cluster # 7180

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Anopheles gambiae
cluster # 7180 cluster # 7180 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7180#0 length = 1064 sequences # 3

consensus_7180#1 length = 504 sequences # 2
consensus_7180#2 length = 488 sequences # 1

consensusID : consensus_7180#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1064
fasta sequence

                              [CCGCTAATACCCTGCTGCTGCTGCTGCTGCTGTTGTGCTGCTTTAACTTTGTTTTCAATACAAAATTTAATAATAATCATTTCCAGTACTTTATTAAGTGATAGCTCCCACTACCCGTCAAACCCGTTAAAACCGCGGGCATCGTAAAAATCTTAATGTTTAAAATCGTCACCGTTTGCAACGGCACAACTAACGCTATTCTTACATTTTTCTCTAACTGTTGTTGTACATGAATAAAACACACGCACACACAACATTCCATTAAGACCGCGGGAAGGAATGCACCTGTGTTGTGGAAAACTTTCCCGTGGAAATTCAGAATTGAAAACGCTTTAATACTACTTATATGAAATATATGATAAGAAAGGAAAATAAATCGAGCTATCGAAAACGTTCGCACAAAAAAAAAAAAAGAACCGGGCATAAACTCGTACTATAACTAAATAAAACGGGAATTGTAAGGGGGAAATTTAACCTACACACAACAAGTACACAACAACACACGAACAACACCACACGCCACAGCAAAATTCAAAGTTGGAATCACAATGATAGAACCAGAAAAAGACCAATCCGCTAGCCGTTGTCGTCCACCCGCGCCGTTCGCATGACGCGGGTTATTATCGTATGATAAGGTAGATGATAAAGTAGCAACAAAACCAGAAGCGATAGATTTTTTAAACGATATCGAACGAGTTTCCTCCAAAGAGACGGGTTTTTTTAGTGGTTAGCCGTTTTTACGGATACATTTATGGTACAGTTTTCCTCGGGCTTTGTTTACCCCTCACACTCCCCCTCCCCCATCCCATTTTCCTCGCTTTCCCGCGATCTAGAAAAAGCTAATCGGTAAGAACGGCTGTCAAGAAGTTAGCGCGAAATATAGACACATTTGTTAGGCTTTGCAAGGGCTGATAGACTTACTAGAGTAAAGGGAGGAAAAAGGGCGGTAGGGTGAAAGTAGTCAGCAATTAAAATGTAGAAAAGCAAAAGAACAGGAAACAGCTCGTCCCATCTTGTGGTCCCTTTTGTCCCCAACTCAGTCTCCTTATTGACAGTTTACCCTT]

