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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1715 fasta sequence
[CCGAAATTATGGCATAAATTGGCGAGTGTTATTGTTCTGTTTTGTGTTGGGCTTTCTGCGTCCTTCGGTCGTTGTTTCGTCCTAGATGTTTCACACCTTTCCATCCTGGGCTGAAAGCTGTTGCTAGCGATGGATGGAAAGCCAGCTCCACCGGCCGGCAGTGGTGGCGAGCTGTTCAGCTTGCCGGCTGGTCCGGCATCTTTGTGTTTCGACAAGAACGAATTCATGAAGAAAACATTCTCCGTCGATGATTTCCTGCACGAGAACCGAAATGCCGGCAGTCTGGAGATCATTCGCGATGACCTGGGCCTCTACCTGAAGGTACTACGGTCGGCGATGATTGAGCTGATCAATCAGGATTACGCCGATTTCGTAGACCTGTCCGCGAATCTTATCGGGCTGGACCAGCAGATCGAGGCCATCGAGGGGCCGCTGCAGAAGCTGCGCACCGAAGTCGACCAGGTGAAAGGTGCCCTCGAAGCGAGCATGAGCGAAATTGCCAGCTGTCTCGAGCAGAAGAAGCTGCTGCGTTCGTACAAAAAATCGCTCCAGAGCTTGGCCAGAGCGCAAGCTTCGCTGCACAAGCTCGAGGACATGCTGCTCGGCGACAGGAAGGACCAGATCGATGCCACCCTGCTGGAGCGAGCGGCACTGGAATCGATTCAGCTACAGTTTAACATCAAGTTCTGTCGCGACTTTCTGGACGACGGCAAGCAGCGTCTCGCGCAGGACCTCTGGAGCGAGCTGCTGGCCCGGCTGAAGGGTTACTTTCTGCGTGCGCTGGGCGAGCAGGAACCGAAGGAGCTGGAACGGTGTCTGCGCATCTACTGCACGCTGGACGAGTGCCGCACGGCGGAGATTGTGTTTCGGGGCGAAATTGTCGCCCCGTTCATGAACCGCGCCATCTCAGAAAGCAGCCTGCAAAACTCGCCCCAGGGGCTGACCGGGATCTACAATCAGATTCTGGACTTTGTCTCGATGCGCATGAAGCAGCTGTGCCAGCTGACGAAGCGCAACGGCAAAGTGAAGGGCTACAACTTTATCGTGAACAGCTTCTGGGCCGAGGTCGAGCGACGCATGGAGACGAACATGTCGTCGATCTTTGCGCCCGGCAATCCGGATGCCTTCTATCAGAAGTACAAGTGTACGCTTGAGTTCCTGGAGCGCATCGAGCTGATCATCGACGATGCGGACG-ACGTGGCGCAGTTCAAGGCGCACGCGCAGTACCGCAGCTTTCAGCTGCGCTGGAACCTGCCGGTGTACTTCCAGATCCGATTCCAGGAGATCGGTGCCGAGCTGGAGGCGTGCTGCAGCGAATCCGCTTCACGCCAGGTGGCCTCCAGCATATCCGCATCCCAGTTTAATGTAGCGCAATTTTCCGCCGCCCTGACGGCCATTTCCCGCTGCTGGCAGGATGGTGTGTTTCTGCCGCAGCTGTTCCATCGGTTCCTTAAGCTCACGCTGCAGATTCTCGCGCGGTTAAGCGTGTGGTGTGGAGAAGCCTTCCGACCGGACGGGGCAAGCCAAGAGACGGCGAACGGCGCTCCGGAGGGGCAGACGGAGCGCATCCGCTTTCTGGTGGCGCTGTACTCTGATCTGCGAAATATCGAGCTGAAAATTCCGTCAATAGTGAACCTGATCGTGGAGAAAAGCCCACCGTCTGGGGTGTCTCGCGGCGAGCTGGAAGCGATAGTGGGCGAGAGCGGGACTGCATT]
