These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1350 fasta sequence [TTATGCGAGTTAATGTGCAGTGTTGTTGCGATTTAGTTGTTTGTACACACAGTTTTACTTTTGTGTGCTGGTTGATGTTCGCTAAACGATTTGCTTTACAAAAACAAAACACACACACATACACACACACACACAATCGATGGGTCAATTTTTGAAGCGACACAAACATGTACTTGCTTAATGTGAAACCCCCTTGCTCGCTAGTGTTACGCACTTAGTATAGGGTTTAGTTTAGTATAGTTTGAGCGAACGCGCTCCAGAAAATGAAACAGTAAAACGGTACCGACGAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAAGCGGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGATATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTGGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAAGAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGCCTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACACGCGAAGGGCGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACAGAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACACACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGTTACGAAACAGCCTATTGGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAAGAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTGCCATGCCTGTAAAAGTGGAAAAGAAG-AAAAAAAGAAGAAGAGCGGATTGATACGCTTGGAGAGCAAACTCATCCCAAGGGAAAGAAAGGCGAAGAG] [+] EMBL BX626867 [TTATGCGAGTTAATGTGCAGTGTTGTTGCGATTTAGTTGTTTGTACACACAGTTTTACTTTTGTGTGCTGGTTGATGTTCGCTAAACGATTTGCTTTACAAAAACAAAACACACACACATACACACACACACACAATCGATGGGTCAATTTTTGAAGCGACACAAACATGTACTTGCTTAATGTGAAACCCCCTTGCTCGCTAGTGTTACGCACTTAGTATAGGGTTTAGTTTAGTATAGTTTGAGCGAACGCGCTCCAGAAAATGAAACAGTAAAACGGTACCGACGAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAAGCGGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGATATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTGGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACT ] [+] EMBL BX625888 [ ATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAAGAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGCCTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACACGCGAAGGGCGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACAGAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACACACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGTTACGAAACAGCCTATTGGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAAGAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTGCCATGCCTGTAAAAGTGGAAAAGAAG AAAAAAAGAAGAAGAGCGGATTGATACGCTTGGAGAGCAAACTCATCCCAAGGGAAAGAAAGGCGAAGAG] [+] EMBL AL933285 [ ccgaggttaCCAATACAGAAA CCGCCTCACCTG TCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACACACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGTTACGAAACAGCCTATTGGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAAGAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTGCCATGCCTGTAAAAGTGGAAAAG ] [+] EMBL BX618513 [ GTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACACACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGTTACGAAACAGCCTATTGGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAAGAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTGCCATGCCTGTAAAAGTGGAAAAGAAGAAAAAAAAGAAGAAGAGCGGATTGATACGCTTGGAGAGCAAACTCATCCCAAGGGAAAGAAAGGCGAAGA ] consensusID : consensus_7146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [AGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAAGAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGCCTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACACGCGAAGGGCGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACAGAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAAAAAAGACATACTCACACACACACACATATGACGAGTAATGTGACGATTAGTAAACACGCATAGGAAAGCTATTCAAAAAAAGAAAACAAGGCAAGTAACCAACCAAGCAAA] [+] EMBL BX617447 [AGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAAGAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGCCTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACACGCGAAGGGCGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACAGAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAAAAAAGACATACTCACACACACACACATATGACGAGTAATGTGACGATTAGTAAACACGCATAGGAAAGCTATTCAAAAAAAGAAAACAAGGCAAGTAACCAACCAAGCAAA] consensusID : consensus_7146#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [NTACGATTCCATTGATAATAAATGCTTGATGTGTTTTTTGCGCAGCATAGGAAGCAGATTGGTAGGTGTNTGTGTGTGTGTGCGCGCGCCGTGCGAGGAGCGGGTAATGCGCTATCGTAGGAAGGGCGCGCGCTGGCGGGCAAAGCATAGCTTAAGCACAAGAGTACAGCAGTATCTTAACAGTTTTTCAACAGCAAAAAATCGCATTACAGATAGAGGAAAAAAGAGACGGAAACAGTAAAACGGTACCGACGTAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAACGGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGATATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTTGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGGGTGGTGCAGCCGGGACGCAGCTGCGAGAATGATGTTACTCTGCAACAGTAAGANAGAAGGANANAAGATAACCTCGGGGGATTGTGGCGTGAGGCATGGGGG] [-] EMBL AL934905 [NTACGATTCCATTGATAATAAATGCTTGATGTGTTTTTTGCGCAGCATAGGAAGCAGATTGGTAGGTGTNTGTGTGTGTGTGCGCGCGCCGTGCGAGGAGCGGGTAATGCGCTATCGTAGGAAGGGCGCGCGCTGGCGGGCAAAGCATAGCTTAAGCACAAGAGTACAGCAGTATCTTAACAGTTTTTCAACAGCAAAAAATCGCATTACAGATAGAGGAAAAAAGAGACGGAAACAGTAAAACGGTACCGACGTAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAACGGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGATATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTTGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGGGTGGTGCAGCCGGGACGCAGCTGCGAGAATGATGTTACTCTGCAACAGTAAGANAGAAGGANANAAGATAACCTCGGGGGATTGTGGCGTGAGGCATGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7146#0 