[+] EMBL BM606668             [CCGCTAATACCCTGCTGCTGCTGCTGCTGCTGTTGTGCTGCTTTAACTTTGTTTTCAATACAAAATTTAATAATAATCATTTCCAGTACTTTATTAAGTGATAGCTCCCACTACCCGTCAAACCCGTTAAAACCGCGGGCATCGTAAAAATCTTAATGTTTAAAATCGTCACCGTTTGCAACGGCACAACTAACGCTATTCTTACATTTTTCTCTAACTGTTGTTGTACATGAATAAAACACACGCACACACAACATTCCATTAAGACCGCGGGAAGGAATGCACCTGTGTTGTGGAAAACTTTCCCGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX616936             [                                                                                                                                                                                                                            TTGTTGTACATGAATAAAACACACGCACACACAACATTCCATTAAGACCGCGGGAAGGAATGCACCTGTGTTGTGGCAAACTTTCCCGTGGAAATTCAGAATTGAAAACGCTTTAATACTACTTATATGAAATATATGATAAGAAAGGAAAATAAATCGAGCTATCGAAAACGTTCGCACAAAAAAAAAAAAAGAACCGGGCATAAACTCGTACTATAACTAAATAAAACGGGAATTGTAAGGGGGAAATTTAACCTACACACAACAAGTACACAACAACACACGAACAACACCACACGCCACAGCAAAATTCAAAGTTGGAATCACAATGATAGAACCAGAAAAAGACCAATCCGCTAGCCGTTGTCGTCCACCCGCGCCGTTCGCATGACGCGGGTTATTATCGTATGATAAGGTAGATGATAAAGTAGCAACAAAACCAGAAGCGATAGATTTTTTAAACGATATCGAACGAGTTTCCTCCAAAGAGACGGGTTTTTTTAGTGGTTAGCCGTTTTTACGGATACATTTATGGTACAGTTTTCCTCGGGCTTTGTTTACCCCTCACACTCCCCCTCCCCCATCCCATTTTCCTCGCTTTCC                                                                                                                                                                                                                                                 ]
[+] EMBL BX622725             [                                                                                                                                                                                                                                                                                                                                                                                                                                    GCATAAACTCGTACTATAACTAAATAAAACGGGAATTGTAAGGGGGAAATTTAACCTACACACAACAAGTACACAACAACACACGAACAACACCACACGCCACAGCAAAATTCAAAGTTGGAATCACAATGATAGAACCAGAAAAAGACCAATCCGCTAGCCGTTGTCGTCCACCCGCGCCGTTCGCATGACGCGGGTTATTATCGTATGATAAGGTAGATGATAAAGTAGCAACAAAACCAGAAGCGATAGATTTTTTAAACGATATCGAACGAGTTTCCTCCAAAGAGACGGGTTTTTTTAGTGGTTAGCCGTTTTTACGGATACATTTATGGTACAGTTTTCCTCGGGCTTTGTTTACCCCTCACACTCCCCCTCCCCCATCCCATTTTCCTCGCTTTCCCGCGATCTAGAAAAAGCTAATCGGTAAGAACGGCTGTCAAGAAGTTAGCGCGAAATATAGACACATTTGTTAGGCTTTGCAAGGGCTGATAGACTTACTAGAGTAAAGGGAGGAAAAAGGGCGGTAGGGTGAAAGTAGTCAGCAATTAAAATGTAGAAAAGCAAAAGAACAGGAAACAGCTCGTCCCATCTTGTGGTCCCTTTTGTCCCCAACTCAGTCTCCTTATTGACAGTTTACCCTT]




>consensus_7180#0
CCGCTAATACCCTGCTGCTGCTGCTGCTGCTGTTGTGCTGCTTTAACTTTGTTTTCAATA
CAAAATTTAATAATAATCATTTCCAGTACTTTATTAAGTGATAGCTCCCACTACCCGTCA
AACCCGTTAAAACCGCGGGCATCGTAAAAATCTTAATGTTTAAAATCGTCACCGTTTGCA
ACGGCACAACTAACGCTATTCTTACATTTTTCTCTAACTGTTGTTGTACATGAATAAAAC
ACACGCACACACAACATTCCATTAAGACCGCGGGAAGGAATGCACCTGTGTTGTGGAAAA
CTTTCCCGTGGAAATTCAGAATTGAAAACGCTTTAATACTACTTATATGAAATATATGAT
AAGAAAGGAAAATAAATCGAGCTATCGAAAACGTTCGCACAAAAAAAAAAAAAGAACCGG
GCATAAACTCGTACTATAACTAAATAAAACGGGAATTGTAAGGGGGAAATTTAACCTACA
CACAACAAGTACACAACAACACACGAACAACACCACACGCCACAGCAAAATTCAAAGTTG
GAATCACAATGATAGAACCAGAAAAAGACCAATCCGCTAGCCGTTGTCGTCCACCCGCGC
CGTTCGCATGACGCGGGTTATTATCGTATGATAAGGTAGATGATAAAGTAGCAACAAAAC
CAGAAGCGATAGATTTTTTAAACGATATCGAACGAGTTTCCTCCAAAGAGACGGGTTTTT
TTAGTGGTTAGCCGTTTTTACGGATACATTTATGGTACAGTTTTCCTCGGGCTTTGTTTA
CCCCTCACACTCCCCCTCCCCCATCCCATTTTCCTCGCTTTCCCGCGATCTAGAAAAAGC
TAATCGGTAAGAACGGCTGTCAAGAAGTTAGCGCGAAATATAGACACATTTGTTAGGCTT
TGCAAGGGCTGATAGACTTACTAGAGTAAAGGGAGGAAAAAGGGCGGTAGGGTGAAAGTA
GTCAGCAATTAAAATGTAGAAAAGCAAAAGAACAGGAAACAGCTCGTCCCATCTTGTGGT
CCCTTTTGTCCCCAACTCAGTCTCCTTATTGACAGTTTACCCTT

consensusID : consensus_7180#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 504
fasta sequence