[+] EMBL BM610263 [CCGAAATTATGGCATAAATTGGCGAGTGTTATTGTTCTGTTTTGTGTTGGGCTTTCTGCGTCCTTCGGTCGTTGTTTCGTCCTAGATGTTTCACACCTTTCCATCCTGGGCTGAAAGCTGTTGCTAGCGATGGATGGAAAGCCAGCTCCACCGGCCGGCAGTGGTGGCGAGCTGTTCAGCTTGCCGGCTGGTCCGGCATCTTTGTGTTTCGACAAGAACGAATTCATGAAGAAAACATTCTCCGTCGATGATTTCCTGCACGAGAACCGAAATGCCGGCAGTCTGGAGATCATTCGCGATGACCTGGGCCTCTACCTGAAGGTACTACGGTCGGCGATGATTGAGCTGATCAATCAGGATTACGCCGATTTCGTAGACCTGTCCGCGAATCTTATCGGGCTGGACCAGCAGATCGAGGCCATCGAGGGGCCGCTGCAGAAGCTGCGCACCGAAGTCGACCAGGTGAAAGGTGCCCTCGAAGCGAGCATGAGCGAAATTGCCAGCTGTCTCGAGCAGAAGAAGCTGCTGCGTTCGTACAAAAAATCGCTCCAGAGCTTGGCCAGAGCGCAAGCTTCGCTGCACAAGCTCGAGGACATGCTGCTCGGCGATAGGAAGGACCAGATCGATGCCACCCTGCTGGAGCGAGCGGCACTGGAATCGATTCAGCTACAGTTTAACATCAAGTTCTGTCGCGA ]
[+] EMBL BM597995 [ ccgCGAGAACCGAAATGCCGGCAGTCTGGAGATCATTCGCGATGACCTGGGCCTCTACCTGAAGGTACTACGGTCGGCGATGATTGAGCTGATCAATCAGGATTACGCCGATTTCGTAGACCTGTCCGCGAATCTTATCGGGCTGGACCAGCAGATCGAGGCCATCGAGGGGCCGCTGCAGAAGCTGCGCACCGAAGTCGACCAGGTGAAAGGTGCCCTCGAGGCGAGCATGAGCGAAATTGCCAGCTGTCTCGAGCAGAAGAAGCTGCTGCGTTCGTACAAAAAATCGCTCCAGAGCTTGGCCAGAGCGCAAGCTTCGCTGCACAAGCTCGAGGACATGCTGCTCGGCGACAGGAAGGACCAGATCGATGCCACCCTGCTGGAGCGAGCGGCACTGGAATCGATTCAGCTACAGTTTAACATCAAGTTCTGTCGCGACTTTCTGGACGACGGCAAGCAGCGTCTCGCGCAGGACCTCTGGAGCGAGCTGCTGGCCCGGCTGAAGGGTTACTTTCTGCGTGCGCTGG ]
[+] EMBL BM590658 [ ccGCTTCGCTGCACAAGCTCGAGGACATGCTGCTCGGCGACAGGAAGGACCAGATCGATGCCACCCTGCTGGAGCGAGCGGCACTGGAATCGATTCAGCTACAGTTTAACATCAAGTTCTGTCGCGACTTTCTGGACGACGGCAAGCAGCGTCTCGCGCAGGACCTCTGGAGCGAGCTGCTGGCCCGGCTGAAGGGTTACTTTCTGCGTGCGCTGGGCGAGCAGGAACCGAAGGAGCTGGAACGGTGTCTGCGCATCTACTGCACGCTGGACGAGTGCCGCACGGCGGAGATTGTGTTTCGGGGCGAAATTGTCGCCCCGTTCATGAACCGCGCCATCTCAGAAAGCAGCCTGCAAAACTCGCCCCAGGGGCTGACCGGGATCTACAATCAGATTCTGGACTTTGTCTCGATGCGCATGAAGCAGCTGTGCCAGCTGACGAAGCGCAACGGCAAAGTGAAGGGCTACAACTTTATCGTGAACAGCTTCTGGGCCGAGGTCGAGCGACGCATGGAGACGAACATGTCGTCGATCTTTGCGCCCGGCAATCCGGATGCCTTCTATCAGAAGTACAAGTGTACGCTTGAGTTCCTGGAGCGCATCGAGCTGATCATCGACGATGCGGACGAACGTGGCGCAGTTCAAGGCGCACGCGCAGTACCGCAGCTTTCAGCTGCGCTGGA ]
[+] EMBL BM590740 [ ccgcggacgCGTGGGCAGCTTCTGGGCCGAGGTCGAGCGACGCATGGAGACGAACATGTCGTCGATCTTTGCGCCCGGCAATCCGGATGCCTTCTATCAGAAGTACAAGTGTACGCTTGAGTTCCTGGAGCGCATCGAGCTGATCATCGACGATGCGGACG ACGTGGCGCAGTTCAAGGCGCACGCGCAGTACCGCAGCTTTCAGCTGCGCTGGAACCTGCCGGTGTACTTCCAGATCCGATTCCAGGAGATCGGTGCCGAGCTGGAGGCGTGCTGCAGCGAATCCGCTTCACGCCAGGTGGCCTCCAGCATATCCGCATCCCAGTTTAATGTAGCGCAATTTTCCGCCGCCCTGACGGCCATTTCCCGCTGCTGGCAGGATGGTGTGTTTCTGCCGCAGCTGTTCCATCGGTTCCTTAAGCTCACGCTGCAGATTCTCGCGCGGTTAAGCGTGTGGTGTGGAGAAGCCTTCCGACCGGACGGGGCAAGCCAAGAGACGGCGAACGGCGCTCCGGAGGGGCAGACGGAGCGCATCCGCTTTCTGGTGGCGCTGTACTCTGATCTGCGAAATATCGAGCTGAAAATTCCGTCAATAGTGAACCTGATCGTGGAGAAAAGCCCACCGTCTGGGGTGTCTCGCGGCGAGCTGGAAGCGATAGTGGGCGAGAGCGGGACTGCATT]
