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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1508 fasta sequence
[CCGGTTTCGTATCCGTCAACGCACCGGTAAGATCGGCCGGCCTGAGAAAGGGCACGTAAGGTTTCCTTCCCTCTATATTTCCCCGTTTTCATTCGTCGCCTGCACGCTTAGTCATCGCTGCCCAAGCGGGCACCGTAATAGGATCCCGCCGTCTACCGACCGTTCCCGTTTTCGTAACCCGACGAGAGGAGCTACCTGAAGCAAAAAAAGAGGGGGAGAGGGCGTGCTGCTTATAATACAGTCACAGTGGCGAAAAGTAAAAGCAAGGAAAAGAAAAGGGAGCGAGAGCAAAGCCGAAAGCAAACACCACCACCGAGCCCGAAAAAACATGGCTAAGCAAATCGGCACCGGACGGGCTGGAGGAGAAGACCGACTGATAACGCATTATACTCACCATCACCGTCGCTGCAGATCGCTCATCAGTAGGGTGGCATTAGTCGTGTTGTGTTTTGCGCTCGCCGCTAATCAATACCAGTCGGGATCGGGGACAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAAGTACCACCACACCGCCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGAT-GGAAGAAGGT-GGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCCGAAGTGATCGACTATCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACATTTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTGGCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCGTGCGCGTGATGATCGTGGGCTACGAGCTGTGCCCGGAGGTAACGCTGGAGGAGCTGGTACGGCAGATGAAGGCGGCCGGAGAGTTTGTGCTGAACTATGCCACCGAAAATGGTGTCCGACACATCTCGATCGCGGGCCATTCGGCTGGTGCTCACCTGATCGCTAGCATGCTGGACCGGCCGTTCATGGATGCGGTTGGCGAGGAGCTTGCCCTGCTCAAGGATGTGTATCTCATCTCGGGCGTTTACAATGTGCAGGAGCTACGCTACACGAAGAGTGTGAACAAGGACAATCTGCTTGGTATCAATGATGCGAATGCGAAATCGCTATCCCCGCTGTACGCTAGCTACGAGCATCTGCGACCGATTGTCGAGCAGCAACAGGGTGGAGCGCTACGGTTTCACGTGTACGTTGCCGAGCATGATAGTGATGTGTTTCGTGAGATGGCCGTTAAGATGAGTGAACTGTTGCGATCTTACGGGATGCGGTGCGATCTGAGCGTGCTGCCCGGGCTCGATCACTTTGATATAGTGGAAAAGCTTGCCTCCGCTGACC]
[+] EMBL BM598699 [CCGGTTTCGTATCCGTCAACGCACCGGTAAGATCGGCCGGCCTGAGAAAGGGCACGTAAGGTTTCCTTCCCTCTATATTTCCCCGTTTTCATTCGTCGCCTGCACGCTTAGTCATCGCTGCCCAAGCGGGCACCGTAATAGGATCCCGCCGTCTACCGACCGTTCCCGTTTTCGTAACCCGACGAGAGGAGCTACCTGAAGCAAAAAAAGAGGGGGAGAGGGCGTGCTGCTTATAATACAGTCACAGTGGCGAAAAGTAAAAGCAAGGAAAAGAAAAGGGAGCGAGAGCAAAGCCGAAAGCAAACACCACCACCGAGCCCGAAAAAACATGGCTAAGCAAATCGGCACCGGACGGGCTGGAGGAGAAGACCGACTGATAACGCATTATACTCACCATCACCGTCGCTGCAGATCGCTCATCAGTAGGGTGGCATTAGTCGTGTTGTGTTTTGCGCTCGCCGCTAATCAATACCAGTCGGGATCGGGGACAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAAGTACGACCACACCGCCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGATGGGAAGAAGGTGGGACCACC ]
[+] EMBL BM584234 [ ccgGCTGCCGAAGCGGGAACCGTAATAGGATCCCGCCGTCTACCGACCGTTCCTGTGTTCGTAACCCGACGAAAGGAGCTACCTGAGGAAACACGCAACGGGGAGAGGGCGTGCTGCTTATAATACAGTCACAGTGGCGAAAAGCAAAAGCAAGGAAAAGAAAAGGGAGCGAGAGCAAAGCCGAAAGCAAACACCGCCACCGAGCCCGAAAAAACATGGCTAAGCAAATCGGCATCGGACGGGCTGGAGGAGAAGACGGACTGATAACGCATCATATTCAACATCACCGTCGCTGCAGATCGCTCATCAGTACGGCGGTATTAGTCG TGTGTTTTGCGCTCGCCGCTAATCAATACCAGTCGGGATCGGGGACAGT T GT AGCAGCAGCAGCAGCAGCAAGTACCACCACACCGCCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTAAAATTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGAT GGAAGAAGGC GGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCCGAAGTGATCGACTTTCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGG ]
[+] EMBL BX606374 [ ATCGGGGACAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAAGTACCACCACACCGCCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGAT GGAAGAAGGT GGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCCGAAGTGATCGACTATCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACATTTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTGGCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCG ]
