTTATCCTTGGGAAGCCATGCTCGCTGGAAATGTTTCGCTCGATGGCGGAAAAGGAGCAACTGCTCGACGAGGCCATCGCGTCCGGCAGCGGTAATGCGATTCTGAAAGNTACCCTCTTCCTCGACCAAACGCTGAAGAAGAAACTCTTCTACACGC ]
consensusID : consensus_7132#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CTCAGGCACNGAATTCGGCACGATGGAGCGCCGCGCAATTTGTGCAAATNGGAATCGAAAGATGACGATTATTGGAACGATTCGGCAAACAAATCATTCAACTTTGATGAAGATGATGTGGCCGTGCTCGAAATAGCGACCAACAACAAACGTAGCCTGTTCGGGGAGGAAACTTGCATCGGAAGCAAACTATGGCACTGGTCAGATCGAACTCCCATCCACGACGATCATTTTCGGGACGAGAATCTCGGAAGCTGATATTGCACGGAGCAGTCGCGCAATGAAATGACCATCCCGAAAGGGCATCTCGCTCGAGGCAGGAAAGGTGAAAGCTGCTGGCGAACAANANAGGGATACAGGGAAGTTTTAAGCCGTNACCGGCCAANCAATCCGAACGGGGAAATCCGGGTCCACGATTGACCGGAAAGGCGTTTATTAGCCCCTTTTGGGGGGAAAAGGGCCCCAATTGGGCTTCCAGGCCTTTGGNCACANAAATGGGTTTATCACGGGCTTCCGGAATTTGGGGACCGAGGAACACACACGGGGACAGGGCCAAAAGCTTTGGGCATTCCCGGAACNCGCGAGAGGGGCCCCACATTCAGAGCGGTTTNCCGCGGNGGCCAAG]
[+] EMBL BX468872 [CTCAGGCACNGAATTCGGCACGATGGAGCGCCGCGCAATTTGTGCAAATNGGAATCGAAAGATGACGATTATTGGAACGATTCGGCAAACAAATCATTCAACTTTGATGAAGATGATGTGGCCGTGCTCGAAATAGCGACCAACAACAAACGTAGCCTGTTCGGGGAGGAAACTTGCATCGGAAGCAAACTATGGCACTGGTCAGATCGAACTCCCATCCACGACGATCATTTTCGGGACGAGAATCTCGGAAGCTGATATTGCACGGAGCAGTCGCGCAATGAAATGACCATCCCGAAAGGGCATCTCGCTCGAGGCAGGAAAGGTGAAAGCTGCTGGCGAACAANANAGGGATACAGGGAAGTTTTAAGCCGTNACCGGCCAANCAATCCGAACGGGGAAATCCGGGTCCACGATTGACCGGAAAGGCGTTTATTAGCCCCTTTTGGGGGGAAAAGGGCCCCAATTGGGCTTCCAGGCCTTTGGNCACANAAATGGGTTTATCACGGGCTTCCGGAATTTGGGGACCGAGGAACACACACGGGGACAGGGCCAAAAGCTTTGGGCATTCCCGGAACNCGCGAGAGGGGCCCCACATTCAGAGCGGTTTNCCGCGGNGGCCAAG]
consensusID : consensus_7132#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[AGTCGGTGCTGGAAACGTTAAACTACGTCTGCGGGAAGTACAAATGGGGCGACACCTCGCTGCAGACAAACGACAACCCGTTCAAGCTGAGCGAGTACCACCAGGTCTCGCAGGCCCAGTTCGAATGGATCGCCTTGAATGAACGTGCGAAGCAGCAGGCTTGGTTAGACTTTGACCACATTTTCGAGCGTAAAGCGTGGTTGAATTTAAAGCAAAAGTCGTTTAAAATTAACATTCCCATCGATCGCACGATATTGCGGCTGCATGCACTGCACGCACCGGATCCGGTTCTGAACACATTCCTCGCGAAGGTAGAGGATCCGCAAAGGCGGCTGGCACTTGCGAGGAAGGTACAATCCAAGCACGGCATTGTGGATGCGCTGGTGCTGCTGAAAGATCGCGCCGAGCTGGAGGCTTACCGAAGCACACTGGATAGCGGGACGGAGGAACGTTTGTATGCGGAAAATGCTCTAAAATCATTGAACAACAAATGGAAAAGTGATGCAATGAAGTTAATAAAATGATGATGAAATAAATACCACGCAACGCGTTATTTGAATGAAAAAAAAAACCCACGCGTCCGCGG]