[+] EMBL BX615382 [ CGGACG ACGTGGCGCAGTTCAAGGCGCACGCGCAGTACCGTAGCTTTCAGCTGCGCTGGAACCTGCCGGTGTACTTCCAGATCCGATTCCAGGAGATCGGTGCCGAGCTGGAGGCGTGCTGCAGCGAATCCGCTTCACGCCAGGTGGCCTCCAGCATATCCGCATCCCAGTTTAATGTAGCGCAATTTTCCGCCGCCCTGACGGCCATTTCCCGCTGCTGGCAGGATGGTGTGTTTCTGCCGCAG ]
consensusID : consensus_7157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence
[CAGAATCGGCACGAGGTGTAATCGACAAGAACGAATTCATGACAGAAAACATTCTCCGGTCGATGAGTTCCTGCACGAGAACCGAAATGCCGGCAGTCTGGAGATCATTCGCGATGACCTGGGCCTCTACCTGAAGGTACTACGGTCGGTGATGATTGAGGCTGATCAATCAGGATTACGCCGATTTCGGTAGACCTGTCCGCGGAATCTTATCGGGCTGGACCAGCAGGATCGAGGCCATCGGAGGTGGCCGCGTGCAGAAGGCTGCTGCACCGAAGGTCGACCAGGTGAAAGGTGCCCTCGAAGCGAGCATGAGCGAAATTTGNCAGCTGTCTCGAGGCAGGAAGAAGCGTGCGTGCCGTTCGTACAAAAAGAGTCGCTCCAGGAGCTTGTGCCAGAGACGCACAGCTTCGNNTGCACAAGCGTCGAGGACATGCTGCTCGGCGGACANGGAAGGACCAGATCGATGCCACCCTGCTGGAGCGAGCGGGACTGGAATCGAGTTCGACGTTACAGTTTAANCATCAAGTTCTGTCGCGACGTTTCTGGACGACAG]
[+] EMBL BX469658 [CAGAATCGGCACGAGGTGTAATCGACAAGAACGAATTCATGACAGAAAACATTCTCCGGTCGATGAGTTCCTGCACGAGAACCGAAATGCCGGCAGTCTGGAGATCATTCGCGATGACCTGGGCCTCTACCTGAAGGTACTACGGTCGGTGATGATTGAGGCTGATCAATCAGGATTACGCCGATTTCGGTAGACCTGTCCGCGGAATCTTATCGGGCTGGACCAGCAGGATCGAGGCCATCGGAGGTGGCCGCGTGCAGAAGGCTGCTGCACCGAAGGTCGACCAGGTGAAAGGTGCCCTCGAAGCGAGCATGAGCGAAATTTGNCAGCTGTCTCGAGGCAGGAAGAAGCGTGCGTGCCGTTCGTACAAAAAGAGTCGCTCCAGGAGCTTGTGCCAGAGACGCACAGCTTCGNNTGCACAAGCGTCGAGGACATGCTGCTCGGCGGACANGGAAGGACCAGATCGATGCCACCCTGCTGGAGCGAGCGGGACTGGAATCGAGTTCGACGTTACAGTTTAANCATCAAGTTCTGTCGCGACGTTTCTGGACGACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7157#0 CCGAAATTATGGCATAAATTGGCGAGTGTTATTGTTCTGTTTTGTGTTGGGCTTTCTGCG 60
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 TCCTTCGGTCGTTGTTTCGTCCTAGATGTTTCACACCTTTCCATCCTGGGCTGAAAGCTG 120
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 TTGCTAGCGATGGATGGAAAGCCAGCTCCACCGGCCGGCAGTGGTGGCGAGCTGTTCAGC 180
