These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 904 fasta sequence [CCGCGGACGCGTGGGTTCGAGAGAGCTCACGAACGCAGCAACAAGCTTAGAAAAATGCCCGATAAACCCGTAAAACAGGATAGCAAAAAGGACGATGGAGCGGAGCTGGAAACGCAGATCATCATGCGAATGCCGAAGGAACCTGCTGCGGCGTTGCGCGAAGCGATACAAAGTGGAGCCAACAACCTGAAGGATCGGCTCTTCATTCGGCTGGAAAATGAGCTGCGCTATGGCGAGGTTCGATTTGACCATTGGTTGCTTCACGCGAAGGTGGTCGATCTTCCCACGATCATTGAGTCGTTAAAAACGATCGACTCGAAAAATTTCTACAAAACAGCGGACATATGTCAGATGATGATTTGCAAGGAGGAACCCGAACAGCAATCGGCTGAAGAGGAATCACCCAACAAGAACAAAAAGAAGGACCCGAACAAGGTGGACAAGAAGTTCCTGTGGCCGCACGGCGTGACGCCGCCGTGCAAAAACATACGCAAGCGCCGTTTTCGCAAAACGCTCAAGAAAAAGTATGTCGAAGCACCGGAAATCGAGAAAGAAGTGAAGCGTTTGCTGCGCGTCGACAACGAGGCGGTCAACGTGAAGTGGGAACTGATCACCGAGGACGAGGATCCGAACAAACCGTCGCCGGGTTCGGGTAACGAGGCAGGGCCACCGCACAAGAGCCCCTCGAAAAACACGAAAAAGGGAGACCACAACAAGGACGTGGGCGAGCATGACATCTTCGGCGAGGAAGTGTCCGACTCGGACGAGGAGGATAATCCGATCAACAAAAACATCGATCTGGACGAAACGAGCCGACTGTCGGCAGAAGCCGAANACAGTCGGCTGTCNGATTCCTGCTCCTACCAGGGAACGCAACAGGAGCGCGACAGGAACCCGGCACTGG] [+] EMBL BM635542 [CCGCGGACGCGTGGGTTCGAGAGAGCTCACGAACGCAGCAACAAGCTTAGAAAAATGCCCGATAAACCCGTAAAACAGGATAGCAAAAAGGACGATGGAGCGGAGCTGGAAACGCAGATCATCATGCGAATGCCGAAGGAACCTGCTGCGGCGTTGCGCGAAGCGATACAAAGTGGAGCCAACAACCTGAAGGATCGGCTCTTCATTCGGCTGGAAAATGAGCTGCGCTATGGCGAGGTTCGATTTGACCATTGGTTGCTTCACGCGAAGGTGGTCGATCTTCCCACGATCATTGAGTCGTTAAAAACGATCGACTCGAAAAATTTCTACAAAACAGCGGACATATGTCAGATGATGATTTGCAAGGAGGAACCCGAACAGCAATCGGCTGAAGAGGAATCACCCAACAAGAACAAAAAGAAGGACCCGAACAAGGTGGACAAGAAGTTCCTGTGGCCGCACGGCGTGACGCCGCCGTGCAAAAACATACGCAAGCGCCGTTTTCGCAAAACGCTCAAGAAAAAGTATGTCGAAGCACCGGAAATCGAGAAAGAAGTGAAGCGTTTGCTGCGCGTCGACAACGAGGCGGTCAACGTGAAGTGGGAACTGATCACCGAGGACGAGGATCCGAACAAACCGTCGCCGGGTTCGGGTAACGAGGCAGGGCCACCGCACAAGAGCCCCTCGAAAAACACGA ] [+] EMBL BM586327 [ ccgGAGAGAGCTCACGAACGCAGCAACAAGCTTAGAAAAATGCCCGATAAACCCGTAAAACAGGATAGCAAAAAGGACGATGGAGCGGAGCTGGAAACGCAGATCATCATGCGAATGCCGAAGGAACCTGTTGCGGCGTTGCGCGAAGCGATACAAAGTGGAGCCAACAACCTGAAGGATCGGCTCTTCATTCGGCTGGAAAATGAGCTGCGCTATGGCGAGGTTCGATTTGACCATTGGTTGCTTCACGCGAAGGTGGTCGATCTTCCCACGATCATTGAGTCGTTAAAAACGATCGACTCGAAAAATTTCTACAAAACAGCGGACATATGTCAGATGATGATTTGCAAGGAGGAACCCGAACAGCAATCGGCTGAAGAGGAATCACCCAACAAGAACAAAAAGAAGGACCCGAACAAGGTGGACAAGAAGTTCCTGTGGCCGCACGGCGTGACGCCGCCGTGCAAAAACATACGCAAGCGCCGTTTTCGCAAAACGCTCAAGAAAAAGTATGTCGAAGCACCGGAAATCGAGAAAGAAGTGAAGCGTTTGCTGCGCGTCGACAACGAGGCGGTCAACGTGAAGTGGGAACTGATCACCGAGGACGAGGATCCGAACAAACCGTCGCCGGGTTCGGGTAA ] [+] EMBL BM590910 [ ccGCTCACGAACGCAGCAACAAGCTTAGAAAAATGCCCGATAAACCCGTAAAACAGGATAGCAAAAAGGACGATGGAGCGGAGCTGGAAACGCAGATCATCATGCGAATGCCGAAGGAACCTGCTGCGGCGTTGCGCGAAGCGATACAAAGTGGAGCCAACAACCTGAAGGATCGGCTCTTCATTCGGCTGGAAAATGAGCTGCGCTATGGCGAGGTTCGATTTGACCATTGGTTGCTTCACGCGAAGGTGGTCGATCTTCCCACGATCATTGAGTCGTTAAAAACGATCGACTCGAAAAATTTCTACAAAACAGCGGACATATGTCAGATGATGATTTGCAAGGAGGAACCCGAACAGCAATCGGCTGAAGAGGAATCACCCAACAAGAACAAAAAGAAGGACCCGAACAAGGTGGACAAGAAGTTCCTGTGGCCGCACGGCGTGACGCCGCCGTGCAAAAACATACGCAAGCGCCGTTTTCGCAAAACGCTCAAGAAAAAGTATGTCGAAGCACCGGAAATCGAGAAAGAAGTGAAGCGTTTGCTGCGCGTCGACAACGAGGCGGTCAACGTGAAGTGGGAACTGATCACCGAGGACGAGGATCCGAACAAACCGTCGCCGGGTTCGGGTAACGAGGCAGGGC ] [+] EMBL BX622682 [ ATAGTAAAAAGGACGATGGAGCGGAGCTGGAAACGCAGATCATCATGCGAATGCCGAAGGAACCTGCTGCGGCGTTGCGCGAAGCGATACAAAGTGGAGCCAACAACCTGAAGGATCGGCTCTTCATTCGGCTGGAAAATGAGCTGCGCTATGGCGAGGTTCGATTTGACCATTGGTTGCTTCACGCGAAGGTGGTCGATCTTCCCACGATCATTGAGTCGTTAAAAACGATCGACTCGAAAAATTTCTACAAAACAGCGGACATATGTCAGATGATGATTTGCAAGGAGGAACCCGAACAGCAATCGGCTGAAGAGGAATCACCCAACAAGAACAAAAAGAAGGACCCGAACAAGGTGGACAAGAAGTTCCTATGGCCGCACGGCGTGACGCCGCCGTGCAAAAACATACGCAAGCGCCGTTTTCGCAAAACACTCAAGAAAAAGTACGTCGAAGCACCGGAAATCGAGAAAGAAGTGAAGCGTTTGCTGCGCGTCGACAACGAGGCGGTCAACGTGAAGTGGGAACTGATCACCGAGGACGAGGATCCGAACAAACCGTCGCCGGGTTCGGGTAACGAGGCAGGGGCACCGCACAAGAGCCCCTCGAAAAACACGAAAAAGGGAGACCACAACAAGGACGTGGGCGAGCATGACATCTTCGGCGAGGAAGTGTCCGACTCGGACGAGGAGGATAATCCGATCAACAAAAACATCGATCTGGACGAAACGAGCCGACTGTCGGCAGAAGCCGAANACAGTCGGCTGTCNGATTCCTGCTCCTACCAGGGAACGCAACAGGAGCGCGACAGGAACCCGGCACTGG] [+] EMBL BX624995 [ AAAAAGGACGATGGAGCGGAGCTGGAAACGCAGATCATCATGCGAATGCCGAAGGAACCTGCTGCGGCGTTGCGCGAAGCGATACAAAGTGGAGCCAACAACCTGAAGGATCGGCTCTTCATTCGGCTGGAAAATGAGCTGCGCTATGGCGAGGTTCGATTTGACCATTGGTTGCTTCACGCGAAGGTGGTCGATCTTCCCACGATCATTGAGTCGTTAAAAACGATCGACTCGAAAAATTTCTACAAAACAGCGGACATATGTCAGATGATGATTTGCAAGGAGGAACCCGAACAGCAATCGGCTGAAGAGGAATCACCCAACAAGAACAAAAAGAAGGACCCGAACAAGGTGGACAAGAAGTTCCTGTGGCCGCACGGCGTGACGCCGCCGTGCAAAAACATACGCAAGCGCCGTTTTCGCAAAACGCTCAAGAAAAAGTATGTCGAAGCACCGGAAATCGAGAAAGAAGTGAAGCGTTTGCTGCGCGTCGACAACGAGGCGGTCAACGTGAAGTGGGAACTGATCACCGAGGACGAGGATCCGAACAAACCGTCGCCGGGTTCGGGTAACGAGGCAGGGCCACCGCACAAGAGCCCCTCGAAAAACACGAAAAAGGGAGACCACAACAAGGACGTGGGCGAGCATGACATCTTCGGCGAGGAAGTGTCCGACTCGGACGAGGAGGATAATCCGATCAACAAAAACATTGATCTGGACGAAACGAGCCGAC ] consensusID : consensus_7137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [AACGCAACAGGAGCGCGACAGGAACCCGGCACTGGAGTTCAACAAGAGCATGTTCAGTGGAGCCGGTTCCAGTAGCGGATATAGGGCGGCCCGGCGACCTGACACAGGGGCGAGCAGTGCGGGCGGATCGAAGTCGATGTCATTCTTCCAGGGAGATAATAGTTCGCGTTTGGTTTCCGACAACG] [+] EMBL CNS099PU [AACGCAACAGGAGCGCGACAGGAACCCGGCACTGGAGTTCAACAAGAGCATGTTCAGTGGAGCCGGTTCCAGTAGCGGATATAGGGCGGCCCGGCGACCTGACACAGGGGCGAGCAGTGCGGGCGGATCGAAGTCGATGTCATTCTTCCAGGGAGATAATAGTTCGCGTTTGGTTTCCGACAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7137#0 CCGCGGACGCGTGGGTTCGAGAGAGCTCACGAACGCAGCAACAAGCTTAGAAAAATGCCC 60 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 GATAAACCCGTAAAACAGGATAGCAAAAAGGACGATGGAGCGGAGCTGGAAACGCAGATC 120 consensus_7137#1 -------------------AACGCAACAGGAGCG-CGACAGGAACCCGGCACTGGAGTTC 40 * **** * * ** * * * * ** * * ** ** consensus_7137#0 ATCATGCGAATGCCGAAGGAACCTGCTGCGGCGTTGCGCGAAGCGATACAAAGTGGAGCC 180 consensus_7137#1 AACAAGAGCATGTTCAGTGGAGCCG-------GTTCCAGTAGCGGATATAGGGCGGC-CC 92 * ** * * *** * * * * * *** * * **** * * ** ** consensus_7137#0 AACAACCTGAAGGATCGGCTCTTCATTCGGCTGGA---AAATGAGCTGCGCTATGGCGAG 237 consensus_7137#1 GGCGACCTGACACAGGGGCGAGCAGTGCGGGCGGATCGAAGTCGATGTCATTCTTCCAGG 152 * ****** * *** * *** *** ** * * * * * * consensus_7137#0 GTTCGATTTGACCATTGGTTGCTTCACGCGAAGGTGGTCGATCTTCCCACGATCATTGAG 297 consensus_7137#1 GAGATAATAGTTCGC-GTTTGGTTTCCGACAACG-------------------------- 185 * * * * * * *** ** ** ** * consensus_7137#0 TCGTTAAAAACGATCGACTCGAAAAATTTCTACAAAACAGCGGACATATGTCAGATGATG 357 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 ATTTGCAAGGAGGAACCCGAACAGCAATCGGCTGAAGAGGAATCACCCAACAAGAACAAA 417 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 AAGAAGGACCCGAACAAGGTGGACAAGAAGTTCCTGTGGCCGCACGGCGTGACGCCGCCG 477 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 TGCAAAAACATACGCAAGCGCCGTTTTCGCAAAACGCTCAAGAAAAAGTATGTCGAAGCA 537 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 CCGGAAATCGAGAAAGAAGTGAAGCGTTTGCTGCGCGTCGACAACGAGGCGGTCAACGTG 597 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 AAGTGGGAACTGATCACCGAGGACGAGGATCCGAACAAACCGTCGCCGGGTTCGGGTAAC 657 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 GAGGCAGGGCCACCGCACAAGAGCCCCTCGAAAAACACGAAAAAGGGAGACCACAACAAG 717 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 GACGTGGGCGAGCATGACATCTTCGGCGAGGAAGTGTCCGACTCGGACGAGGAGGATAAT 777 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 CCGATCAACAAAAACATCGATCTGGACGAAACGAGCCGACTGTCGGCAGAAGCCGAANAC 837 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 AGTCGGCTGTCNGATTCCTGCTCCTACCAGGGAACGCAACAGGAGCGCGACAGGAACCCG 897 consensus_7137#1 ------------------------------------------------------------ consensus_7137#0 GCACTGG 904 consensus_7137#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||