cluster # 7163

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Anopheles gambiae
cluster # 7163 cluster # 7163 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7163#0 length = 524 sequences # 2

consensus_7163#1 length = 521 sequences # 2
consensus_7163#2 length = 508 sequences # 2

consensusID : consensus_7163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 524
fasta sequence

                              [CCGCGGACGCGTGGGGCCGCAAACCGGACCGGAACATATAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAACTACCATAGAATGATGCATGATGGAGGTTGACGCCATACCGTTTCTGGAAACAATAGAAACAACGCGCCATTAATAGTGGTGTACGAAGAGAATTCAGAATTTGTTTCCATAATTCAGTTGAAAATGTAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTCGGAAAATGTTTCTACTCCCAACCATTTCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTTGGACGAATTTGGTTGTCATTTTCATGGCTTGCCTCTAAACATATAATGATGCGATTTTAAATTAATAAAATAAAGTCTTACTTCTCGACAATTTC]

[+] EMBL BM586710             [CCGCGGACGCGTGGGGCCGCAAACCGGACCGGAACATATAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAACTACCATAGAATGATGCATGATGGAGGTTGACGCCATACCGTTTCTGGAAACAATAGAAACAACGCGCCATTAATAGTGGTGTACGAAGAGAATTCAGAATTTGTTTCCATAATTCAGTTGAAAATGTAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTCGGAAAATGTTTCTACTCCCAACCATTTCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTTGGACGAATTTGGTTGTCATTTTCATGGCTTGCCTCTAAACATAT                                                   ]
[+] EMBL BM617911             [             ccGCCGCAAACCGGACCGGAACATATAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAACTACCATAGAATGATGCATGATGGAGGTTGACGCCATACCGTTTCTGGAAACAATAGAAACAACGCGCCATTAATAGTGGTGTACGAAGAGAATTCAGAATTTGTTTCCATAATTCAGTTGAAAATGTAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTCGGAAAATGTTTCTACTCCCAACCATTTCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTTGGACGAATTTGGTTGTCATTTTCATGGCTTGCCTCTAAACATATAATGATGCGATTTTAAATTAATAAAATAAAGTCTTACTTCTCGACAATTTC]




>consensus_7163#0
CCGCGGACGCGTGGGGCCGCAAACCGGACCGGAACATATAAATGGAACCAAAAATTGATA
AAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCAC
ATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAACTACCATAGAATGAT
GCATGATGGAGGTTGACGCCATACCGTTTCTGGAAACAATAGAAACAACGCGCCATTAAT
AGTGGTGTACGAAGAGAATTCAGAATTTGTTTCCATAATTCAGTTGAAAATGTAGCTGCC
AAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTC
GGAAAATGTTTCTACTCCCAACCATTTCGAAAGGTGATCCGATAACTGTGTTTACGGTTC
AGTCCACTTGGACGAATTTGGTTGTCATTTTCATGGCTTGCCTCTAAACATATAATGATG
CGATTTTAAATTAATAAAATAAAGTCTTACTTCTCGACAATTTC

consensusID : consensus_7163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 521
fasta sequence

                              [CCGGCCGCAAACCGGACCGGAACATAGAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAAGTATCCTGGAATGATACATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTACGAAGATAATTCAGAATTTGTTTCCGTAATTCAGTCGAATATATAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTTGGAAAATGTTTCTACTCCCAACCATTCCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTAGGACGAATTTGGTTGTCATTTTCATGGCTTGCTTCTGAACATGTAATGATGCGAAATTGCATTAATAAAATAAAGGTTCGAAAATAAACGATTTTACAAACGCT]

[+] EMBL BM602343             [CCGGCCGCAAACCGGACCGGAACATAGAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAAGTATCCTGGAATGATACATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTACGAAGATAATTCAGAATTTGTTTCCGTAATTCAGTCGAATATATAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCAT                                                                                                                                                                                          ]
[+] EMBL BM591525             [       ccgACCGGACCGGAACATAGAAATGGAACCAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAAGTATCCTGGAATGATACATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTACGAAGATAATTCAGAATTTGTTTCCGTAATTCAGTCGAATATATAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTTGGAAAATGTTTCTACTCCCAACCATTCCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTAGGACGAATTTGGTTGTCATTTTCATGGCTTGCTTCTGAACATGTAATGATGCGAAATTGCATTAATAAAATAAAGGTTCGAAAATAAACGATTTTACAAACGCT]