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 TTGCCGGCTGGTCCGGCATCTTTGTGTT-TCGACAAGAACGAATTCATGA-AGAAAACAT 238
consensus_7157#1 -------CAGAATCGGCA-CGAGGTGTAATCGACAAGAACGAATTCATGACAGAAAACAT 52
* * ***** * **** ********************* *********
consensus_7157#0 TCTCCG-TCGATGATTTCCTGCACGAGAACCGAAATGCCGGCAGTCTGGAGATCATTCGC 297
consensus_7157#1 TCTCCGGTCGATGAGTTCCTGCACGAGAACCGAAATGCCGGCAGTCTGGAGATCATTCGC 112
****** ******* *********************************************
consensus_7157#0 GATGACCTGGGCCTCTACCTGAAGGTACTACGGTCGGCGATGATTGAG-CTGATCAATCA 356
consensus_7157#1 GATGACCTGGGCCTCTACCTGAAGGTACTACGGTCGGTGATGATTGAGGCTGATCAATCA 172
************************************* ********** ***********
consensus_7157#0 GGATTACGCCGATTTCG-TAGACCTGTCCGCG-AATCTTATCGGGCTGGACCAGCAG-AT 413
consensus_7157#1 GGATTACGCCGATTTCGGTAGACCTGTCCGCGGAATCTTATCGGGCTGGACCAGCAGGAT 232
***************** ************** ************************ **
consensus_7157#0 CGAGGCCATCGAGGG--GCCGC-TGCAGAAG-CTGC-GCACCGAAG-TCGACCAGGTGAA 467
consensus_7157#1 CGAGGCCATCGGAGGTGGCCGCGTGCAGAAGGCTGCTGCACCGAAGGTCGACCAGGTGAA 292
*********** ** ***** ******** **** ********* *************
consensus_7157#0 AGGTGCCCTCGAAGCGAGCATGAGCGAAATT-GCCAGCTGTCTCGAGC--AGAAGAAGC- 523
consensus_7157#1 AGGTGCCCTCGAAGCGAGCATGAGCGAAATTTGNCAGCTGTCTCGAGGCAGGAAGAAGCG 352
******************************* * ************* ********
consensus_7157#0 --TGCTGCGTTCGTACAAAAAA--TCGCTCCAG-AGCTTG-GCCAGAG-CGCA-AGCTTC 575
consensus_7157#1 TGCGTGCCGTTCGTACAAAAAGAGTCGCTCCAGGAGCTTGTGCCAGAGACGCACAGCTTC 412
* ************** ********* ****** ******* **** ******
consensus_7157#0 GCT-GCACAAGC-TCGAGGACATGCTGCTCGGCGAC--AGGAAGGACCAGATCGATGCCA 631
consensus_7157#1 GNNTGCACAAGCGTCGAGGACATGCTGCTCGGCGGACANGGAAGGACCAGATCGATGCCA 472
* ******** ********************* *********************
consensus_7157#0 CCCTGCTGGAGCGAGCGGCACTGGAATCGA-TTCAGC--TACAGTTTAAC-ATCAAGTTC 687
consensus_7157#1 CCCTGCTGGAGCGAGCGGGACTGGAATCGAGTTCGACGTTACAGTTTAANCATCAAGTTC 532
****************** *********** *** * ********** *********
consensus_7157#0 TGTCGCGAC-TTTCTGGACGACGGCAAGCAGCGTCTCGCGCAGGACCTCTGGAGCGAGCT 746