[+] EMBL BX628773 [ CCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGAT GGAAGAAGGT GGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCCGAAGTGATCGACTATCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACATTTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTGGCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCGTGCGCGTGATGATCGTGGGCTACGAGCTGTGCCCGGAGGTAACGCTGGAGGAGCTGGTACGGCAGATGAAGGCGGCCGGAGAGTTTGTGCTGAACTATGCCACCGAAAATGGTGTCCGACACATCTCGATCGCGGGCCATTCGGCTGGTGCTCACCTGATCGCTAGCATGCTGGACCGGCCGTTCATGGAT ]
[+] EMBL BX624565 [ GAAGTGATCGACTATCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACATTTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTGGCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCGTGCGCGTGATGATCGTGGGCTACGAGCTGTGCCCGGAGGTAACGCTGGAGGAGCTGGTACGGCAGATGAAGGCGGCCGGAGAGTTTGTGCTGAACTATGCCACGGAAAATGGTGTCCGACACATTTCGATCGCGGGCCATTCGGCTGGTGCTCACCTGATCGCTAGCATGCTGGACCGGCCGTTCATGGATGCGGTTGGCGAGGAGCTTGCCCTGCTCAAGGATGTGTATCTCATCTCGGGCGTTTACAATGTGCAGGAGCTACGCTACACGAAGAGTGTGAACAAGGACAATCTGCTTGGTATCAATGATGCGAATGCGAAATCGCTATCCCCGCTGTACGCTAGCTACGAGCATCTGCGACCGATTGTCGAGCAGCAACAGGGTGGAGCGCTACGGTTTCACGTGTACGTTGCCGAGCATGATAGTGATGTGTTTCGTGAGATGGCCGTTAAGATGAGTGAACTGTTGCGATCTTACGGGATGCGGTGCGATCTGAGCGTGCTGCCCGGGCTCGATCACTTTGATATAGTGGAAAAGCTTGCCTCCGCTGACC]
consensusID : consensus_7142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence
[AGATCCCCCGAGGTTAAACGTCCGTACAGTGACCGCTGGCTGGGGAAGTTATTCCGNTACGTACAGGTACGCGGCGTGAAAGACACCGTTAACCTGCCAGTGTAATGATGGAAGAAGGCGGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTNCGCTTTCCAACGCCCGCCGAAGTGATCTGACTATACATAGTGAACGTTTGTNAAAAGTTGAAATGCTGANAAAGAACAGTGCATGCATGCTGGAAACGCCTTGGCTGGGACGATTCCCCCTGGTACCGAGCACGCTGGCAGAATCTGGNGACAAAGGGTCGACAGTTTATACGTGTAGCAGAAATCTTGGCTCCCCGTGATAGCACCTGNGTAGTTATAGTTGTTACGTAGCGACGGTTGGCTANACTAGGCAGTATTGCTAGGAGTAAGTGCAAGACGTCGCCTATACGCG]
[+] EMBL AL933244 [AGATCCCCCGAGGTTAAACGTCCGTACAGTGACCGCTGGCTGGGGAAGTTATTCCGNTACGTACAGGTACGCGGCGTGAAAGACACCGTTAACCTGCCAGTGTAATGATGGAAGAAGGCGGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTNCGCTTTCCAACGCCCGCCGAAGTGATCTGACTATACATAGTGAACGTTTGTNAAAAGTTGAAATGCTGANAAAGAACAGTGCATGCATGCTGGAAACGCCTTGGCTGGGACGATTCCCCCTGGTACCGAGCACGCTGGCAGAATCTGGNGACAAAGGGTCGACAGTTTATACGTGTAGCAGAAATCTTGGCTCCCCGTGATAGCACCTGNGTAGTTATAGTTGTTACGTAGCGACGGTTGGCTANACTAGGCAGTATTGCTAGGAGTAAGTGCAAGACGTCGCCTATACGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7142#0 CCGGTTTCGTATCCGTCAACGCACCGGTAAGATCGGCCGGCCTGAGAAAGGGCACGTAAG 60
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 GTTTCCTTCCCTCTATATTTCCCCGTTTTCATTCGTCGCCTGCACGCTTAGTCATCGCTG 120
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 CCCAAGCGGGCACCGTAATAGGATCCCGCCGTCTACCGACCGTTCCCGTTTTCGTAACCC 180
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 GACGAGAGGAGCTACCTGAAGCAAAAAAAGAGGGGGAGAGGGCGTGCTGCTTATAATACA 240
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 GTCACAGTGGCGAAAAGTAAAAGCAAGGAAAAGAAAAGGGAGCGAGAGCAAAGCCGAAAG 300
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 CAAACACCACCACCGAGCCCGAAAAAACATGGCTAAGCAAATCGGCACCGGACGGGCTGG 360
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 AGGAGAAGACCGACTGATAACGCATTATACTCACCATCACCGTCGCTGCAGATCGCTCAT 420
