These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence [CCCCGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATCCTAACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAAAACATTCGAGAGGACAACCCATCGAACCAAACGTCACGCTGGTCATCGAACACCAACACACCGCCCCAATATTTGGTCTTGAAGCTGGAACGGCCAGCGATCGTGACGAAGATTAAGTTTGGAAAGTACGAGAAAACGCATGTCTGCAATCTGCGCAAATTCAAAATCCTTGGTGGACTGGAAGAGGAGCGAATGGTGCTGCTATTCGAAGGCGGTTTAAGAAACGATTCAGTGCCGGAAACGTTCAACTTAAAGCATCGCACAAATTCCGGCGAGCTGTTGCCGATCAAGTTCATTCAGATCGTTCCGCTACTGTCATGGGGTCCAAGCTTCAACTTTTGCATCTGGTACGTCGAGCTGCTGGGCATCGAGGATTCT] [+] EMBL BM606168 [ CCGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATCCTAACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAAAACATTCGAGAGGACAACCCATCGAACCAAACGTCACGCTGGTCATCGAACACCAACACACCGCCCCAATATTTGGTCTTGAAGCTGGAACGGCCAGCGATCGTGACGAAGATTAAGTTTGGAAAGTACGAGAAAACGCATGTCTGCAATCTGCGCAAATTCAAAATCCTTGGTGGACTGGAAGAGGAGCGAATGGTGCTGCTATTCGAAGGCGGTTTAAGAAACGATTCAGTGCCGGAAACGTTCAACTTAAAGCATCGCACAAATTCCGGCGAGCTGTTGCCGATCAAGTTCATTCAGATCGTTCCGCTACTGTCATGGGGTCCAAGCTTCAACTTTTGCATCTGGTACGTCGAGCTGCTGGGCATCGAGGATTCT] [+] EMBL BM579562 [ccgaGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATTCTTACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACTTAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAAAACATTCGAGAGGACAACCCATCGAACCAAACGTCACGCTGGTCATCGAACACCAACACACCGCCCCAATATTTGGTCTTGAAGCTGGAACGGCCAGCGATCGTGACGAAGATTAAGTTTGGAAAGTACGAGAAAACGCATGTCTGCAATCTGCGCAAATTCAAAATCCTTGGTGGACTGGAAGAGGAGCGAATGGTGTTGCTATTCGAAGGCGGTTTAAGAAACGATTCAGTGCCGGAAACGTTCAACTTAAAGCATCGCACAAATTCCGGCGAGCTGTTGCCGATCAAGTTCATTCAGATCGTTCCGCTACTGTCATGGGGTCCAAGCTTCAACTTTTGCATCTGGTACGTCGAGC ] consensusID : consensus_7168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence [CCGCCCACGCGTCCGCGGGGTTCCAATGTTTTGATGCCAGTGGATCGGTATCTTATTTTTGCAAATATCACACTCACGCTCCGTCGTTACCTTTCTACCGCATTTCTGTCTCACGTTTTTGTGAAACACACCACTGTTTGCGATGAACAAAGTCGTCAACGTATTCCTTGGCCAAGTACCTTGCTATACAGTGAGGACTTCTCAGCTATGTGTGGGCCGTTTCTACGGCACTGCCGGAAATGACCCCAAGATTCCAAAAAATGTGATCGAGCATCTGAACACAGCCCAAGAGCAGCAAACGAATGGAGTTGTATACGACAAGAAACCGTTCCGGATGGAGCTGGAAGAGGGAAAGCGTTATTCCTGGTGCCTATGTGGGCGCTCCAAAGGTCAACCGCTATGCGATGGAACGCATAAGCTAGTGCAATATAAAATCACGCAGCGCCCCATTCGGTTTCAGGTGGAAAAATCCGGCACATATTGGCTGTGCAATTGCAAGCAGACGAAAAATCGACCATTCTGTGATGGAACGCACAAATGTGAAGAAGTTCAGAAAACCGCTGGAAAATAGTTTCAGCATATCAAGCTAGAACCAACGAACAACAGTTCTTGTTACTCTACATTATTGCTGGCATTCTGTATCGTA] [+] EMBL BM583623 [CCGCCCACGCGTCCGCGGGGTTCCAATGTTTTGATGCCAGTGGATCGGTATCTTATTTTTGCAAATATCACACTCACGCTCCGTCGTTACCTTTCTACCGCATTTCTGTCTCACGTTTTTGTGAAACACACCACTGTTTGCGATGAACAAAGTCGTCAACGTATTCCTTGGCCAAGTACCTTGCTATACAGTGAGGACTTCTCAGCTATGTGTGGGCCGTTTCTACGGCACTGCCGGAAATGACCCCAAGATTCCAAAAAATGTGATCGAGCATCTGAACACAGCCCAAGAGCAGCAAACGAATGGAGTTGTATACGACAAGAAACCGTTCCGGATGGAGCTGGAAGAGGGAAAGCGTTATTCCTGGTGCCTATGTGGGCGCTCCAAAGGTCAACCGCTATGCGATGGAACGCATAAGCTAGTGCAATATAAAATCACGCAGCGCCCCATTCGGTTTCAGGTGGAAAAATCCGGCACATATTGGCTGTGCAATTGCAAGCAGACGAAAAATCGACCATTCTGTGATGGAACGCACAAATGTGAAGAAGTTCAGAAAACCGCTGGAAAATAGTTTCAGCATATCAAGCTAGAACCAACGAACAACAGTTCTTGTTACTCTACATTATTGCTGGCAT ] [+] EMBL BX617148 [ ACACTCACGCTCCGTCGTTAATTTTCTACCGCATTTCTGTCTCGCGTTTTTGTGAAACACACCACTGTTTGCGATGAACAAAGTCGTCAACGTATTCCTTGGCCAAGTACCTTGCTATACAGTGAGGGCTTCTCAGCTATGTGTGGGCCGTTTCTACGGCACTGCCGGCAATGACCCCAAGATTCCAAAAAATGTGATCGAGCATCTGAACACAGCCCAAGAGCAGCAAACGAATGGAGTTGTATACGACAAGAAACCGTTCCGGATGGAGCTGGAAGAGGGAAAGCGTTATTCCTGGTGCCTATGTGGGCGCTCCAAAGGTCAACCGCTATGCGATGGAACGCATAAGCTAGTGCAATATAAAATCACGCAGCGCCCCATTCGGTTTCAGGTGGAAAAATCCGGCACATATTGGCTGTGCAATTGCAAGCAGACGAAAAATCGACCATTCTGTGATGGAACGCACAAATGTGAAGAAGTTCAGAAAACCGCTGGAAAATAGTTTCAGCATATCAAGCTAGAACCAACGAACAACAGTTCTTGTTACTCTACATTATTGCTGGCATTCTGTATCGTA] consensusID : consensus_7168#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 612 fasta sequence [ATGCGGTAGAAAGGTAACGACGGAGCGTGAGTGTGATATTTGCAAAAATAAGATACCGATCCACTGGCATCAAAACATTGGAACCCCGGTGCGGAAGAAACGCAACTGACAGTCGATGCCGACAGTGGTGTCACCAATACCAATGCAAAACTGCCACACCCATCTGTCAACCGTGTGCGGTACAGCAACTGTTGGAGTTGTGTTGGTGTACTGTGTTCGGAGGAGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATCCTAACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCA--GTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAGTAAGTACGGTAGCAGTAATTTAAAGATAGTACAATCGCTCGTGTATGCTTGATCAAGAACGCTACTACCACGGACGCGTGGGCGG] [-] EMBL BM595740 [ATGCGGTAGAAAGGTAACGACGGAGCGTGAGTGTGATATTTGCAAAAATAAGATACCGATCCACTGGCATCAAAACATTGGAACCCCGGTGCGGAAGAAACGCAACTGACAGTCGATGCCGACAGTGGTGTCACCAATACCAATGCAAAACTGCCACACCCATCTGTCAACCGTGTGCGGTACAGCAACTGTTGGAGTTGTGTTGGTGTACTGTGTTCGGAGGAGGTAATCACGTAGCGCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAGATTGGTCTCGCTTGCAACAATACAATCCTAACTAAACAGATTAAGTGTACAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCA GTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAGTAAGTACGGTAGCAGTAATTTAAAGATAGTACAATCGCTCGTGTATGCTTGATCAAGAACGCTACTACCACGGACGCGTGGGCGG] [-] EMBL BX603028 [ CAAAGTGAAACAAACCGCGATTGAAAGTAATTGACACGGGAACGCACCCTTAAAACCCATCCATCCATTGAGTCAGCAGTGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACATAAAAAAGCTAGACTACGATATTTACAAATACTCGAGCTATTCGTCGTCGTATTTGCCGGAGTAAGTACGGTAGCAGTAATTTAAAGATAGTACAATCGCTCGTGTATGCTTGATCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7168#0 ------------------------------------------------------------ consensus_7168#2 ATGCGGTAGAAAGGTAACGACGGAGCGTGAGTGTGATATTTGCAAAAATAAGATACCGAT 60 consensus_7168#1 ---------------------------------CCGCCCACGCGTCCGCGGGGTTCCAAT 27 consensus_7168#0 ------------------------------------------------------------ consensus_7168#2 CCACTGGCATCAAAACATTGGAACCCCGGTGCGGAAGAAACGCAACTGACAGTCGATGCC 120 consensus_7168#1 GTTTTGATGCCAGTGGATCGGTATCTTATTTTTGCAAATATCACACTCACGCTCCGTCGT 87 consensus_7168#0 ------------------------------------------------------------ consensus_7168#2 GACAGTGGTGTCACCAATACCAATGCAAAACTGCCACACCCATCTGTCAACCGTGTGCGG 180 consensus_7168#1 TACCTTTCTACCGC----ATTTCTGTCTCACGTTTTTGTGAAACACACCACTGTTTGCGA 143 consensus_7168#0 ------------------------------------------CCCCGGTAATCACGTAGC 18 consensus_7168#2 TACAGCAACTGTTGGAGTTGTG--TTGGTGTACTGTGTTCGGAGGAGGTAATCACGTAGC 238 consensus_7168#1 TGAACAAAGTCGTCAACGTATTCCTTGGCCAAGTACCTTGCTATACAGTGAGGACTTCTC 203 ** * ** * * consensus_7168#0 -GCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAG 77 consensus_7168#2 -GCAAGGTGTAGTTTCGTTTGGCAAAATTTCCATCTTTTCGACAATTGCGTGCCGCCAAG 297 consensus_7168#1 AGCTATGTGTGGGCCGTTTCTACGGCACTGCCGGAAAT--GACCCCAAGATTCCAAAAAA 261 ** * **** * ** * * * ** * *** * ** ** consensus_7168#0 ATTGGTCTCGCTTGCAACAATACAATCCTA----ACTAAACAGATTAAGTGTACAAAGTG 133 consensus_7168#2 ATTGGTCTCGCTTGCAACAATACAATCCTA----ACTAAACAGATTAAGTGTACAAAGTG 353 consensus_7168#1 TGTGATCGAGCATCTG--AACACAGCCCAAGAGCAGCAAACGAATGGAGT-TGTATACGA 318 ** ** ** * ** *** ** * * **** ** *** * * * consensus_7168#0 AAACAAACCGCGATTGAAAGTAATTGACACGGGAACGC---ACCCTTAAAACCCATCCAT 190 consensus_7168#2 AAACAAACCGCGATTGAAAGTAATTGACACGGGAACGC---ACCCTTAAAACCCATCCAT 410 consensus_7168#1 CAAGAAACCGTTCCGGATGGAGCTGGAAGAGGGAAAGCGTTATTCCTGGTGCCTATGTGG 378 ** ****** ** * * ** ***** ** * * * ** ** consensus_7168#0 CCATT----GAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACAT 246 consensus_7168#2 CCATT----GAGTCAGCAGTGTCAGCAGAGCAGAGAAATGGCTGGAACAATTTCGGACAT 466 consensus_7168#1 GCGCTCCAAAGGTCAACCGC-TATGCGATGGAACGCATAAGCTAGTGCAATATAAAATCA 437 * * **** * * * ** * * * * *** * **** * * consensus_7168#0 AAAAAAGCTAGACTACGAT--ATTTACAAATACTCGAGCTAT-TCGTCGTCGTATTTGCC 303 consensus_7168#2 AAAAAAGCTAGACTACGAT--ATTTACAAATACTCGAGCTAT-TCGTCGTCGTATTTGCC 523 consensus_7168#1 CGCAGCGCCCCATTCGGTTTCAGGTGGAAAAATCCGGCACATATTGGCTGTGCAATTGC- 496 * ** * * * * * * *** * ** ** * * * * * **** consensus_7168#0 GGAAAACATTCGAGAGGA-CAACCCATCGAACCAAACGTCACGCTGGTCATCGAACACCA 362 consensus_7168#2 GGAGTAAGTACGGTAGCAGTAATTTAAAGATAGTACAATCGCTCGTGTATGCTTGATCAA 583 consensus_7168#1 -AAGCAGACGAAAAATCGACCATTCTGTGATGGAACGCACAAATGTGAAGAAGTTCAGAA 555 * * * * ** * * * * consensus_7168#0 ACACACC--GCCCCAATATTTGGTCTTGAAGCTGGAAC----GGCCAGCGATCGTGACGA 416 consensus_7168#2 GAACGCT--ACTACCAC----GGACGCGTGGGCGG------------------------- 612 consensus_7168#1 AACCGCTGGAAAATAGTTTCAGCATATCAAGCTAGAACCAACGAACAACAGTTCTTGTTA 615 * * * * * consensus_7168#0 AGATTAAGTTTGGAAAGTACGAGAAAACGCATGTCTGCAATCTGCGCAAATTCAAAATCC 476 consensus_7168#2 ------------------------------------------------------------ consensus_7168#1 CTCTACATTATTGCTGGCATTCTGTATCGTA----------------------------- 646 consensus_7168#0 TTGGTGGACTGGAAGAGGAGCGAATGGTGCTGCTATTCGAAGGCGGTTTAAGAAACGATT 536 consensus_7168#2 ------------------------------------------------------------ consensus_7168#1 ------------------------------------------------------------ consensus_7168#0 CAGTGCCGGAAACGTTCAACTTAAAGCATCGCACAAATTCCGGCGAGCTGTTGCCGATCA 596 consensus_7168#2 ------------------------------------------------------------ consensus_7168#1 ------------------------------------------------------------ consensus_7168#0 AGTTCATTCAGATCGTTCCGCTACTGTCATGGGGTCCAAGCTTCAACTTTTGCATCTGGT 656 consensus_7168#2 ------------------------------------------------------------ consensus_7168#1 ------------------------------------------------------------ consensus_7168#0 ACGTCGAGCTGCTGGGCATCGAGGATTCT 685 consensus_7168#2 ----------------------------- consensus_7168#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||