These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 960 fasta sequence [GTGCTTTCCAATAAGTGTCACTGGCTCCCGACAGGGCTCAGGCGTTTTCGGTAGAGAATGTTTGCTATCTCTTCTACGAAGAGGGTAGCACTGGTTTTGTGCCGTAGTTTGTGCTTCTTTTGTTTTCATCTCTTGAATGTTGCTTTTTAACTAGTAAAGCAACGTTTTAACGACCTTTTTAAGTGCCCGATATACACTCACACACACCAGCGTATAGTGGAATGTGCTTGTATGCTGTGTTTTAACCAAAAGCCAACAGAACAAGTGGAAAGGGGAAAAGATCGCGATCGTTCCTGCCTGTTGACCATGTACATTAAATCTGGCCACCGTTTTCTCAGCGATAAAGGTCAAATCATTTTCCCCGGACCACCGACCCGTTCGCCTGCGCTGTACTATCAGACGAGCACCGTGCCCGCGACCACAACCACCACGACGACCACGATGGCTACCCCACCCGGCGGTGTTAGTGATGAGAATGGGAACTACATAGTGCCCGACATGTGGCAGAGCAAATCGACTACCGGATCGGACATGCTGTCGGATAAGATACAGATGTTCTACATCTACATCACCGTCACGATTACGTCCGTCTTCATTATAGTTGTGCTCGGGATTTTCGGCTACATGTGCTACAAAAGGAAAGGATTCCAAAACATCGATGGCCCACAGTCGCCCATCGAAACTACGCGGCGAAGAAGCAGCACCCACCGATCCACTCGAANGTACTCGCGTAACATGTCCAAGGAGANGGAAGCCGCCGCTTCCGCTACTACCACCGANGACAACCCGGGACAAACGTTGCTGCGGTAAACCAGGCGATACTCACAGGAAGCGATTTTTCTATTTGATCATATTTTTACAAACAACGGTCGCCTTTTTCGCACAGCAGTTTCGTGCGATGTAAATTATCTAGTTGAGGGACAAATTATACTACTCTAGACGATGCAATAAATTAGTGAT] [+] EMBL BX623280 [GTGCTTTCCAATAAGTGTCACTGGCTCCCGACAGGGCTCAGGCGTTTTCGGTAGAGAATGTTTGCTATCTCTTCTACGAAGAGGGTAGCACTGGTTTTGTGCCGTAGTTTGTGCTTCTTTTGTTTTCATCTCTTGAATGTTGCTTTTTAACTAGTAAAGCAACGTTTTAACGACCTTTTTAAGTGCCCGATATACACTCACACACACCAGCGTATAGTGGAATGTGCTTGTATGCTGTGTTTTAACCAAAAGCCAACAGAACAAGTGGAAAGGGGAAAAGATCGCGATCGTTCCTGCCTGTTGACCATGTACATTAAATCTGGCCACCGTTTTCTCAGCGATAAAGGTCAAATCATTTTCCCCGGACCACCGACCCGTTCGCCTGCGCTGTACTATCAGACGAGCACCGTGCCCGCGACCACAACCACCACGACGACCACGATGGCTACCCCACCCGGCGGTGTTAGTGATGAGAATGGGAACTACATAGTGCCCGACATGTGGCAGAGCAAATCGACTACCGGATCGGACATGCTGTCGGATAAGATACAGATGTTCTACATCTACATCACCGTCACGATTACGTCCGTCTTCATTATAGTTGTGCTCGGGATTTTCGGCTACATGTGCTACAAAAGGAAAGGATTCCAAAACATCGATGGCCCACAGTCGCCCATCGAAACTACGCGGCGAAGAAGCAGCACCCACCGATCCACTCGAANGTACTCGCGTAACATGTCCAAGGAGANGGAAGCCGCCGCTTCCGCTACTACCACCGANGACAACCCGGGACAAACGTTGCTGCGGTAAACCAGG ] [+] EMBL BX624989 [ ATAAGTGTCACTGGCTCCCGACAGGGCTCAGGCGTTTTCGGTAGAGAATGTTTGCTATCTCTTCTACGAAGAGGGTAGCACTGGTTTTGTGCCGTAGTTTGTGCTTCTTTTGTTTTCATCTCTTGAATGTTGCTTTTTAACTAGTAAAGCAACGTTTTAACGACCTTTTTAAGTGCCCGATATACACTCACACACACCAGCGTATAGTGGAATGTGCTTGTATGCTGTGTTTTAACCAAAAGCCAACAGAACAAGTGGAAAGGGGAAAAGATCGCGATCGTTCCTGCCTGTTGACCATGTACATTAAATCTGGCCACCGTTTTCTCAGCGATAAAGGTCAAATCATTTTCCCCGGACCACCGACCCGTTCGCCTGCGCTGTACTATCAGACGAGCACCGTGCCCGCGACCACAACCACCACGACGACCACGATGGCTACCCCACCCGGCGGTGTTAGTGATGAGAATGGGAACTACATAGTGCCCGACATGTGGCAGAGCAAATCGACTACCG ] [+] EMBL BM628347 [ TGTGCTTCTTTTGGTTTCATCTCTTGCATGTTGCTTTTTAAGTAGTAAAGCAACGATTTAACGACCTTTTTAAGTGCCCGATATACACTCACACACACCATCGTATAGTGGAATGTGCTTTTATGCTGGGTTTTAACCTGAAGCCAACAGAACAAGTGGAAAGGGGAAAAGATCGCGATCGTTCCTGCCTGTTGACCATGTACATTAAATCTGGCCACCGTTTTCTCAGCGATAAAGGTCAAATCATTTTCCCCGGACCACCGACCCGATCGCCTGCGCTGTACTATCAGATGAGCACCGTGACCGCGACCACGACCACCACG ] [+] EMBL BX612341 [ CAGACGAGCACCGTGCCCGCGACCACAACCACCACGACGACCACGATGGCGACCCCACCCGGCGGGGTTAGTGATGAGAATGGGAACTACATAGGGCCCGACATGTGGCAGAGCAAATCGACTACCGGATCGGACATGCTGTCGGATAAGAAACAGATGTTCTACATCTACATCACCGTCACGATTACGTCCGTCTTCATTATAGTTGTGCTCGGGATTTTCGGCTACATGTGCTACAAAAGGAAAGGAATCCAAAACATCGATGGCCCACAGT ] [+] EMBL BX610130 [ GCACCGTGCCCGCGACCACAACCACCACGACGACCACGATGGCTACCCCACCCGGCGGTGTTAGTGATGAGAATGGGAACTACATAGTGCCCGACATGTGGCAGAGCAAATCGACTACCGGATCGGACATGCTGTCGGATAAGATACAGATGTTCTACATCTACATCACCGTCACGATTACGTCCGTCTTCATTATAGTTGTGCTCGGGATTTTCGGCTACATGTGCTACAAAAGGAAAGGATTCCAAAACATCGATGGCCCACAGTCGCCCATCGAAACTACGCGGCGAAGAAGCAGCACCCACCGATCCACTCGAAGGTACTCGCGTAACATGTCCAAGGAGAGGGAAGCCGCCGCTTCCGCTACTACCACCGAGGACAACCCGGGACAAACGTTGCTGCGGTAAACCAGGCGATACTCACAGGAAGCGATTTTTCTATTTGATCATATTTTTACAAACAACGGTCGCCTTTTTCGCACAGCAGTTTCGTGCGATGTAAATTATCTAGTTGAGGGACAAATTATACTACTCTAGACGATGCAATAAATTAGTGAT] consensusID : consensus_7139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGGGTGATAGTGTTCGGAAGCGGAAACACTGCGGGTTTCGTTTTAGTGCTTTCCAATAAGTATCACTGGCTCCCGACAGGGCTCAGGCGTTTTCGGTAGAGAATGTTTGCTTTCTCTTCTACGAAGAGGGTAGCACTGGTTTTGTGCCGTAGTTTGTTTTCATCTCTTGCGTGTTGCTTTTTAACTAGTAAAGCGACGTTTTAACGACCTCTTCAAGTGCCCGATACACAAACACATACACACACCAGCGTATAGTGGAATGTGCTTTTATGCTGTGTTTTAACCAAAAGCCAACAGAACAAGTGGAAAGGGGAAAAGATCGCGATCGTTCCTGTCAGTTGACCATGTACATTAAATCTGGCCACCGTTTTCTCAGCGATAAAGGTCAAATCATTTTCCCCGGACCACCGACCCGTTCGCCTGCGCTGTACTATCAGACGAGCACCGTGCCCGCGACCACAACCAGCACGACGACCACGATGGCTACCCCGCCCGGAGGTGTTAGTGATGAGAATGGAAACTACATAGTACCCGACATGTGGCAGAGCAAATCGACTACCGGATCGGACATGCTGTCGGATAAGATACAGATGTTCTACATCTACATCACCGTCACGATTACGTCCGTCTTCATTATAGTTGTGCTCGGGATTTTCGGCTACATGTGCTACAAGAGGAAAGGATTCCAAA] [+] EMBL