[-] EMBL BM606166 [AGTCGGTGCTGGAAACGTTAAACTACGTCTGCGGGAAGTACAAATGGGGCGACACCTCGCTGCAGACAAACGACAACCCGTTCAAGCTGAGCGAGTACCACCAGGTCTCGCAGGCCCAGTTCGAATGGATCGCCTTGAATGAACGTGCGAAGCAGCAGGCTTGGTTAGACTTTGACCACATTTTCGAGCGTAAAGCGTGGTTGAATTTAAAGCAAAAGTCGTTTAAAATTAACATTCCCATCGATCGCACGATATTGCGGCTGCATGCACTGCACGCACCGGATCCGGTTCTGAACACATTCCTCGCGAAGGTAGAGGATCCGCAAAGGCGGCTGGCACTTGCGAGGAAGGTACAATCCAAGCACGGCATTGTGGATGCGCTGGTGCTGCTGAAAGATCGCGCCGAGCTGGAGGCTTACCGAAGCACACTGGATAGCGGGACGGAGGAACGTTTGTATGCGGAAAATGCTCTAAAATCATTGAACAACAAATGGAAAAGTGATGCAATGAAGTTAATAAAATGATGATGAAATAAATACCACGCAACGCGTTATTTGAATGAAAAAAAAAACCCACGCGTCCGCGG]
consensusID : consensus_7132#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[CACATTTTCGAGGCTGTCAAGCGTGGTTTGAATTTAAGAGCCAGAAGTCGTCTTAAACACTTAACATTCCCATCGTATCGTACGATATTGCGGCTGNCATGCACTACACGCACCCGGATCCGGTTCTGAACACATTCCTCGCGAAGGTACGAGGATCCGCCAAAGGCGGCCTGGCACTTTGCGTAGGAAGGTACAATCCAAGCACCGGCATTGTGGATGCGCCTGGTGCTNCCTGAAAGATCGCGCCGAGCTGGAGGCTTACCGAAGCACACTGGATAGCCGGGACCGGAGGAACGCTTTGTATGCCGGAAAATGCTCTTAAGTCATTGAGACACACCAAATGGAAAAGTGATGCAATGAAGTTAATAAATGATGATGAAATAAATACCACCGCAACGCGTTATTTGAATGAGAAAAACACGTAACAATAACAAGGAAATAAATAACCAACCANACAGACGGACCTGTGCGGCC]
[-] EMBL BX466882 [CACATTTTCGAGGCTGTCAAGCGTGGTTTGAATTTAAGAGCCAGAAGTCGTCTTAAACACTTAACATTCCCATCGTATCGTACGATATTGCGGCTGNCATGCACTACACGCACCCGGATCCGGTTCTGAACACATTCCTCGCGAAGGTACGAGGATCCGCCAAAGGCGGCCTGGCACTTTGCGTAGGAAGGTACAATCCAAGCACCGGCATTGTGGATGCGCCTGGTGCTNCCTGAAAGATCGCGCCGAGCTGGAGGCTTACCGAAGCACACTGGATAGCCGGGACCGGAGGAACGCTTTGTATGCCGGAAAATGCTCTTAAGTCATTGAGACACACCAAATGGAAAAGTGATGCAATGAAGTTAATAAATGATGATGAAATAAATACCACCGCAACGCGTTATTTGAATGAGAAAAACACGTAACAATAACAAGGAAATAAATAACCAACCANACAGACGGACCTGTGCGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7132#3 AGTCGGTGCTGGAAACGTTAAACTACGTCTGCGGGAAGTACAAATGGGGCGACACCTCGC 60
consensus_7132#4 ------------------------------------------------------------
consensus_7132#0 -----GAATCGCCCGAGGTNTAATGTACCGATTTGNTGGTATTTCTAGGCGACACCACGA 55
consensus_7132#1 ---CCGATTCGTCCCCTTGGAAACGTTCTTGTGCGCCGCGCAATTTGTGCAAATGG-AAT 56
consensus_7132#2 ---CTCAGGCACNGAATTCGGCACGAT--GGAGCGCCGCGCAATTTGTGCAAATNGGAAT 55
consensus_7132#3 TGCAGACAAACGACAACCCGTTCAAGCTG-AGCGAGTACCACCAGGTCTCGCAGGCCCAG 119
consensus_7132#4 ------------------------------------------------------------
consensus_7132#0 AGCGAGCTTGCTTCAATTTTCCNTATTTG-TGTGCAGCACATCGAATCTCG-------AT 107
