These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 777 fasta sequence [CCGGTTTTTGCCGTGATACACTAAGTTTCTTTTTTTACAGTGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGGCTGAAGTGGCTACTCTCATGTTGATACTCATAGAAGAGGAAGACGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATGACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGACCCGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACGATGCTACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGGAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTTTGTACACACATAATAAATGAATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGATAACAGTTCCATACTAATACTCTCCTCTTACTTATAAGATGACCACTTTATCTAAGCTGTTTGTATATATAGTAATTTTAAGTTTGGTTTCGTTTTCTGGTGCTCGTGTTATTATAGTCTTTTTTTCTANAACTAATATATTGCCTAAAAACTGCTGTTATACTATTTAACAAATGAACTTGTTGCAATAAACAACTATTCAGGTCATGTCACTAACGTAACCACAGGGTGAGAATATTTCTTTTG] [+] EMBL BM637283 [CCGGTTTTTGCCGTGATACACTAAGTTTCTTTTTTTACAGTGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGGCTGAAGTGGCTACTCTCATGTTGATACTCATAGAAGAGGAAGACGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATGACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGACCCGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACGATGCTACCTTCGATCTGCCCGAAGCAACGATTATGCATCGTGCTTCGCTTTTTAGCTTCGGGAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTTTGTACACACATAATAAATGAATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGATAACAGTTCCATACTAATACTCTCCTCTTACTTATAAGATGACCACTTTATCTAAGCTGTTTGTATATATAGTAATTTTAAGTTTGGTTTCGTTTTCTGGTGCTCGTGTTATTATA ] [+] EMBL BX623288 [ GCTGAAGTGGCTACTCTCATGTTGATACTCATAGAAGAGGAAGGCGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATGACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGACCCGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATAGGATTGGTCCAAAAATTGAGCGACAAGATACAACGATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGGAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCGTATTGTGCGTGATGTTTGTACATACATAATAAATGAATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGGTAACAATTCCATACTAATACTCTCTTCTTACTTATAAGATGACCACTTTATCTAAGCTGTTTGTATATATAGTAATTTTAAGTTTGGTTTCGTTTTCTGGTGCTCGTGTTATTAAAGTCTTTTTTTCTANAACTAATATATTGCCTAAAAACTGCTGTTATACTATTTAACAAATGAACTTGTTGCAATAAACAACTATTCAGGTCATGTCACTAACGTAACCACAGGGTGAGAATATTTCTTTTG] [+] EMBL BM639598 [ ccgGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACGATGCTACCTTCGATCTGCCCGAAGCAACGATTATGCATTGGGCTTCGCTTTTTAGCTTCGGGAGACTCATATGAATCTCTTGCTTCTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTTTGTACACACATAATAAATTAATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGATAACAGTTCCATACTAATACTCTCCTCTTACTTATAAGATGA ] consensusID : consensus_7165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [AATGCGGAGATCACTCCGGTTGTGTTTTTGCCGTGATACACAAAGTTTCTTTTTTTTACAGTGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGGCTGAAGTGGCTACTCTCATGTTCATACTCATAGAAGAGGAAGACGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATAACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAAATGAGCGACAAGATACAACGATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGAAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTNTGTACACACATAATAAATGAATNGAAGGAATACGTTAAGGTATNATNTCACTAAAAAAAAAA] [+] EMBL