These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 854 fasta sequence [AATNCCCGAGGTTAAT-CTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATGGAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGATGTGGCACTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACTGGCGGTGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTNTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTG-CCGTGTTCGGCGCTGTATCCNGCATCCAAGTTTGCGTNCGTTCGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAGATTGGCCCATCAAAGTTAACGGAGCATTCCATCCCTGGCATGGGTGCAACGACNTGATCAAGGTGGTCAGGAGTCGAAGCTNACGGNACGACTACCAAAAGCTCAGGTGAGGGACATTACGGCAGCATCGNGCATTGCCTTGTCNAGACTCCNGAANTCGNAATCNCATGACAGACCATNAGGCACGAAGCAGAAAGGCGGGCACGCGAAGGTTCGGCATGTGTGCCACCACNCAATCATACATTTTGGATGT] [+] EMBL AL933338 [AATNCCCGAGGTTAAT CTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATGGAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGATGTGGCGCTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGCGCCGAGCTCGTCACGCTGCTCTCCACCAAGGTGACCGGCGGCGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTNTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTG CCGTGTTCGGCGCTGTATCCNGCATCCAAGTTTGCGTNCGTTCGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAGATTGGCCCATCAAAGTTAACGGAGCATTCCATCCCTGGCATGGGTGCAACGACNTGATCAAGGTGGTCAGGAGTCGAAGCTNACGGNACGACTACCAAAAGCTCAGGTGAGGGACATTACGGCAGCATCGNGCATTGCCTTGTCNAGACTCCNGAANTCGNAATCNCATGACAGACCATNAGGCACGAAGCAGAAAGGCGGGCACGCGAAGGTTCGGCATGTGTGCCACCACNCAATCATACATTTTGGATGT] [+] EMBL BM628398 [ CCG GGTTGATCCTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATGGAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGATGTGGCACTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACTGGCGGTGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAA ] [+] EMBL BM620236 [ ccg CTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATGGAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGATGTGGCACTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACTGGCGGTGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCGTGTTCGGCG TGTATCCGGCATCCAAGTTTGCGCTCGTT GGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAA ATT GCCCATCAAAGTT AC GAGCATT CAT CCTGGCA ] consensusID : consensus_7148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [AATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCGTGTATCCGGCATCCAAGTTTGCGCTCGTTGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAATTGCCCATCAAAGTTACGAGCATTCATCCTGGCATGGTGCAGACGGACATGATCAAGGTGTTCGAGTCGAAGCTAGCGGAACGACTACCAAAGCTCCAGGTGACGGACATTACCGCCAGCATCGTGCATTGCCTTGCAACACCTCCCGAAGTTCGTATCGATGAGCTGACCATTATGCCAACCATGCAGTAAAAGGCCGTGGCCGCCAGCAAAAGGTAACCGTTGATTTGTTGTACAACACAAACGCAGAATTCAA] [+] EMBL BX611078 [AATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCGTGTATCCGGCATCCAAGTTTGCGCTCGTTGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAATTGCCCATCAAAGTTACGAGCATTCATCCTGGCATGGTGCAGACGGACATGATCAAGGTGTTCGAGTCGAAGCTAGCGGAACGACTACCAAAGCTCCAGGTGACGGACATTACCGCCAGCATCGTGCATTGCCTTGCAACACCTCCCGAAGTTCGTATCGATGAGCTGACCATTATGCCAACCATGCAGTAAAAGGCCGTGGCCGCCAGCAAAAGGTAACCGTTGATTTGTTGTACAACACAAACGCAGAATTCAA] consensusID : consensus_7148#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [GGCATCGGACAGGATGTGGCGCTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACCGGCGGCGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCGTGTATCCGGCATCCAAGTTTGCGCTCGTTGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAATTGCCCATCAAAGTTACGGTAAGATTGGTTAGCGGCTGTGCACA] [+] EMBL BX608789 [GGCATCGGACAGGATGTGGCGCTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACCGGCGGCGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCGTGTATCCGGCATCCAAGTTTGCGCTCGTTGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAATTGCCCATCAAAGTTACGGTAAGATTGGTTAGCGGCTGTGCACA] consensusID : consensus_7148#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [GAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCCCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCGTAAGTGTGGAAAGGATAGTACACGAAAAAAAAAAAAAATAGAAAAACTCCATTGGTTCGTTACAATTCCAGAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCGTGCGG] [-] EMBL BM605829 [GAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCCCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCGTAAGTGTGGAAAGGATAGTACACGAAAAAAAAAAAAAATAGAAAAACTCCATTGGTTCGTTACAATTCCAGAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCGTGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7148#0 AATNCCCGAGGTTAATCTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATG 60 consensus_7148#2 ------------------------------------------------------------ consensus_7148#3 ------------------------------------------------------------ consensus_7148#1 ------------------------------------------------------------ consensus_7148#0 GAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGAT 