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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence
[CCCCGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATCCTAACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAAAACATTCGAGAGGACAACCCATCGAACCAAACGTCACGCTGGTCATCGAACACCAACACACCGCCCCAATATTTGGTCTTGAAGCTGGAACGGCCAGCGATCGTGACGAAGATTAAGTTTGGAAAGTACGAGAAAACGCATGTCTGCAATCTGCGCAAATTCAAAATCCTTGGTGGACTGGAAGAGGAGCGAATGGTGCTGCTATTCGAAGGCGGTTTAAGAAACGATTCAGTGCCGGAAACGTTCAACTTAAAGCATCGCACAAATTCCGGCGAGCTGTTGCCGATCAAGTTCATTCAGATCGTTCCGCTACTGTCATGGGGTCCAAGCTTCAACTTTTGCATCTGGTACGTCGAGCTGCTGGGCATCGAGGATTCT]
[+] EMBL BM606168 [ CCGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATCCTAACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAAAACATTCGAGAGGACAACCCATCGAACCAAACGTCACGCTGGTCATCGAACACCAACACACCGCCCCAATATTTGGTCTTGAAGCTGGAACGGCCAGCGATCGTGACGAAGATTAAGTTTGGAAAGTACGAGAAAACGCATGTCTGCAATCTGCGCAAATTCAAAATCCTTGGTGGACTGGAAGAGGAGCGAATGGTGCTGCTATTCGAAGGCGGTTTAAGAAACGATTCAGTGCCGGAAACGTTCAACTTAAAGCATCGCACAAATTCCGGCGAGCTGTTGCCGATCAAGTTCATTCAGATCGTTCCGCTACTGTCATGGGGTCCAAGCTTCAACTTTTGCATCTGGTACGTCGAGCTGCTGGGCATCGAGGATTCT]
[+] EMBL BM579562 [ccgaGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATTCTTACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACTTAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAAAACATTCGAGAGGACAACCCATCGAACCAAACGTCACGCTGGTCATCGAACACCAACACACCGCCCCAATATTTGGTCTTGAAGCTGGAACGGCCAGCGATCGTGACGAAGATTAAGTTTGGAAAGTACGAGAAAACGCATGTCTGCAATCTGCGCAAATTCAAAATCCTTGGTGGACTGGAAGAGGAGCGAATGGTGTTGCTATTCGAAGGCGGTTTAAGAAACGATTCAGTGCCGGAAACGTTCAACTTAAAGCATCGCACAAATTCCGGCGAGCTGTTGCCGATCAAGTTCATTCAGATCGTTCCGCTACTGTCATGGGGTCCAAGCTTCAACTTTTGCATCTGGTACGTCGAGC ]
consensusID : consensus_7168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence
[CCGCCCACGCGTCCGCGGGGTTCCAATGTTTTGATGCCAGTGGATCGGTATCTTATTTTTGCAAATATCACACTCACGCTCCGTCGTTACCTTTCTACCGCATTTCTGTCTCACGTTTTTGTGAAACACACCACTGTTTGCGATGAACAAAGTCGTCAACGTATTCCTTGGCCAAGTACCTTGCTATACAGTGAGGACTTCTCAGCTATGTGTGGGCCGTTTCTACGGCACTGCCGGAAATGACCCCAAGATTCCAAAAAATGTGATCGAGCATCTGAACACAGCCCAAGAGCAGCAAACGAATGGAGTTGTATACGACAAGAAACCGTTCCGGATGGAGCTGGAAGAGGGAAAGCGTTATTCCTGGTGCCTATGTGGGCGCTCCAAAGGTCAACCGCTATGCGATGGAACGCATAAGCTAGTGCAATATAAAATCACGCAGCGCCCCATTCGGTTTCAGGTGGAAAAATCCGGCACATATTGGCTGTGCAATTGCAAGCAGACGAAAAATCGACCATTCTGTGATGGAACGCACAAATGTGAAGAAGTTCAGAAAACCGCTGGAAAATAGTTTCAGCATATCAAGCTAGAACCAACGAACAACAGTTCTTGTTACTCTACATTATTGCTGGCATTCTGTATCGTA]
[+] EMBL BM583623 [CCGCCCACGCGTCCGCGGGGTTCCAATGTTTTGATGCCAGTGGATCGGTATCTTATTTTTGCAAATATCACACTCACGCTCCGTCGTTACCTTTCTACCGCATTTCTGTCTCACGTTTTTGTGAAACACACCACTGTTTGCGATGAACAAAGTCGTCAACGTATTCCTTGGCCAAGTACCTTGCTATACAGTGAGGACTTCTCAGCTATGTGTGGGCCGTTTCTACGGCACTGCCGGAAATGACCCCAAGATTCCAAAAAATGTGATCGAGCATCTGAACACAGCCCAAGAGCAGCAAACGAATGGAGTTGTATACGACAAGAAACCGTTCCGGATGGAGCTGGAAGAGGGAAAGCGTTATTCCTGGTGCCTATGTGGGCGCTCCAAAGGTCAACCGCTATGCGATGGAACGCATAAGCTAGTGCAATATAAAATCACGCAGCGCCCCATTCGGTTTCAGGTGGAAAAATCCGGCACATATTGGCTGTGCAATTGCAAGCAGACGAAAAATCGACCATTCTGTGATGGAACGCACAAATGTGAAGAAGTTCAGAAAACCGCTGGAAAATAGTTTCAGCATATCAAGCTAGAACCAACGAACAACAGTTCTTGTTACTCTACATTATTGCTGGCAT ]