BM631193 [CCGGGTGATAGTGTTCGGAAGCGGAAACACTGCGGGTTTCGTTTTAGTGCTTTCCAATAAGTATCACTGGCTCCCGACAGGGCTCAGGCGTTTTCGGTAGAGAATGTTTGCTTTCTCTTCTACGAAGAGGGTAGCACTGGTTTTGTGCCGTAGTTTGTTTTCATCTCTTGCGTGTTGCTTTTTAACTAGTAAAGCGACGTTTTAACGACCTCTTCAAGTGCCCGATACACAAACACATACACACACCAGCGTATAGTGGAATGTGCTTTTATGCTGTGTTTTAACCAAAAGCCAACAGAACAAGTGGAAAGGGGAAAAGATCGCGATCGTTCCTGTCAGTTGACCATGTACATTAAATCTGGCCACCGTTTTCTCAGCGATAAAGGTCAAATCATTTTCCCCGGACCACCGACCCGTTCGCCTGCGCTGTACTATCAGACGAGCACCGTGCCCGCGACCACAACCAGCACGACGACCACGATGGCTACCCCGCCCGGAGGTGTTAGTGATGAGAATGGAAACTACATAGTACCCGACATGTGGCAGAGCAAATCGACTACCGGATCGGACATGCTGTCGGATAAGATACAGATGTTCTACATCTACATCACCGTCACGATTACGTCCGTCTTCATTATAGTTGTGCTCGGGATTTTCGGCTACATGTGCTACAAGAGGAAAGGATTCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7139#0 ----------------------------------------------GTGCTTTCCAATAA 14 consensus_7139#1 CCGGGTGATAGTGTTCGGAAGCGGAAACACTGCGGGTTTCGTTTTAGTGCTTTCCAATAA 60 ************** consensus_7139#0 GTGTCACTGGCTCCCGACAGGGCTCAGGCGTTTTCGGTAGAGAATGTTTGCTATCTCTTC 74 consensus_7139#1 GTATCACTGGCTCCCGACAGGGCTCAGGCGTTTTCGGTAGAGAATGTTTGCTTTCTCTTC 120 ** ************************************************* ******* consensus_7139#0 TACGAAGAGGGTAGCACTGGTTTTGTGCCGTAGTTTGTGCTTCTTTTGTTTTCATCTCTT 134 consensus_7139#1 TACGAAGAGGGTAGCACTGGTTTTGTGCCGTAGTT-----------TGTTTTCATCTCTT 169 *********************************** ************** consensus_7139#0 GAATGTTGCTTTTTAACTAGTAAAGCAACGTTTTAACGACCTTTTTAAGTGCCCGATATA 194 consensus_7139#1 GCGTGTTGCTTTTTAACTAGTAAAGCGACGTTTTAACGACCTCTTCAAGTGCCCGATACA 229 * *********************** *************** ** ************ * consensus_7139#0 CA----CTCACACACACCAGCGTATAGTGGAATGTGCTTGTATGCTGTGTTTTAACCAAA 250 consensus_7139#1 CAAACACATACACACACCAGCGTATAGTGGAATGTGCTTTTATGCTGTGTTTTAACCAAA 289 ** * ****************************** ******************** consensus_7139#0 AGCCAACAGAACAAGTGGAAAGGGGAAAAGATCGCGATCGTTCCTGCCTGTTGACCATGT 310 consensus_7139#1 AGCCAACAGAACAAGTGGAAAGGGGAAAAGATCGCGATCGTTCCTGTCAGTTGACCATGT 349 ********************************************** * *********** consensus_7139#0 ACATTAAATCTGGCCACCGTTTTCTCAGCGATAAAGGTCAAATCATTTTCCCCGGACCAC 370 consensus_7139#1 ACATTAAATCTGGCCACCGTTTTCTCAGCGATAAAGGTCAAATCATTTTCCCCGGACCAC 409 ************************************************************ consensus_7139#0 CGACCCGTTCGCCTGCGCTGTACTATCAGACGAGCACCGTGCCCGCGACCACAACCACCA 430 consensus_7139#1 CGACCCGTTCGCCTGCGCTGTACTATCAGACGAGCACCGTGCCCGCGACCACAACCAGCA 469 ********************************************************* ** consensus_7139#0 CGACGACCACGATGGCTACCCCACCCGGCGGTGTTAGTGATGAGAATGGGAACTACATAG 490 consensus_7139#1 CGACGACCACGATGGCTACCCCGCCCGGAGGTGTTAGTGATGAGAATGGAAACTACATAG 529 ********************** ***** ******************** ********** consensus_7139#0 TGCCCGACATGTGGCAGAGCAAATCGACTACCGGATCGGACATGCTGTCGGATAAGATAC 550 consensus_7139#1 TACCCGACATGTGGCAGAGCAAATCGACTACCGGATCGGACATGCTGTCGGATAAGATAC 589 * ********************************************************** consensus_7139#0 AGATGTTCTACATCTACATCACCGTCACGATTACGTCCGTCTTCATTATAGTTGTGCTCG 610 consensus_7139#1 AGATGTTCTACATCTACATCACCGTCACGATTACGTCCGTCTTCATTATAGTTGTGCTCG 649 ************************************************************ consensus_7139#0 GGATTTTCGGCTACATGTGCTACAAAAGGAAAGGATTCCAAAACATCGATGGCCCACAGT 670 consensus_7139#1 GGATTTTCGGCTACATGTGCTACAAGAGGAAAGGATTCCAAA------------------ 691 ************************* **************** consensus_7139#0 CGCCCATCGAAACTACGCGGCGAAGAAGCAGCACCCACCGATCCACTCGAANGTACTCGC 730 consensus_7139#1 ------------------------------------------------------------ consensus_7139#0 GTAACATGTCCAAGGAGANGGAAGCCGCCGCTTCCGCTACTACCACCGANGACAACCCGG 790 consensus_7139#1 ------------------------------------------------------------ consensus_7139#0 GACAAACGTTGCTGCGGTAAACCAGGCGATACTCACAGGAAGCGATTTTTCTATTTGATC 850 consensus_7139#1 ------------------------------------------------------------ consensus_7139#0 ATATTTTTACAAACAACGGTCGCCTTTTTCGCACAGCAGTTTCGTGCGATGTAAATTATC 910 consensus_7139#1 ------------------------------------------------------------ consensus_7139#0 TAGTTGAGGGACAAATTATACTACTCTAGACGATGCAATAAATTAGTGAT 960 consensus_7139#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||