                              [CATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATATACAATGACACACACACACACACACACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGCTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCTTTTGTCCCAACTCAGTCTCCTTATTGACAGTTTACCCTTACACAGTTTCTTGGAACGGTACCGGTTTTTCCTATGCGAGATCGATCCTCCTCTTATCAAGCTCGTTTTAGAGATATCATAGTTAGAACAGTGGTTTTTCCTCTCCAATAGAAAATCCCTTTAAGTAATGACTCCCAACCCAGTCCCATGCTTGTTAGCAATAACCGCCATAAACCACCACCACCACGTGGTTTGAAACCCTGAAAGTGATCACAATACAACGAGAAGCAAAACTCTGATCGTTATGTTTTTTTAATTGTTGCAAG]

[+] EMBL BX610615             [CATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATATACAATGACACACACACACACACACACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGCTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCTTTTGTCCCAACTCAGTCTCCTTATTGACAGTTTACCCTTACACAGTTTCTTGGAACGGTACCGGTTTTTCCTATGCGAGATCGATCCTCCTCTTATCAAGCTCGTTTTAGAGATATCATAGTTAGAACAGTGGTTTTTCCTCTCCAATAGAAAATCCCTTTAAGTAATGACTCCCAACCCAGTCCCATGCTTGTTAGCAATAACCGCCATAAACCACCACCACCACGTGGTTTGAAACCCTGAAAGTGATCACAATACAACGAGAAGCAAAACTCTGATCGTTATGTTTTTTTAATTGTTGCAAG]
[+] EMBL BX610616             [          CGTACACGCGTACACTAAACTACACCCACACGGATATACAATGACACACACACACACACACACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGCTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCTTTTGTCCCAACTCAGTCTCCTTATTGACAGTTTACCCTTACACAGTTTCTTGGAACGGTACCGGTTTTTCCTATGCGAGATCGATCCTCCTCTTATCAAGCTCGTTTTAGAGATATCATAGTTAGAACAGTGGTTTTTCCTCTCCAATAGAAAATCCCTTTAAGTAATGACTCCCAACCCAGTCCCATGCTTGTTAGCAATAACCGCCATAAACCACCACCACCACGTGGTTTGAAACCCTGAAAGTGATCACAATACAACGAGAAGCAAAACTCTGATC                         ]




>consensus_7180#1
CATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATATACAATGACACACA
CACACACACACACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTC
CCTGCAATCCTGCTCCTTGCTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCC
CACCATCAATATTCTCCCTTTTGTCCCAACTCAGTCTCCTTATTGACAGTTTACCCTTAC
ACAGTTTCTTGGAACGGTACCGGTTTTTCCTATGCGAGATCGATCCTCCTCTTATCAAGC
TCGTTTTAGAGATATCATAGTTAGAACAGTGGTTTTTCCTCTCCAATAGAAAATCCCTTT
AAGTAATGACTCCCAACCCAGTCCCATGCTTGTTAGCAATAACCGCCATAAACCACCACC
ACCACGTGGTTTGAAACCCTGAAAGTGATCACAATACAACGAGAAGCAAAACTCTGATCG
TTATGTTTTTTTAATTGTTGCAAG

consensusID : consensus_7180#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [TGCACAGGAGGAAGGAAAATAGAGCGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTTTGGGGAAAAGCAGAGCACAGGGAAAACCCACAATGAATCATATAAGATAATTATGGATATAAATATTTATAGAATCTCCCATAATCAGGCAGGTCCTACCGGGAGTTAGAGAAAGCTCATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATACACACTGACACACGCGCGCACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGTTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCGCTCTTAGCCCACCAACACAACTACACAGAACCAATCATTTTAAGGCGGTGACGTCATTGATGACCCGCGCAAACACACATACACACACACACATACACACACACATAC]