consensus_7132#1 CGAAAGATGACGATTATTGGAACGATTCGGCAAACAAATCATTCAACTTTGATGA---AG 113
consensus_7132#2 CGAAAGATGACGATTATTGGAACGATTCGGCAAACAAATCATTCAACTTTGATGA---AG 112
consensus_7132#3 TTCGAATGGATCGCCTTGAATGAACGTGCGAAGCAGCAGGCTTGGTTAGACTTTGACCAC 179
consensus_7132#4 ---------------------------------------------------------CAC 3
consensus_7132#0 ATAAAGCGGNAACGGTTGAAAAAGATTTACACGCGACTATTTCTCTCAGCCGGGCGCGAA 167
consensus_7132#1 ATGATGTGGCCGTGCTCGAAATAGCGACCAACAACAAACGTAGCCTGTTCGGGGAGGAAA 173
consensus_7132#2 ATGATGTGGCCGTGCTCGAAATAGCGACCAACAACAAACGTAGCCTGTTCGGGGAGGAAA 172
*
consensus_7132#3 ATTTTCGAG--CGTAAAGCGTGGTT-GAATTTAAAG--CAAAAGTCGTTTAAAA---TTA 231
consensus_7132#4 ATTTTCGAGGCTGTCAAGCGTGGTTTGAATTTAAGAGCCAGAAGTCGTCTTAAACACTTA 63
consensus_7132#0 CTCGTTCTACGCGCAATTGGTGGCC-AACTATATGAATCTGTTAGAATATCAAATGGGCG 226
consensus_7132#1 CT-GCATCGGAAGCAAACTATGGC--------ACTGGTCAGATCGAACTCCCACT-CCAC 223
consensus_7132#2 CTTGCATCGGAAGCAAACTATGGC--------ACTGGTCAGATCGAACTCCCATC-CACG 223
* * * *** * * *
consensus_7132#3 ACATTC--CCATCG-ATCGCA-CGATATTGCGGCTGC-ATGCACTGCA---CGCACC-GG 282
consensus_7132#4 ACATTC--CCATCGTATCGTA-CGATATTGCGGCTGNCATGCACTACA---CGCACCCGG 117
consensus_7132#0 AGCTCCATTCGTCGGGCGGTGGCAGCAAAGCGGTCGCCATTCAGGATAAGTCGGTGCTGG 286
consensus_7132#1 ACGATCATTTC--GGACGAGA-----ATCTCG--AGCTG-ATATTGCA----GGAGC-AG 268
consensus_7132#2 ACGATCATTTTCGGGACGAGA-----ATCTCGGAAGCTG-ATATTGCA---CGGAGC-AG 273
* * * * ** * * * * * *
consensus_7132#3 ATCCGGTTCTGAACACATTCCTCGCGAAG---GTA-GAGGAT------CCGC-AAAGGCG 331
consensus_7132#4 ATCCGGTTCTGAACACATTCCTCGCGAAG---GTACGAGGAT------CCGCCAAAGGCG 168
consensus_7132#0 AAACG--TTTAAACTACGTCTGCGGGAAGTACAAATGGGGCTGACACCTTGCTGCAGACG 344
consensus_7132#1 TCGCGCAATGAAATGACCATCCCGAA-GG---GCATCTCGCT----CGAGG-AGGAAGTG 319
consensus_7132#2 TCGCGCAATGAAATGACCATCCCGAAAGG---GCATCTCGCT----CGAGGCAGGAAAGG 326
** ** ** * * * * * * *
consensus_7132#3 GC-TGGCACTT-GCG-AGGAAGGTACAATCCAAGCAC-GGCATTGTGGATGCGC-TGGTG 386
consensus_7132#4 GCCTGGCACTTTGCGTAGGAAGGTACAATCCAAGCACCGGCATTGTGGATGCGCCTGGTG 228
consensus_7132#0 AA-CGACAACCCGTTCAAGCTGAGCGAGTACCACCA--GGTCTCGCAGGCCCAGTTCGAA 401
consensus_7132#1 ---AAGCTGCTGC------GAAAAAAGATACAGGAG---TTTAACTACGCACCATCCACG 367
consensus_7132#2 TGAAAGCTGCTGGCGAACAANANAGGGATACAGGGAAGTTTTAAGCCGTNACCGGCCAAN 386
* * * *