[+] EMBL BX617148 [ ACACTCACGCTCCGTCGTTAATTTTCTACCGCATTTCTGTCTCGCGTTTTTGTGAAACACACCACTGTTTGCGATGAACAAAGTCGTCAACGTATTCCTTGGCCAAGTACCTTGCTATACAGTGAGGGCTTCTCAGCTATGTGTGGGCCGTTTCTACGGCACTGCCGGCAATGACCCCAAGATTCCAAAAAATGTGATCGAGCATCTGAACACAGCCCAAGAGCAGCAAACGAATGGAGTTGTATACGACAAGAAACCGTTCCGGATGGAGCTGGAAGAGGGAAAGCGTTATTCCTGGTGCCTATGTGGGCGCTCCAAAGGTCAACCGCTATGCGATGGAACGCATAAGCTAGTGCAATATAAAATCACGCAGCGCCCCATTCGGTTTCAGGTGGAAAAATCCGGCACATATTGGCTGTGCAATTGCAAGCAGACGAAAAATCGACCATTCTGTGATGGAACGCACAAATGTGAAGAAGTTCAGAAAACCGCTGGAAAATAGTTTCAGCATATCAAGCTAGAACCAACGAACAACAGTTCTTGTTACTCTACATTATTGCTGGCATTCTGTATCGTA]
consensusID : consensus_7168#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 612 fasta sequence
[ATGCGGTAGAAAGGTAACGACGGAGCGTGAGTGTGATATTTGCAAAAATAAGATACCGATCCACTGGCATCAAAACATTGGAACCCCGGTGCGGAAGAAACGCAACTGACAGTCGATGCCGACAGTGGTGTCACCAATACCAATGCAAAACTGCCACACCCATCTGTCAACCGTGTGCGGTACAGCAACTGTTGGAGTTGTGTTGGTGTACTGTGTTCGGAGGAGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATCCTAACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCA--GTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAGTAAGTACGGTAGCAGTAATTTAAAGATAGTACAATCGCTCGTGTATGCTTGATCAAGAACGCTACTACCACGGACGCGTGGGCGG]
[-] EMBL BM595740 [ATGCGGTAGAAAGGTAACGACGGAGCGTGAGTGTGATATTTGCAAAAATAAGATACCGATCCACTGGCATCAAAACATTGGAACCCCGGTGCGGAAGAAACGCAACTGACAGTCGATGCCGACAGTGGTGTCACCAATACCAATGCAAAACTGCCACACCCATCTGTCAACCGTGTGCGGTACAGCAACTGTTGGAGTTGTGTTGGTGTACTGTGTTCGGAGGAGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATCCTAACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCA GTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAGTAAGTACGGTAGCAGTAATTTAAAGATAGTACAATCGCTCGTGTATGCTTGATCAAGAACGCTACTACCACGGACGCGTGGGCGG]
[-] EMBL BX603028 [ CAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCAGTGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAGTAAGTACGGTAGCAGTAATTTAAAGATAGTACAATCGCTCGTGTATGCTTGATCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7168#0 ------------------------------------------------------------
consensus_7168#2 ATGCGGTAGAAAGGTAACGACGGAGCGTGAGTGTGATATTTGCAAAAATAAGATACCGAT 60
consensus_7168#1 ---------------------------------CCGCCCACGCGTCCGCGGGGTTCCAAT 27
consensus_7168#0 ------------------------------------------------------------
consensus_7168#2 CCACTGGCATCAAAACATTGGAACCCCGGTGCGGAAGAAACGCAACTGACAGTCGATGCC 120
consensus_7168#1 GTTTTGATGCCAGTGGATCGGTATCTTATTTTTGCAAATATCACACTCACGCTCCGTCGT 87
consensus_7168#0 ------------------------------------------------------------
consensus_7168#2 GACAGTGGTGTCACCAATACCAATGCAAAACTGCCACACCCATCTGTCAACCGTGTGCGG 180
consensus_7168#1 TACCTTTCTACCGC----ATTTCTGTCTCACGTTTTTGTGAAACACACCACTGTTTGCGA 143
consensus_7168#0 ------------------------------------------CCCCGGTAATCACGTAGC 18
consensus_7168#2 TACAGCAACTGTTGGAGTTGTG--TTGGTGTACTGTGTTCGGAGGAGGTAATCACGTAGC 238
consensus_7168#1 TGAACAAAGTCGTCAACGTATTCCTTGGCCAAGTACCTTGCTATACAGTGAGGACTTCTC 203
** * ** * *
consensus_7168#0 -GCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAG 77