[+] EMBL BM584971             [TGCACAGGAGGAAGGAAAATAGAGCGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTTTGGGGAAAAGCAGAGCACAGGGAAAACCCACAATGAATCATATAAGATAATTATGGATATAAATATTTATAGAATCTCCCATAATCAGGCAGGTCCTACCGGGAGTTAGAGAAAGCTCATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATACACACTGACACACGCGCGCACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTTCCCTGCAATCCTGCTCCTTGTTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACCCCACCATCAATATTCTCCCGCTCTTAGCCCACCAACACAACTACACAGAACCAATCATTTTAAGGCGGTGACGTCATTGATGACCCGCGCAAACACACATACACACACACACATACACACACACATAC]




>consensus_7180#2
TGCACAGGAGGAAGGAAAATAGAGCGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAAGGTTTGGGGAAAAGCAGAGCACAGGGAAAACCCACAATGAATCATATAAGATAA
TTATGGATATAAATATTTATAGAATCTCCCATAATCAGGCAGGTCCTACCGGGAGTTAGA
GAAAGCTCATAATCATACGTACACGCGTACACTAAACTACACCCACACGGATACACACTG
ACACACGCGCGCACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTT
CCCTGCAATCCTGCTCCTTGTTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATACC
CCACCATCAATATTCTCCCGCTCTTAGCCCACCAACACAACTACACAGAACCAATCATTT
TAAGGCGGTGACGTCATTGATGACCCGCGCAAACACACATACACACACACACATACACAC
ACACATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7180#1      ------------------------------------------------------------
consensus_7180#2      ------------------------------------------------------------
consensus_7180#0      CCGCTAATACCCTGCTGCTGCTGCTGCTGCTGTTGTGCTGCTTTAACTTTGTTTTCAATA 60
                                                                                  

consensus_7180#1      ------------------------------------------------------------
consensus_7180#2      ------------------------------------------------------------
consensus_7180#0      CAAAATTTAATAATAATCATTTCCAGTACTTTATTAAGTGATAGCTCCCACTACCCGTCA 120
                                                                                  

consensus_7180#1      ------------------------------------------------------------
consensus_7180#2      ------------------------------------------------------------
consensus_7180#0      AACCCGTTAAAACCGCGGGCATCGTAAAAATCTTAATGTTTAAAATCGTCACCGTTTGCA 180
                                                                                  

consensus_7180#1      ------------------------------------------------------------
consensus_7180#2      --------------------------------------TGCACAGGAGGAAGGAAAATAG 22
consensus_7180#0      ACGGCACAACTAACGCTATTCTTACATTTTTCTCTAACTGTTGTTGTACATGAATAAAAC 240
                                                                                  

consensus_7180#1      ------------------------------------------------------------
consensus_7180#2      AGCGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTTTGGGGAAAAGCA 82
consensus_7180#0      ACACGCACACACAACATTCCATTAAGACCGCGGGAAGGAATGCACCTGTGTTGTGGAAAA 300
                                                                                  

consensus_7180#1      ------------------------------------------------------------
consensus_7180#2      GAGCACAGGGAAAACCCACAATGAATCATATAAGATAATTATGGATATAAATATTTATAG 142
consensus_7180#0      CTTTCCCGTGGAAATTCAGAATTGAAAACGCTTTAATACTACTTATATGAAATATATGAT 360
                                                                                  

consensus_7180#1      ---------------------------------------------------CATAATCAT 9
consensus_7180#2      AATCTCCCATAATCAGGCAGGTCCTACCGGGAGTT------AGAGAAAGCTCATAATCAT 196
consensus_7180#0      AAGAAAGGAAAATAAATCGAGCTATCGAAAACGTTCGCACAAAAAAAAAAAAAGAACCGG 420
                                                                          * ** *  

consensus_7180#1      ACGTACACGCGTAC----ACTAAACTACAC-----CCACACGGATATACAATGACACACA 60
consensus_7180#2      ACGTACACGCGTAC----ACTAAACTACAC-----CCACACGGATACACACTGACACACG 247
consensus_7180#0      GCATAAACTCGTACTATAACTAAATAAAACGGGAATTGTAAGGGGGAAATTTAACCTACA 480
                       * ** ** *****    ******  * **         * **    *   * **  ** 