CF541976 [AATGCGGAGATCACTCCGGTTGTGTTTTTGCCGTGATACACAAAGTTTCTTTTTTTTACAGTGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGGCTGAAGTGGCTACTCTCATGTTCATACTCATAGAAGAGGAAGACGAAGAACTGCAGCAAGAGGAAAATGCACGGCGCTGCTGGATAACCGATCTATTTCTGGAGAGGGAAAGCGTTTGGCTGTTTAGGGCGATAGATGGCGAAGGACCAAACAACCGGCTAGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAAATGAGCGACAAGATACAACGATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGAAGACTCATATGAATCTCTTGCTTTTTTGTTTAGGGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTNTGTACACACATAATAAATGAATNGAAGGAATACGTTAAGGTATNATNTCACTAAAAAAAAAA] consensusID : consensus_7165#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence [CGTCCCTAAAGACAGATCCATGCTGGAGTAGAAATGAAAATGAAAGAGACTCTGACGCAATTCGTAAAAATGAAAGGAAAAATTTATGCCAATAAGAGGCGCGGGTCAAAAATCTCAAACATATCAGAGGGCGACAAAGTTAGAATTCGGAATTGTGATTCAGGTAAACTAGAATCGAAATGGTCAAAGGAAAGTTACAAGGTCTTAAAGAAAACTGGTAACGATACCATTGTGTTAAGTGATCAGGGGATACAATACCGTAGACCAGTCGCACACCTCAGGAAGATCGAGAATATGCAACAACTTTCAAACAATAATGGCAAGGCAAGCGAACAGAATAGTAACGTAACGGTAGATCGGGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACTATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGGGAGACTCATATGAA] [+] EMBL BX625258 [CGTCCCTAAAGACAGATCCATGCTGGAGTAGAAATGAAAATGAAAGAGACTCTGACGCAATTCGTAAAAATGAAAGGAAAAATTTATGCCAATAAGAGGCGCGGGTCAAAAATCTCAAACATATCAGAGGGCGACAAAGTTAGAATTCGGAATTGTGATTCAGGTAAACTAGAATCGAAATGGTCAAAGGAAAGTTACAAGGTCTTAAAGAAAACTGGTAACGATACCATTGTGTTAAGTGATCAGGGGATACAATACCGTAGACCAGTCGCACACCTCAGGAAGATCGAGAATATGCAACAACTTTCAAACAATAATGGCAAGGCAAGCGAACAGAATAGTAACGTAACGGTAGATCGGGAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCAAAAATTGAGCGACAAGATACAACTATGCGACCTTCGATCTGCCCGAAGCAACGATTATGCATCGGGCTTCGCTTTTTAGCTTCGGGGAGACTCATATGAA] [+] EMBL BX614550 [ AAAACGGGGAACGATACCATTGGGGTAAGTGATCAGGGGAAACAATACCGTAGACCAGTCGCACACCTCAGGAAGAACGAGAATATGCAACAACTTTCAAACAATAAGGGCAAGGCAAGCGAACAGAATAGTAACGTAACGGTAGAACGGGAAAGTGTTCAACGTGTGAATCGCGAAGAATTGTACTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7165#0 ------------------------------------------------------------ consensus_7165#1 ------------------------------------------------------------ consensus_7165#2 CGTCCCTAAAGACAGATCCATGCTGGAGTAGAAATGAAAATGAAAGAGACTCTGACGCAA 60 consensus_7165#0 ----------------------------CCGGTTTTTGCCGTGATACACTAAGTTTCTTT 32 consensus_7165#1 --------AATGCGGAGATCACTCCGGTTGTGTTTTTGCCGTGATACACAAAGTTTCTTT 52 consensus_7165#2 TTCGTAAAAATGAAAGGAAAAATTTATGCCAATAAGAGGCGCGGGTCAAAAATCTCAAAC 120 * * ** * ** ** * consensus_7165#0 TTTT-ACAG--TGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGG--CTGAAG 87 consensus_7165#1 TTTTTACAG--TGGAAAAATGGAAATAAATCAACTTCTTCCAACTTTAGCGG--CTGAAG 108 consensus_7165#2 ATATCAGAGGGCGACAAAGTTAGAATTCGGAATTGTGATTCAGGTAAACTAGAATCGAAA 180 * * * ** * *** * *** * * * ** * * * *** consensus_7165#0 TGGCTACTCTCATGTT-GATACTCATAGAAGAGGAAGACGAAGA----ACTGCAGCAAGA 142 consensus_7165#1 TGGCTACTCTCATGTT-CATACTCATAGAAGAGGAAGACGAAGA----ACTGCAGCAAGA 