120 consensus_7148#2 ---------------------------------------------GGCATCGGACAGGAT 15 consensus_7148#3 ------------------------------------------------------------ consensus_7148#1 ------------------------------------------------------------ consensus_7148#0 GTGGCACTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAG 180 consensus_7148#2 GTGGCGCTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAG 75 consensus_7148#3 -----------------------------------------------GAGCAACGAGGGA 13 consensus_7148#1 ------------------------------------------------------------ consensus_7148#0 CTCGTCACGCTACTCTCCACCAAGGTGACTGGCGGTGGTAAGATTTACGCCAAAAAGTGT 240 consensus_7148#2 CTCGTCACGCTACTCTCCACCAAGGTGACCGGCGGCGGTAAGATTTACGCCAAAAAGTGT 135 consensus_7148#3 GAAATAATGGAAACGCTCAACTGGATCCCCCGCG------AGTTCGGTGGCGTTGA-TGT 66 consensus_7148#1 ------------------------------------------------------------ consensus_7148#0 GATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGT 300 consensus_7148#2 GATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGT 195 consensus_7148#3 GCT--GATCAATAATGCAGGCAT--TTATCGCTATCAATTT-ATCACGCGTAAGTGTGGA 121 consensus_7148#1 --------------------AATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGT 40 ** * * **** * *** ** *** ** consensus_7148#0 GGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGC----- 355 consensus_7148#2 GGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGC----- 250 consensus_7148#3 AAGGATAGTACACGAAAAAAAAAAAAAATAGAAAAACTCCATTGGTTCGTTACAATTCCA 181 consensus_7148#1 GGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGC----- 95 * * * * * ** ** * * * * ** ** * ** consensus_7148#0 -AGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATT 414 consensus_7148#2 -AGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATT 309 consensus_7148#3 GAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATT 241 consensus_7148#1 -AGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATT 154 *********************************************************** consensus_7148#0 NTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTG 474 consensus_7148#2 TTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTG 369 consensus_7148#3 TTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTG 301 consensus_7148#1 TTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTG 214 ****************************** **************************** consensus_7148#0 CTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCC-GTGTTCGGCGCTGTA 533 consensus_7148#2 CTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCG-TGTA 428 consensus_7148#3 CTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCC--CGTGCGG------- 352 consensus_7148#1 CTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCG-TGTA 273 ******************************************** ** *** consensus_7148#0 TCCNGCATCCAAGTTTGCGTNCGTTCGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACT 593 consensus_7148#2 TCCGGCATCCAAGTTTGCGCTCGTT-GGGATGACGGAAGTGTTGCGGCAAGAGTTAAACT 487 consensus_7148#3 ------------------------------------------------------------ consensus_7148#1 TCCGGCATCCAAGTTTGCGCTCGTT-GGGATGACGGAAGTGTTGCGGCAAGAGTTAAACT 332 consensus_7148#0 TCCTCAAGATTGGCCCATCAAAGTTAACGGAGCATTCCATCCCTGGCATGGGTGCAACGA 653 consensus_7148#2 TCCTCAAATT--GCCCATCAAAGTTA-CGGTAAGATTGGTTAGCGGC-TGTGCACA---- 539 consensus_7148#3 ------------------------------------------------------------ consensus_7148#1 TCCTCAAATT--GCCCATCAAAGTTA---CGAGCATTCATCCTGGCATGGTGCAGACGGA 387 consensus_7148#0 CNTGATCAAGGTGGTCAGGAGTCGAAGCTNACGGNACGACTACCAAAAGCTCAGGTGAGG 713 consensus_7148#2 ------------------------------------------------------------ consensus_7148#3 ------------------------------------------------------------ consensus_7148#1 CATGATCAAGGTGTTC--GAGTCGAAGCTAGCGGAACGACTACCAAAGCTCCAGGTGACG 445 consensus_7148#0 GACATTACGGC-AGCATCGNGCATTGCCTTGTCNAGACTCCNGAANTCGNAATCNCATGA 772 consensus_7148#2 ------------------------------------------------------------ consensus_7148#3 ------------------------------------------------------------ consensus_7148#1 GACATTACCGCCAGCATCGTGCATTGCCTTGCAACACCTCCCGAAGTTCGTATCGATGAG 505 consensus_7148#0 CAGACCATNAGGCACGAAGCAGAAAGGCGGGCACGCGAAGGTTCGGCATGTGTGCCACCA 832 consensus_7148#2 ------------------------------------------------------------ consensus_7148#3 ------------------------------------------------------------ consensus_7148#1 CTGACCATTATGCCAACCATGCAGTAAAAGGCCGTGGCCGCCAGCAAAAGGTAACCGTTG 565 consensus_7148#0 CNCAATCATACATTTTGGATGT--------- 854 consensus_7148#2 ------------------------------- consensus_7148#3 ------------------------------- consensus_7148#1 ATTTGTTGTACAACACAAACGCAGAATTCAA 596 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||