consensus_7180#1      CACA-CACACACACACAACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTT 119
consensus_7180#2      CGCG-CACACA------ACCACTGGTGAAAGACTACTGACTACTTCTCTTTACCACCCTT 300
consensus_7180#0      CACAACAAGTACACAACAACACACGAACAACACCACACGCCACAGCAAAATTCAAAGTTG 540
                      * *  **   *      * ***  *   ** ** **   * **  *    * * *   * 

consensus_7180#1      CCCT-GCAATCCT-GCTCCTTGCTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATA 177
consensus_7180#2      CCCT-GCAATCCT-GCTCCTTGTTGAGGCTATCCTTACACTTGTTTCAATATTCTCTATA 358
consensus_7180#0      GAATCACAATGATAGAACCAGAAAAAGACCAATCCGCTAGCCGTTGTCGTCCACCCGCGC 600
                         *  ****  * *  **      ** * *  *    *   ***    *   * *    

consensus_7180#1      CCCCACCAT--CAATATTCTCCCTTTTGTCCCAACTCAGTCTCCTTATTGACAGTTTACC 235
consensus_7180#2      CCCCACCAT--CAATATTCTCCCGCT--------CTTAGCCCACCAAC--ACAACTACAC 406
consensus_7180#0      CGTTCGCATGACGCGGGTTATTATCGTATGATAAGGTAGATGATAAAGTAGCAACAAAAC 660
                      *     ***  *     *                   **       *    **      *

consensus_7180#1      CTTACAC---AGTTTCTTGGAACGGTACCGGTTTT--TCCTAT--GCGAGATCGATCCTC 288
consensus_7180#2      AGAACCA---ATCATTTTAAGGCGGTGACGTCATTGATGACCC--GCGCAAACACACATA 461
consensus_7180#0      CAGAAGCGATAGATTTTTTAAACGATATCGAACGAGTTTCCTCCAAAGAGACGGGTTTTT 720
                         *      *   * **    ** *  **       *         *  *       * 

consensus_7180#1      CTCTTATCAAGCTCGTTTTAGAGATATCATAGTTAGAACAGTGGTTTT------TCCTCT 342
consensus_7180#2      CACACACACACATACACACACACATAC--------------------------------- 488
consensus_7180#0      TTAGTGGTTAGCCGTTTTTACGGATAC-ATTTATGGTACAGTTTTCCTCGGGCTTTGTTT 779
                               *         *   ***                                  

consensus_7180#1      CCAATAGAAAATCCCTTTAAGTAATGACTCCCAACCCAGTCCCATGCTTGTTAGCAATAA 402
consensus_7180#2      ------------------------------------------------------------
consensus_7180#0      ACCCCTCACACTCCCCCTCCCCCATCCCATTTTCCTCGCTTTCCCGCGATCTAGAAAAAG 839
                                                                                  

consensus_7180#1      CCG-CCATAAACCACCACCACCACGTGGTTTGAAACCCTGAAAGTGATCACAATACAACG 461
consensus_7180#2      ------------------------------------------------------------
consensus_7180#0      CTAATCGGTAAGAACGGCTGTCAAGAAGTT---AGCGCGAAATATAGACACATTTGTTAG 896
                                                                                  

consensus_7180#1      AGAAGCAAAACTCTGATCGTTATGTTTTTTTAATTGTTGCAAG----------------- 504
consensus_7180#2      ------------------------------------------------------------
consensus_7180#0      GCTTTGCAAGGGCTGATAGACTTACTAGAGTAAAGGGAGGAAAAAGGGCGGTAGGGTGAA 956
                                                                                  

consensus_7180#1      ------------------------------------------------------------
consensus_7180#2      ------------------------------------------------------------
consensus_7180#0      AGTAGTCAGCAATTAAAATGTAGAAAAGCAAAAGAACAGGAAACAGCTCGTCCCATCTTG 1016
                                                                                  

consensus_7180#1      ------------------------------------------------
consensus_7180#2      ------------------------------------------------
consensus_7180#0      TGGTCCCTTTTGTCCCCAACTCAGTCTCCTTATTGACAGTTTACCCTT 1064