TTATGCGAGTTAATGTGCAGTGTTGTTGCGATTTAGTTGTTTGTACACACAGTTTTACTT 60 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 TTGTGTGCTGGTTGATGTTCGCTAAACGATTTGCTTTACAAAAACAAAACACACACACAT 120 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 ACACACACACACACAATCGATGGGTCAATTTTTGAAGCGACACAAACATGTACTTGCTTA 180 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 ATGTGAAACCCCCTTGCTCGCTAGTGTTACGCACTTAGTATAGGGTTTAGTTTAGTATAG 240 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 TTTGAGCGAACGCGCTCCAGAAAATGAAACAGTAAAACGGTACCGACGAAACGAAATTGG 300 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 CACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAAGC 360 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 GGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGAT 420 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 ATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTGGTTTTAA 480 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 ACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTT 540 consensus_7146#1 -----------------AGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTT 43 consensus_7146#2 --------------------------------NTACGATTCCATTGATAAT-AAATGCTT 27 *** * * * *** ** ** consensus_7146#0 AAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAA 600 consensus_7146#1 AAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAA 103 consensus_7146#2 GATGTGTTTTTTGCGCAGCATAGGAAGCAGATTGGTAGGTGTNTGTGTGTGTGTGCGCGC 87 * * *** * ** *** ** * * ** ** consensus_7146#0 GAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGC 660 consensus_7146#1 GAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGC 163 consensus_7146#2 GCCGTGCGAGGAGCGGGTAA-TGCGCTATCGTAGGAAGGGCGCGCGCTGGCGGGCAAAGC 146 * ** *** ** * * ** * * * * ** * *** consensus_7146#0 CTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACAC--GCGAAGGG 718 consensus_7146#1 CTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACAC--GCGAAGGG 221 consensus_7146#2 ATA-----GCTTAAGCACAAGAGTACAGCAGTATCTTAACAGTTTTTCAACAGCAAAAAA 201 ** ** * *** * * ** * * * * * *** ** ** ** consensus_7146#0 CGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACA 778 consensus_7146#1 CGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACA 281 consensus_7146#2 TCGCATTACAGATAG-AGGAAAAAAGAGACGGAAACAGTAAAACG-GTACC-----GACG 254 ** * * * ** * ** ** *** *** * * ** ** consensus_7146#0 GAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACA 838 consensus_7146#1 GAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACA 341 consensus_7146#2 TAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGA 314 **** * * * * * * * * * ** *** * * * * consensus_7146#0 TACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCA-- 896 consensus_7146#1 TACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCA-- 399 consensus_7146#2 GGAAAGCGAA-ACGGAATAATGT-AACCGTTCTATT----GCAATTGAAAACCGACCTGT 368 * * ** ** * ** ** * * *** * **** * ** consensus_7146#0 AATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTG 956 consensus_7146#1 AATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTG 459 consensus_7146#2 AAACAATTATGTGGTG-ATATAAACGTAATTATAAATGGAT-ATATTAGGTATAC--ATG 424 ** ** ** *** ** * ** * * * * * ** consensus_7146#0 AATGTATATGTCCCT-TTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGAC 1015 consensus_7146#1 AATGTATATGTCCCT-TTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGAC 518 consensus_7146#2 AGGATATATGTTTTTGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAG 484 * ******* * ********* * ** ** * * ** ** * consensus_7146#0 TGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACA 1075 consensus_7146#1 TGGGCTTAGGGGTACGCTGCATCACAGGAGCATAAAAAAGACAT---------ACTCACA 569 consensus_7146#2 TCAGGCTAAGAATTGTGTGTTTAAGGGTGGTGCAGCCGGGACG----------------- 527 * * ** * * ** * * * * * *** consensus_7146#0 CACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGT-TACGAAACAGCCTATT 1134 consensus_7146#1 CACACACACATATGACGAGT-AATGTGACGATTAGTAAACACG-CATAGGAAAGC-TATT 626 consensus_7146#2 CAGCTGCGAGAATGATGTTACTCTGCAACAGTAAGANAGAAGGANANAAGATAACCTCGG 587 ** * * ** * * * * * * * consensus_7146#0 GGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAA 1194 consensus_7146#1 CAAAAAAAGAAAACAAG-GCAAGTAACCAACCAAGCAAA--------------------- 664 consensus_7146#2 GGGATTGTGGCGTGAGGCATGGGGG----------------------------------- 612 * * * consensus_7146#0 GAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTG 1254 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 CCATGCCTGTAAAAGTGGAAAAGAAGAAAAAAAGAAGAAGAGCGGATTGATACGCTTGGA 1314 consensus_7146#1 ------------------------------------------------------------ consensus_7146#2 ------------------------------------------------------------ consensus_7146#0 GAGCAAACTCATCCCAAGGGAAAGAAAGGCGAAGAG 1350 consensus_7146#1 ------------------------------------ consensus_7146#2 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||