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 CAGTAGGGTGGCATTAGTCGTGTTGTGTTTTGCGCTCGCCGCTAATCAATACCAGTCGGG 480
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 ATCGGGGACAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAAGTACCACCACACCGCCCGT 540
consensus_7142#1 ------------------------------AGATCCCCCGAG----GTTAAAC-GTCCGT 25
** * * ** * ** * ****
consensus_7142#0 ACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCG-GAAAGA 599
consensus_7142#1 ACA-GTGACC-GCTGGCTGGGGAAGTTATTCCGNTACGTACAGGTACGCGGCGTGAAAGA 83
*** ****** ****************** *** ********* * ******* ******
consensus_7142#0 CACCGTTAACCTGCCAGGG-AATGATGGAAGAAGGTGGACCACCTTCGGAGAGTACGCTG 658
consensus_7142#1 CACCGTTAACCTGCCAGTGTAATGATGGAAGAAGGCGGACCACCTTCGGAGAGTACGCTG 143
***************** * *************** ************************
consensus_7142#0 ATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCC 718
consensus_7142#1 ATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTNCGCTTTCCAACGCCCGCC 203
***************************************** ******************
consensus_7142#0 GAAGTGATC-GACTAT-CAT-GTGAA-GTTTGTAAAAAGTGAAAGCGACAAGAACAGGGA 774
consensus_7142#1 GAAGTGATCTGACTATACATAGTGAACGTTTGTNAAAAGTTGAAATGCTGANAA---AGA 260
********* ****** *** ***** ****** ****** ** * * ** **
consensus_7142#0 GCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACAT 834
consensus_7142#1 ACAG-TGCATGCA-TGCTGGAAACGCCTT--GGCTGGGACGATTCCCCCTGGTACCGAGC 316
*** ** * * ******* ** * *** * * **** * * *
consensus_7142#0 TTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTG 894
consensus_7142#1 ACGCTGGCAGAATCTGGNGACAAAGGGTCGACAGTTTA--TACGTGTAGCAGAAATCTTG 374
* * * ****** * * * * * **** ****** * * **
consensus_7142#0 GCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCGT 954
consensus_7142#1 GC---TCCCCGTGAT---AGCACCTGNGTAGTTATAGTTGTTACGTAGCGACGGTTGGCT 428
** * * * ** * * * * ** * * * **** ** * *
consensus_7142#0 GCGCGTGATGATCGTGGGCTACGAGCTGTGCCCGGAGGTAACGCTGGAGGAGCTGGTACG 1014
consensus_7142#1 ANACTAGGCAGTATT--GCTAGGAGTAAGTGCAAGACGTCGC-CTATACGCG-------- 477
* * * * **** *** * ** ** * ** * * *
consensus_7142#0 GCAGATGAAGGCGGCCGGAGAGTTTGTGCTGAACTATGCCACCGAAAATGGTGTCCGACA 1074
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 CATCTCGATCGCGGGCCATTCGGCTGGTGCTCACCTGATCGCTAGCATGCTGGACCGGCC 1134
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 GTTCATGGATGCGGTTGGCGAGGAGCTTGCCCTGCTCAAGGATGTGTATCTCATCTCGGG 1194
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 CGTTTACAATGTGCAGGAGCTACGCTACACGAAGAGTGTGAACAAGGACAATCTGCTTGG 1254
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 TATCAATGATGCGAATGCGAAATCGCTATCCCCGCTGTACGCTAGCTACGAGCATCTGCG 1314
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 ACCGATTGTCGAGCAGCAACAGGGTGGAGCGCTACGGTTTCACGTGTACGTTGCCGAGCA 1374
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 TGATAGTGATGTGTTTCGTGAGATGGCCGTTAAGATGAGTGAACTGTTGCGATCTTACGG 1434
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 GATGCGGTGCGATCTGAGCGTGCTGCCCGGGCTCGATCACTTTGATATAGTGGAAAAGCT 1494
consensus_7142#1 ------------------------------------------------------------
consensus_7142#0 TGCCTCCGCTGACC 1508
consensus_7142#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||