>consensus_7163#1
CCGGCCGCAAACCGGACCGGAACATAGAAATGGAACCAAAAATTGATAAAAATCGCGGAA
GTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCACATCTTTTACCTC
ATGACCCGCTCAAGACACTTCCTACCGGCCAAAGTATCCTGGAATGATACATGATGGAGG
TTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTACGA
AGATAATTCAGAATTTGTTTCCGTAATTCAGTCGAATATATAGCTGCCAAGAGCGTTCTT
GTTCAAAACCAATAATTGCAGACAACTTACAGCATAAATCCTTGTTTTGGAAAATGTTTC
TACTCCCAACCATTCCGAAAGGTGATCCGATAACTGTGTTTACGGTTCAGTCCACTAGGA
CGAATTTGGTTGTCATTTTCATGGCTTGCTTCTGAACATGTAATGATGCGAAATTGCATT
AATAAAATAAAGGTTCGAAAATAAACGATTTTACAAACGCT

consensusID : consensus_7163#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 508
fasta sequence

                              [AAAAAGCCGCAAACGGACGGAACATAGAAATGGAACAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCAATTCGCATATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCCAGACACTTCCTACCGACCAAACTACCCTGGAATGATTCATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTAGATAATTCAGATGAAGATAATTCAGAATTTGTTTCCATAATTCAGTC-AAATATAGCCGCCAAGCGCGTTCATAATTAAAACCAAGAATTGCAGAC-ACTTACAGCATAAATCCTTCTCTTGGAAAATGTTTCTACTCCCTACCTTTCCGAAAGATGATCCGATAACGGTGGTTATGGTTCGGTCCACTCGAACGAATTTGGTTGTCTTTCTCATGGCATGCGAGAGGAAGAACATGCGATTTTAAAATAATAAAATAAATGTTACTTCCCCTTT]

[+] EMBL CNS08QNM             [AAAAAGCCGCAAACGGACGGAACATAGAAATGGAACAAAAATTGATAAAAATCGCGGAAGTATTCGGCGACGCAATTCGCATATACTTCCGTAGCGATTATATCACATCTTTTACCTCATGACCCGCTCCAGACACTTCCTACCGACCAAACTACCCTGGAATGATTCATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTAGATAATTCAGATGAAGATAATTCAGAATTTGTTTCCATAATTCAGTC AAATATAGCCGCCAAGCGCGTTCATAATTAAAACCAAGAATTGCAGAC ACTTACAGCATAAAT                                                                                                                                                                   ]
[-] EMBL CNS08QNN             [                                                                                                                                                                                                  TCT GAAACAATGGCCACAACGCGCCATCAATAGAGATGTAGATAATTCAGATGAAGATAATTCAGAATTTGTTTCCATAATTCAGTCAAAATATAGCCCCCAAGCGCGTTCATAATTAAAACCAAGAATTGCAGACAACTTACAGCATAAATCCTTCTCTTGGAAAATGTTTCTACTCCCTACCTTTCCGAAAGATGATCCGATAACGGTGGTTATGGTTCGGTCCACTCGAACGAATTTGGTTGTCTTTCTCATGGCATGCGAGAGGAAGAACATGCGATTTTAAAATAATAAAATAAATGTTACTTCCCCTTT]




>consensus_7163#2
AAAAAGCCGCAAACGGACGGAACATAGAAATGGAACAAAAATTGATAAAAATCGCGGAAG
TATTCGGCGACGCAATTCGCATATACTTCCGTAGCGATTATATCACATCTTTTACCTCAT
GACCCGCTCCAGACACTTCCTACCGACCAAACTACCCTGGAATGATTCATGATGGAGGTT
GACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAATAGAGATGTAGATAA
TTCAGATGAAGATAATTCAGAATTTGTTTCCATAATTCAGTCAAATATAGCCGCCAAGCG
CGTTCATAATTAAAACCAAGAATTGCAGACACTTACAGCATAAATCCTTCTCTTGGAAAA
TGTTTCTACTCCCTACCTTTCCGAAAGATGATCCGATAACGGTGGTTATGGTTCGGTCCA
CTCGAACGAATTTGGTTGTCTTTCTCATGGCATGCGAGAGGAAGAACATGCGATTTTAAA
ATAATAAAATAAATGTTACTTCCCCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7163#0      CCGCGGACGCGTGGGGCCGCAAACCGGACCGGAACATATAAATGGAACCAAAAATTGATA 60
consensus_7163#1      ------------CCGGCCGCAAACCGGACCGGAACATAGAAATGGAACCAAAAATTGATA 48
consensus_7163#2      ----------AAAAAGCCGCAAAC--GGACGGAACATAGAAATGGAAC-AAAAATTGATA 47
                                     *********  *  ********* ********* ***********