consensus_7157#1 TGTCGCGACGTTTCTGGACGACAG------------------------------------ 556
********* ************ *
consensus_7157#0 GCTGGCCCGGCTGAAGGGTTACTTTCTGCGTGCGCTGGGCGAGCAGGAACCGAAGGAGCT 806
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 GGAACGGTGTCTGCGCATCTACTGCACGCTGGACGAGTGCCGCACGGCGGAGATTGTGTT 866
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 TCGGGGCGAAATTGTCGCCCCGTTCATGAACCGCGCCATCTCAGAAAGCAGCCTGCAAAA 926
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 CTCGCCCCAGGGGCTGACCGGGATCTACAATCAGATTCTGGACTTTGTCTCGATGCGCAT 986
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 GAAGCAGCTGTGCCAGCTGACGAAGCGCAACGGCAAAGTGAAGGGCTACAACTTTATCGT 1046
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 GAACAGCTTCTGGGCCGAGGTCGAGCGACGCATGGAGACGAACATGTCGTCGATCTTTGC 1106
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 GCCCGGCAATCCGGATGCCTTCTATCAGAAGTACAAGTGTACGCTTGAGTTCCTGGAGCG 1166
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 CATCGAGCTGATCATCGACGATGCGGACGACGTGGCGCAGTTCAAGGCGCACGCGCAGTA 1226
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 CCGCAGCTTTCAGCTGCGCTGGAACCTGCCGGTGTACTTCCAGATCCGATTCCAGGAGAT 1286
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 CGGTGCCGAGCTGGAGGCGTGCTGCAGCGAATCCGCTTCACGCCAGGTGGCCTCCAGCAT 1346
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 ATCCGCATCCCAGTTTAATGTAGCGCAATTTTCCGCCGCCCTGACGGCCATTTCCCGCTG 1406
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 CTGGCAGGATGGTGTGTTTCTGCCGCAGCTGTTCCATCGGTTCCTTAAGCTCACGCTGCA 1466
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 GATTCTCGCGCGGTTAAGCGTGTGGTGTGGAGAAGCCTTCCGACCGGACGGGGCAAGCCA 1526
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 AGAGACGGCGAACGGCGCTCCGGAGGGGCAGACGGAGCGCATCCGCTTTCTGGTGGCGCT 1586
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 GTACTCTGATCTGCGAAATATCGAGCTGAAAATTCCGTCAATAGTGAACCTGATCGTGGA 1646
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 GAAAAGCCCACCGTCTGGGGTGTCTCGCGGCGAGCTGGAAGCGATAGTGGGCGAGAGCGG 1706
consensus_7157#1 ------------------------------------------------------------
consensus_7157#0 GACTGCATT 1715
consensus_7157#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||