These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1299 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGCGCGCGCGCACATTGACATTGTTTACTGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTCACACATACATTTAAAATCAACAAGTAAAGGGCATTTTCCCTTGCGGGCGACCCGGGAGGGTGTGCTTAATCAAAGACGGAAACTTAAACGTACCAGAGCGGCAGGCTGGTAGAGGTTAGTGCGTTAGTGTCAACAGGAGATTTATAATGGAAAGCAAGTAACGAAAGGAAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACACAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGCGAACGCGAATGCGCAACGGGCAGAGCCGAACTGTAGGATATAGAGGAATCACAACATGCTCACTTACCTTAGCGAATAAAGAAAGTATCAAACTTAGTGGTTACAATCAAATGCAAAAAAAAAAAAAATAACAACACACACACACACAATAGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTG-AAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCAAGTAGCGTAGTAAAAGAGA---A-AGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTT-TCCAAAACCGGGCAAGATCGAAAA--ACACACACAATGCCGCACTCTCACTAAAGGGCC-------AAATAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACATGGGCCCCCACTGTAGGCAAATGGGGGGAACACGCGTGGACGACTGGAATGAATGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTTGCTCCAAACTGTTTTGCAATGCATCGGGCAAGAGAGCGAGGCACGGCTCTGGTGTAAAGAGATGACACAAAAACACACAGCACACACATGAACCCCCCCTC] [+] EMBL BM639427 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCGCGCGCGCGCACATTGACATTGTTTACTGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTCACACATACATTTAAAATCAACAAGTAAAGGGCATTTTCCCTTGCGGGCGACCCGGGAGGGTGTGCTTAATCAAAGACGGAAACTTAAACGTACCAGAGCGGCAGGCTGGTAGAGGTTAGTGCGTTAGTGTCAACAGGAGATTTATAATGGAAAGCAAGTAACGAAAGGAAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACACAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGC ] [+] EMBL BM628072 [ ccgGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTCACACATACATTTAAAATCAACAAGTAAAGGGCATTTTCCCTTGCGGGCGACCCGGGAGGGTGTGCTTAATCAAAGACGGAAACTTAAACGTACCAGAGCGGCAGGCTGGTAGAGGTTAGTGCGTTAGTGTCAACAGGAGATTTATAATGGAAAGCAAGTAACGAAATGAAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACACAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGCGAACGCGAATGCGCAACGGGCAGAGCCGAACTGTAGGATATAGAGGAATCACAACA ] [+] EMBL BM591343 [ ccgCGAAAGGAAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACACAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGCGAACGCGAATGCGCAACGGGCAGAGCCGAACTGTAGGAAATAGAGGAATCACAACATGCTCACTTACCTTAGCGAATAAAGAAAGTATCAAACTTAGTGGTTACAATCAAATGCAAAAAAAAAAAAAATAACAACACACACACACACAATAGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTG AAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCAAGTAGCGTAGTAAAAGAGA A AGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTT TCCAAAACCGGGCAAGATCGAAAA ACACACACAATGCCGCACTCTCACTAAAGGGCC AAATAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACATGGGCCCCCACTGTAGGCAAATGGGGGG ] [+] EMBL BM635244 [ ccgGAGGAATCACAACATGCTCACTTACCTTAGCGAATAAAGAAAGTATCAAACTTAGTGGTTACAATCAAATGCAAAAAAAAAAAAAATAACA ACACACACACACAATAGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTGAAAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCTAGTAGCGTAGTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTTACCCAAAACCGGGCAAGATCGAAAAACACACACACAATGCCGCACTCTCACTAAAGGGCCAAAAACAAAAAAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACAT GGCCCCCACTGTAGGCAAATGGGGGAAACACGCGTGGACGACTGGAATGAATGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTTGCTCCAAACTGTTTTGCAATGCATCGGGCAAGAGAGCGAGGCACGGCTCTGGTGTAAAGAGATGACACAAAAACACACAGCACACACATGAACCCCCCCTC] consensusID : consensus_7140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTGAAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCAAGTAGCGTAGTAAAAGAGAAAGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTTTCCAAAACCGGGCAAGATCGAAAAACACACACAATGCCGCACTCTCACTAAAGGGCCAAATAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACATGGCCCCCACTGTAGGCAAATGGGGGGAAACACGCGTGGACGACTGGAATGAAGCAAACGATGATGCTATATAGCTAGGGAGATGCGTTTAAGAGGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTTGCTCCAAACTGTTTGGCAATGCATCGGGCAAGAGAGCGAGGCACGGCTCTGGTGTAAAGAGATGACACAAAAACACACAGCACACACATGAACCCCCCCTCGTAATGGTTTGCGGGCATCGTTGC] [+] EMBL BM651000 [CCGGTACATTCAATGTGGGAAGATAACACAACAACAAAAAGAAGTGAAAAAAAACAAAAAAAAAATCTGAAACAAATTCAACCTGGCGAATACGTATGTGTGTGCGCGTGTACCAAGGGTCTGCAGGGCAAGTAGCGTAGTAAAAGAGAAAGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGAATATCTAGGAAAAATCGTTTCCAAAACCGGGCAAGATCGAAAAACACACACAATGCCGCACTCTCACTAAAGGGCCAAATAAAAACTGGTTAAGGCAGAGCAACTAGAGCAAGACTTAAGGAAAAACAAGTACCGCGAAGCGAGAAGAAACCCCCTCACATGGCCCCCACTGTAGGCAAATGGGGGGAAACACGCGTGGACGACTGGAATGAAGCAAACGATGATGCTATATAGCTAGGGAGATGCGTTTAAGAGGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTTGCTCCAAACTGTTTGGCAATGCATCGGGCAAGAGAGCGAGGCACGGCTCTGGTGTAAAGAGATGACACAAAAACACACAGCACACACATGAACCCCCCCTCGTAATGGTTTGCGGGCATCGTTGC] consensusID : consensus_7140#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CCGGTGCGAGCGTTTGATCGTTCCCCCCCCCCGCATACAGTGAACTTAATCTAGGCACGGGAAAATTACCTGTAAATTGAAGGAAACAAAAAAAATCTATTCATAGGGAAGGTGAAAAGAATGTTTTTTTTTAGCCCGATTCATTTTCTTCTTAACGCAAAATCATGTTTCACGATCTCAACTCTATTCGTTAGGGGACATTTTTTTAAATATTTTTTTTCTGCAGAAAGCGGTGTCATCTGCATCGCATTTCGGCATTGCTCATTCGTTGTTGGAGGGCGAGAGAGGGGTTGGGGTGGGCGAGTGTCCACTGTATTTGCGTTTTCCCGCTAGCCAAACGTGCAAACTGTAGAAACGCAAACACACACACACGCGCGCGCGCGCACATTGACATTGTTTACTGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA] [+] EMBL BM597040 [CCGGTGCGAGCGTTTGATCGTTCCCCCCCCCCGCATACAGTGAACTTAATCTAGGCACGGGAAAATTACCTGTAAATTGAAGGAAACAAAAAAAATCTATTCATAGGGAAGGTGAAAAGAATGTTTTTTTTTAGCCCGATTCATTTTCTTCTTAACGCAAAATCATGTTTCACGATCTCAACTCTATTCGTTAGGGGACATTTTTTTAAATATTTTTTTTCTGCAGAAAGCGGTGTCATCTGCATCGCATTTCGGCATTGCTCATTCGTTGTTGGAGGGCGAGAGAGGGGTTGGGGTGGGCGAGTGTCCACTGTATTTGCGTTTTCCCGCTAGCCAAACGTGCAAACTGTAGAAACGCAAACACACACACACGCGCGCGCGCGCACATTGACATTGTTTACTGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAACAACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTTTCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7140#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGCGCGCGCGCGCACATTGACATTGTTTACTGT 60 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 ACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGAAAATAAATAAGTAAAAGAAAACAAC 120 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 AACCAAATTACCACGACGCGCGTCAGCAGGCAAAAGCGCGAAATGCAACATAATCACGTT 180 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 TCACACCCACACTCACACACACACTCACACACACACACACACACACACACACACACACAC 240 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC 300 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 ACACACACACTCACACATACATTTAAAATCAACAAGTAAAGGGCATTTTCCCTTGCGGGC 360 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 GACCCGGGAGGGTGTGCTTAATCAAAGACGGAAACTTAAACGTACCAGAGCGGCAGGCTG 420 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 GTAGAGGTTAGTGCGTTAGTGTCAACAGGAGATTTATAATGGAAAGCAAGTAACGAAAGG 480 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 AAAATCCACACCACAGCACAGCCTATTAACTATTGCGCGTAATCTTTTCTCAAAACAACA 540 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 CAACAACAACAACAACAAAAAAACAAAAACAAAAACCTAAGCAAAAGAGGCGAACGCGAA 600 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 TGCGCAACGGGCAGAGCCGAACTGTAGGATATAGAGGAATCACAACATGCTCACTTACCT 660 