consensus_7163#0      AAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCAC 120
consensus_7163#1      AAAATCGCGGAAGTATTCGGCGACGCCAATTCGCACATACTTCCGTAGCGATTATATCAC 108
consensus_7163#2      AAAATCGCGGAAGTATTCGGCGACGC-AATTCGCATATACTTCCGTAGCGATTATATCAC 106
                      ************************** ******** ************************

consensus_7163#0      ATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAACTACCATAGAATGAT 180
consensus_7163#1      ATCTTTTACCTCATGACCCGCTCAAGACACTTCCTACCGGCCAAAGTATCCTGGAATGAT 168
consensus_7163#2      ATCTTTTACCTCATGACCCGCTCCAGACACTTCCTACCGACCAAACTACCCTGGAATGAT 166
                      *********************** *************** ***** ** * * *******

consensus_7163#0      GCATGATGGAGGTTGACGCCATACCGTTTCTGGAAACAATAGAAACAACGCGCCATTAAT 240
consensus_7163#1      ACATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAAT 228
consensus_7163#2      TCATGATGGAGGTTGACGCCATAACGTTTCTGGAAACAATGGCCACAACGCGCCATCAAT 226
                       ********************** **************** *  ************ ***

consensus_7163#0      AGTGGTGTA-----------CGAAGAGAATTCAGAATTTGTTTCCATAATTCAGTTGAAA 289
consensus_7163#1      AGAGATGTA-----------CGAAGATAATTCAGAATTTGTTTCCGTAATTCAGTCGAAT 277
consensus_7163#2      AGAGATGTAGATAATTCAGATGAAGATAATTCAGAATTTGTTTCCATAATTCAGTCAAA- 285
                      ** * ****            ***** ****************** *********  ** 

consensus_7163#0      ATGTAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAA 349
consensus_7163#1      ATATAGCTGCCAAGAGCGTTCTTGTTCAAAACCAATAATTGCAGACAACTTACAGCATAA 337
consensus_7163#2      -TATAGCCGCCAAGCGCGTTCATAATTAAAACCAAGAATTGCAGACA-CTTACAGCATAA 343
                       * **** ****** ****** *  * ******** *********** ************

consensus_7163#0      ATCCTTGTTTCGGAAAATGTTTCTACTCCCAACCATTTCGAAAGGTGATCCGATAACTGT 409
consensus_7163#1      ATCCTTGTTTTGGAAAATGTTTCTACTCCCAACCATTCCGAAAGGTGATCCGATAACTGT 397
consensus_7163#2      ATCCTTCTCTTGGAAAATGTTTCTACTCCCTACCTTTCCGAAAGATGATCCGATAACGGT 403
                      ****** * * ******************* *** ** ****** ************ **

consensus_7163#0      GTTTACGGTTCAGTCCACTTGGACGAATTTGGTTGTCATTTTCATGGCTTGCCTCTAAAC 469
consensus_7163#1      GTTTACGGTTCAGTCCACTAGGACGAATTTGGTTGTCATTTTCATGGCTTGCTTCTGAAC 457
consensus_7163#2      GGTTATGGTTCGGTCCACTCGAACGAATTTGGTTGTCTTTCTCATGGCATGC----GAGA 459
                      * *** ***** ******* * *************** ** ******* ***     *  

consensus_7163#0      ATATAATGATGCGATTTTAAATTAATAAAATAAAGTCTTACTTCTCGACAATTTC----- 524
consensus_7163#1      ATGTAATGATGCGAAATTGCATTAATAAAATAAAGGTTCGAAAATAAACGATTTTACAAA 517
consensus_7163#2      GGAAGAACATGCGATTTTAAAATAATAAAATAAATGTTACTTCCCCTTT----------- 508
                           *  ******  **  * ************   *                      

consensus_7163#0      ----
consensus_7163#1      CGCT 521
consensus_7163#2      ----