163 consensus_7165#2 TGGTCAAAGGAAAGTTACAAGGTCTTAAAGAAAACTGGTAACGATACCATTGTGTTAAGT 240 *** * * *** * ** ** * * * * ** * ** *** consensus_7165#0 GG--AAAATGCACGGCGCTGCTGGATGACCGATCTATTTCTGGAGA--GGGAA------- 191 consensus_7165#1 GG--AAAATGCACGGCGCTGCTGGATAACCGATCTATTTCTGGAGA--GGGAA------- 212 consensus_7165#2 GATCAGGGGATACAATACCGTAGACCAGTCGCACACCTCAGGAAGATCGAGAATATGCAA 300 * * ** * * * ** * * * *** * *** consensus_7165#0 -AGCGTTTGGACCCGGCTGTTTAGGGCGATAGATGGCGAAGGACCA-AACAACCGGCTAG 249 consensus_7165#1 -AGCGTTTGG------CTGTTTAGGGCGATAGATGGCGAAGGACCA-AACAACCGGCTAG 264 consensus_7165#2 CAACTTTCAAACAATAATGGCAAGGCAAGCGAACAGAATAGTAACGTAACGGTAGATCGG 360 * * ** ** *** * * ** * * *** * * consensus_7165#0 -AAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCA 308 consensus_7165#1 -AAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCA 323 consensus_7165#2 GAAAGTTTTCTACGTGTGAATCGCGAAGAATTTTACTATCTTTTAAATCGGATTGGTCCA 420 *********************************************************** consensus_7165#0 AAAATTGAGCGACAAGATACAACGATGCTACCTTCGATCTGCCCGAAGCAACGATTATGC 368 consensus_7165#1 AAAAATGAGCGACAAGATACAACGATGCGACCTTCGATCTGCCCGAAGCAACGATTATGC 383 consensus_7165#2 AAAATTGAGCGACAAGATACAACTATGCGACCTTCGATCTGCCCGAAGCAACGATTATGC 480 **** ****************** **** ******************************* consensus_7165#0 ATCGGGCTTCGCTTTTTAGCTTCGGG-AGACTCATATGAATCTCTTGCTTTTTTGTTTAG 427 consensus_7165#1 ATCGGGCTTCGCTTTTTAGCTTCGGA-AGACTCATATGAATCTCTTGCTTTTTTGTTTAG 442 consensus_7165#2 ATCGGGCTTCGCTTTTTAGCTTCGGGGAGACTCATATGAA-------------------- 520 ************************* ************* consensus_7165#0 GGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTTTGTACACACATAATAAATGA 487 consensus_7165#1 GGTTTCTAGCAGTTCCGTATCCCTTATTGTGCGTGATGTNTGTACACACATAATAAATGA 502 consensus_7165#2 ------------------------------------------------------------ consensus_7165#0 ATTGAAGGAATACGTTAAGGTATTATTTCACTGATTTAATATGATAACAGTTCCATACTA 547 consensus_7165#1 ATNGAAGGAATACGTTAAGGTATNATNTCACTAAAAAAAAAA------------------ 544 consensus_7165#2 ------------------------------------------------------------ consensus_7165#0 ATACTCTCCTCTTACTTATAAGATGACCACTTTATCTAAGCTGTTTGTATATATAGTAAT 607 consensus_7165#1 ------------------------------------------------------------ consensus_7165#2 ------------------------------------------------------------ consensus_7165#0 TTTAAGTTTGGTTTCGTTTTCTGGTGCTCGTGTTATTATAGTCTTTTTTTCTANAACTAA 667 consensus_7165#1 ------------------------------------------------------------ consensus_7165#2 ------------------------------------------------------------ consensus_7165#0 TATATTGCCTAAAAACTGCTGTTATACTATTTAACAAATGAACTTGTTGCAATAAACAAC 727 consensus_7165#1 ------------------------------------------------------------ consensus_7165#2 ------------------------------------------------------------ consensus_7165#0 TATTCAGGTCATGTCACTAACGTAACCACAGGGTGAGAATATTTCTTTTG 777 consensus_7165#1 -------------------------------------------------- consensus_7165#2 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||