consensus_7168#2 -GCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAG 297
consensus_7168#1 AGCTATGTGTGGGCCGTTTCTACGGCACTGCCGGAAAT--GACCCCAAGATTCCAAAAAA 261
** * **** * ** * * * ** * *** * ** **
consensus_7168#0 ATTGGTCTCGCTTGCAACAATACAATCCTA----ACTAAACAGATTAAGTGTACAAAGTG 133
consensus_7168#2 ATTGGTCTCGCTTGCAACAATACAATCCTA----ACTAAACAGATTAAGTGTACAAAGTG 353
consensus_7168#1 TGTGATCGAGCATCTG--AACACAGCCCAAGAGCAGCAAACGAATGGAGT-TGTATACGA 318
** ** ** * ** *** ** * * **** ** *** * * *
consensus_7168#0 AAACAAACCGCGATTGAAAGTAATTGACACGGGAACGC---ACCCTTAAAACCCATCCAT 190
consensus_7168#2 AAACAAACCGCGATTGAAAGTAATTGACACGGGAACGC---ACCCTTAAAACCCATCCAT 410
consensus_7168#1 CAAGAAACCGTTCCGGATGGAGCTGGAAGAGGGAAAGCGTTATTCCTGGTGCCTATGTGG 378
** ****** ** * * ** ***** ** * * * ** **
consensus_7168#0 CCATT----GAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACAT 246
consensus_7168#2 CCATT----GAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACAT 466
consensus_7168#1 GCGCTCCAAAGGTCAACCGC-TATGCGATGGAACGCATAAGCTAGTGCAATATAAAATCA 437
* * **** * * * ** * * * * *** * **** * *
consensus_7168#0 AAAAAAGCTAGACTACGAT--ATTTACAAATACTCGAGCTAT-TCGTCGTCGTATTTGCC 303
consensus_7168#2 AAAAAAGCTAGACTACGAT--ATTTACAAATACTCGAGCTAT-TCGTCGTCGTATTTGCC 523
consensus_7168#1 CGCAGCGCCCCATTCGGTTTCAGGTGGAAAAATCCGGCACATATTGGCTGTGCAATTGC- 496
* ** * * * * * * *** * ** ** * * * * * ****
consensus_7168#0 GGAAAACATTCGAGAGGA-CAACCCATCGAACCAAACGTCACGCTGGTCATCGAACACCA 362
consensus_7168#2 GGAGTAAGTACGGTAGCAGTAATTTAAAGATAGTACAATCGCTCGTGTATGCTTGATCAA 583
consensus_7168#1 -AAGCAGACGAAAAATCGACCATTCTGTGATGGAACGCACAAATGTGAAGAAGTTCAGAA 555
* * * * ** * * * *
consensus_7168#0 ACACACC--GCCCCAATATTTGGTCTTGAAGCTGGAAC----GGCCAGCGATCGTGACGA 416
consensus_7168#2 GAACGCT--ACTACCAC----GGACGCGTGGGCGG------------------------- 612
consensus_7168#1 AACCGCTGGAAAATAGTTTCAGCATATCAAGCTAGAACCAACGAACAACAGTTCTTGTTA 615
* * * * *
consensus_7168#0 AGATTAAGTTTGGAAAGTACGAGAAAACGCATGTCTGCAATCTGCGCAAATTCAAAATCC 476
consensus_7168#2 ------------------------------------------------------------
consensus_7168#1 CTCTACATTATTGCTGGCATTCTGTATCGTA----------------------------- 646
consensus_7168#0 TTGGTGGACTGGAAGAGGAGCGAATGGTGCTGCTATTCGAAGGCGGTTTAAGAAACGATT 536
consensus_7168#2 ------------------------------------------------------------
consensus_7168#1 ------------------------------------------------------------
consensus_7168#0 CAGTGCCGGAAACGTTCAACTTAAAGCATCGCACAAATTCCGGCGAGCTGTTGCCGATCA 596
consensus_7168#2 ------------------------------------------------------------
consensus_7168#1 ------------------------------------------------------------
consensus_7168#0 AGTTCATTCAGATCGTTCCGCTACTGTCATGGGGTCCAAGCTTCAACTTTTGCATCTGGT 656
consensus_7168#2 ------------------------------------------------------------
consensus_7168#1 ------------------------------------------------------------
consensus_7168#0 ACGTCGAGCTGCTGGGCATCGAGGATTCT 685
consensus_7168#2 -----------------------------
consensus_7168#1 -----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||