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 TAGCGAATAAAGAAAGTATCAAACTTAGTGGTTACAATCAAATGCAAAAAAAAAAAAAAT 720 consensus_7140#1 ------------------------------------------------------------ consensus_7140#2 ------------------------------------------------------------ consensus_7140#0 AACAACACACACACACACAATAGTACATTCAATGTGGGAAGATAACACAACA-ACAAAAA 779 consensus_7140#1 -------------------CCGGTACATTCAATGTGGGAAGATAACACAACA-ACAAAAA 40 consensus_7140#2 -------------------CCGGTGCGAGCGTTTGATCGTTCCCCCCCCCCGCATACAGT 41 ** * * * * * * * * * consensus_7140#0 GAAGTGAAAAAAAACAAAAAAAAA--ATCTGAAA--CAAATTCAACCTGGCGAATACGTA 835 consensus_7140#1 GAAGTGAAAAAAAACAAAAAAAAA--ATCTGAAA--CAAATTCAACCTGGCGAATACGTA 96 consensus_7140#2 GAACTTAATCTAGGCACGGGAAAATTACCTGTAAATTGAAGGAAACAAAAAAAATCTATT 101 *** * ** * ** **** * *** ** ** *** *** * consensus_7140#0 TGTGTGTGCGCGTGTACCAAGGGTCTGC----AGGGCAAGTAGCGTAGTAA--AAGAGAA 889 consensus_7140#1 TGTGTGTGCGCGTGTACCAAGGGTCTGC----AGGGCAAGTAGCGTAGTAA--AAGAGAA 150 consensus_7140#2 CATAGG-GAAGGTGAAAAGAATGTTTTTTTTTAGCCCGATTCATTTTCTTCTTAACGCAA 160 * * * *** * * ** * ** * * * * * ** ** consensus_7140#0 AGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGA-ATATCTAGGAAAAATCGTTTC 948 consensus_7140#1 AGAGAGAGAGAGAGAAAGAAGCAGGACACACGGAAGGA-ATATCTAGGAAAAATCGTTTC 209 consensus_7140#2 AATCATGTTTCACGATCTCAACTCTATTCGTTAGGGGACATTTTTTTAAATATTTTTTTT 220 * * ** * * * * *** ** * * ** * * *** consensus_7140#0 CAAAACCGGGCAAGATCGA--AAAACACAC----ACAATGCCGCACTCTCACTAAAGGGC 1002 consensus_7140#1 CAAAACCGGGCAAGATCGA--AAAACACAC----ACAATGCCGCACTCTCACTAAAGGGC 263 consensus_7140#2 CTGCAGAAAGCGGTGTCATCTGCATCGCATTTCGGCATTGCTCATTCGTTGTTGGAGGGC 280 * * ** ** * * ** ** *** * * ***** consensus_7140#0 CAAATAAAAACTGGTTAAGGCAGAG--CAACTAGAGCAAGACTTAAGGAAAAACAAGTAC 1060 consensus_7140#1 CAAATAAAAACTGGTTAAGGCAGAG--CAACTAGAGCAAGACTTAAGGAAAAACAAGTAC 321 consensus_7140#2 GAGAGAGGGGTTGGGGTGGGCGAGTGTCCACTGTATTTGCGTTTTCCCGCTAGCCAAACG 340 * * * *** *** * *** * ** * * * consensus_7140#0 CGCGAAGCGAGAAGAAACCCCCTCACATGGGCCCCCACTGTAGGCAAATGGGGGGAA-CA 1119 consensus_7140#1 CGCGAAGCGAGAAGAAACCCCCTCACATGG-CCCCCACTGTAGGCAAATGGGGGGAAACA 380 consensus_7140#2 TGCAAACTGTAGAAACGCAAACACACACACACGCGCGC-GCGCGCACATTGACATTG-TT 398 ** ** * * * * * **** * * * * * *** ** * consensus_7140#0 CGCGTGGACGACTGGAATGAAT-------------------------------------- 1141 consensus_7140#1 CGCGTGGACGACTGGAATGAAGCAAACGATGATGCTATATAGCTAGGGAGATGCGTTTAA 440 consensus_7140#2 TAC-TGTACCATAGGCACGTGGCGGTTTAGGGGCGAAAGTGA--AAATAAATAAGTAAAA 455 * ** ** * ** * * consensus_7140#0 ---GACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTT 1198 consensus_7140#1 GAGGACGTTGCCGATGTTGGGGTAACGGGCCGGCACCGATCAGTAAGCCACTGCGCTTTT 500 consensus_7140#2 GAAAACAACAACCAAATTACCACGACGCGC-GTCAGCAGGCAAAAGCGCGAAATGCAACA 514 ** * * ** *** ** * ** * ** * * ** consensus_7140#0 GCTCCAAACTGTTTTGCAATGCATCGGGCAAGAGAGCGAGGCACG-GCTCTGGTGTAAAG 1257 consensus_7140#1 GCTCCAAACTGTTTGGCAATGCATCGGGCAAGAGAGCGAGGCACG-GCTCTGGTGTAAAG 559 consensus_7140#2 TAATCACGTTTCACACCCACAC-TCACACAC-ACACTCACACACACACACACACACACAC 572 ** * * * * ** ** * * * *** * * * * consensus_7140#0 AGATG-ACACAAAAACACACA-GCACACACATGAACCCCCCCTC---------------- 1299 consensus_7140#1 AGATG-ACACAAAAACACACA-GCACACACATGAACCCCCCCTCGTAATGGTTTGCGGGC 617 consensus_7140#2 ACACACACACACACACACACACACACACACACACACACACACACACA------------- 619 * * ***** * ******* ******** ** * * * * consensus_7140#0 -------- consensus_7140#1 ATCGTTGC 625 consensus_7140#2 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||