These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 966 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTTTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGTAAATAGTTGTAAAAAAGTGTACAAGTAACTCAAGCTTACGCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCGTTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGCTCGGCGCCTCGCACAACAGCCTCGACCCTTGCCGGACACTGGCCGGCGACGATGCGGACGACCGGTCGGTGCTCGGCATCTCGAAGCAGCTGCTGATGGAGGACGTGCTGAATCACCTGAAAACGCAAACCAAATGGCAGCGCATCTACACCGAGTATCTGGACCAGCTAAAATTCCTCAAGGAGCGGGATGGCGGCG-GCGGCGGCCGAGACAAACCACTGATGGAGTAGTGCATGGAGTGTAGCCGAGCGTACAATAAAACTCTAAACTCTACGGTAAGCTTGTCTCACAAAAAAAAAAAAAAAAAAAAAGGCCA] [+] EMBL BM646428 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTAAAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTT ] [+] EMBL BM592803 [ ccgAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTTTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGTAAATAGCTGTAAAAAAGTGTACAAGTAACTCAAGCTTACGTTTGCATTGTTTTAAGTGCTTAAAGAGAACCACAAATGAGCCGATTTTGGTAGTTTGTTTTCCTCCCTACTGACCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCTATCGATATTCACCCGAGCGGCGAACGGATCGCTACCGGCGGGCAGGGATGCTACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTACCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAA ] [+] EMBL CNS098LV [ GAAAACA AACAAATTTGGCTCATTTTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGTAAATAGTTGTAAAAAAGTGTACAAGTAACTCAAGCTTACGCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGTCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAAC GGCTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCGTTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGCTCGGCGCCTCGCACAACAGCCTCGACCCTTGCCGGACACTGGCCGGCGACGATGCGGACGACCGGTCGGTGCTCGGCATCTCGAAGCAGCTGCTGATGGAGGACGTGCTGAATCACCTGAAAACGCAAACCAAATGGCAGCGCATCTACACCGAGTATCTGGACCAGCTAAAATTCCTCAAGGAGCGGGATGGCGGCG GCGGCGGCCGAGACAAACCACTGATGGAGTAGTGCATGGAGTGTAGCCGAGCGTACAATAAAACTCTAAACTCTACGGTAAGCTTGTCTCACAAAAAAAAAAAAAAAAAAAAAGGCCA] [-] EMBL CNS098LW [ GCGCGTCCTCTGCCAGATGGACAACCCTCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGCTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGTTCTGGAAAAAGACGCTTAGTGGCAGCGGGGGCGGCATCGGTGCGTTCGGTGGCGGCGGCGGCAAGTCCGTCGAGAACTGGGGCTGCATTTCCACGCTCCGGGGGCACCCCGGGGATGTGCTGGATCTGCTCGGCGCCTCGGACAAAAGCCTCGACCCTTGCCGGAAACTGGCCGGCGACGATGCGGACGACCGGTCGGTGCTCGGCATCTCGAAGCAGCTGCTGATGGAGGACGTGCTGAATCACCTGAAAACGCAAACCAAATGGCAGCGCATCTACACCGAGTTTCTGGACCAGCTAAAATTCCTCAAGGAGCGGGATGGCGGCGCGCGGCGGCCGAGACAAACCACTGA ] consensusID : consensus_7172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [ACCCACGCGTCCGGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTAAAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGGCCTGGTCGCCGCAGGACCGATGGATTGCGA] [+] EMBL BM613166 [ACCCACGCGTCCGGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTAAAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGGCCTGGTCGCCGCAGGACCGATGGATTGCGA] [+] EMBL BM590051 [ CCGGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTAAAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7172#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAAGTGTTCTGAAAACACAACAAATTTGGC 60 consensus_7172#1 --------------ACCCACGCGTCCG-GCAAAGTGTTCTGAAAACACAACAAATTTGGC 45 * ****** * ******************************** consensus_7172#0 TCATTTTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGTAAATAGTTGTA 120 consensus_7172#1 TCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTA 105 ***** ****************************************** *********** consensus_7172#0 AAAAAGTGTACAAGTAACTCAAGCTTACGCTTGCATCGTTTTAAGTGCTTAAAGTGAACC 180 consensus_7172#1 AAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACC 165 ********************* ***** ******************************* consensus_7172#0 AAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAA 240 consensus_7172#1 AAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAA 225 ************************************************************ consensus_7172#0 GATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCA 300 consensus_7172#1 GATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCA 285 ************************************************************ consensus_7172#0 CCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGAT 360 consensus_7172#1 CCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGAT 345 ************************************************************ consensus_7172#0 CTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGT 420 consensus_7172#1 CTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGT 405 ************************************************************ consensus_7172#0 CCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGG 480 consensus_7172#1 CCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGG 465 ************************************************************ consensus_7172#0 GTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAG 540 consensus_7172#1 GTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAG 525 ************************************************************ consensus_7172#0 TGGCAGCGGGGGCGGCATCGGTGCGTTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTG 600 consensus_7172#1 TGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTG 585 ************************ *********************************** consensus_7172#0 GCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGCTCGGCGCCTC 660 consensus_7172#1 GCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGGCCTGGTCGCC 645 ************************************************* * * * * consensus_7172#0 GCACAACAGCCTCGACCCTTGCCGGACACTGGCCGGCGACGATGCGGACGACCGGTCGGT 720 consensus_7172#1 GCAGGACCGA-TGGATTGCGA--------------------------------------- 665 *** ** * * ** consensus_7172#0 GCTCGGCATCTCGAAGCAGCTGCTGATGGAGGACGTGCTGAATCACCTGAAAACGCAAAC 780 consensus_7172#1 ------------------------------------------------------------ consensus_7172#0 CAAATGGCAGCGCATCTACACCGAGTATCTGGACCAGCTAAAATTCCTCAAGGAGCGGGA 840 consensus_7172#1 ------------------------------------------------------------ consensus_7172#0 TGGCGGCGGCGGCGGCCGAGACAAACCACTGATGGAGTAGTGCATGGAGTGTAGCCGAGC 900 consensus_7172#1 ------------------------------------------------------------ consensus_7172#0 GTACAATAAAACTCTAAACTCTACGGTAAGCTTGTCTCACAAAAAAAAAAAAAAAAAAAA 960 consensus_7172#1 ------------------------------------------------------------ consensus_7172#0 AGGCCA 966 consensus_7172#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||