consensus_7132#3 CTG------C-TGAAAGATCGCGCCGAGCTGGAGGCTTACCGAAGCACACTGGATAGCGG 439
consensus_7132#4 CTN------CCTGAAAGATCGCGCCGAGCTGGAGGCTTACCGAAGCACACTGGATAGCCG 282
consensus_7132#0 CTGGATCGCCTTGAATGAACGTGCGAAGCAGCAGGCGTGGCTAGACTTTGACCACATTTC 461
consensus_7132#1 GAATC-GGTCGTGCGGAAGCTTATCCTTGGGAAGCCATGCTCGCTGGAAATGTTTCGCTC 426
consensus_7132#2 CAATCCGAACGGGGAAATCCGGGTCCACGATTGACCGGAAAGGCGTTTATTAGCCCCTTT 446
* * * *
consensus_7132#3 GA--CGGAGGAACG-TTTGTATGC-GGAAAATGCTCTAAAATCATTGA---A---CAACA 489
consensus_7132#4 GGACCGGAGGAACGCTTTGTATGCCGGAAAATGCTCTTAAGTCATTGAGACA---CACCA 339
consensus_7132#0 GAGCGTAAAGCGTGGTTGAATTTACAGCAAAGTCGCTTTACNACTTAA--CA---NTTTC 516
consensus_7132#1 GATGGCGGAAAAGGAGC-AACTGCTCGACGAGGCCATCGCGTCCGGCAGCGG-----TAA 480
consensus_7132#2 TGGGGGGAAAAGGGCCCCAATTGGGCTTCCAGGCCTTTGGNCACANAAATGGGTTTATCA 506
* * * * * *
consensus_7132#3 AATGGAAAAGTGATGCAATGAAGTTAATAAAATGATGATGAAATAAATACCAC-GCAAC- 547
consensus_7132#4 AATGGAAAAGTGATGCAATGAAGTTAATAAA-TGATGATGAAATAAATACCACCGCAAC- 397
consensus_7132#0 CNCCACTCGGATCTGTACCGATATTTGCGGCCTTGCCATTGCACTAACAACGC-ACACC- 574
consensus_7132#1 TGCGATTCTGAAAGTTACCCTCTTCCTCGACCAAACGCTGAAGAAGAAACTCTT-CTACA 539
consensus_7132#2 CGGGCTTCCGGAATTTGGGGAC--CGAGGAACACACACGGGGACAGGGCCAAAAGCTTTG 564
* *
consensus_7132#3 -GCGTTATTTGAATGAAAAAAAAAACCCACGCGTCCGCGG-------------------- 586
consensus_7132#4 -GCGTTATTTGAATGAGAAAAACACGTAACAATAACAAGGAAATAAATAACCAACCANAC 456
consensus_7132#0 -GGATCCGGGTTCTTGAACAACATTCCTACNGCAGAAAGGGTAAGAGGATCCCGGAAANA 633
consensus_7132#1 CGCTTCTTCAAACGCGCCCGGAAGCCGTCTATCATTATGTGAATTATTTGTCGTTGCGAT 599
consensus_7132#2 GGCATTCCCGGA-ACNCGCGAGAGGGGCCCCACATTCAG--AGCGGTTTNCCGCGGNGGC 621
* * *
consensus_7132#3 ------------------------------------------------------------
consensus_7132#4 AGACGGACCTGTGCGGCC------------------------------------------ 474
consensus_7132#0 GGGCGGGCTTGGACCTTGCGAAGGAAANGGTACAAACACCCAAGCACGGGATTGGTGGAT 693
consensus_7132#1 TGAAAGTGACCGAATGTACCGATTTGTTGGTATTTCTAGGCCGACACCACGAAGCGAGCT 659
consensus_7132#2 CAAG-------------------------------------------------------- 625
consensus_7132#3 ---------------
consensus_7132#4 ---------------
consensus_7132#0 GCGGCTAGGATGCTG 708
consensus_7132#1 TGCTTCAATTTTCCA 674
consensus_7132#2 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||