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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1222 fasta sequence
[CCGCGGACGCGTGGGCGCGGGCACGATTATGTCCCTGCGTGAAAGTTAAGAAAGAGGAACAGGTGCGTACTACTTTGACCTCATGTTTTTTTTTTGTATTCTTCAATTTTTTATCTTAGCCTATAACACTTTCAAGTTAGTTGGACTTGCCTTTCTTCGTCTACGCTCCTTTGAACGCGTTTGACAACACCCTGCTATACGTG--AGTGTGTGTGTGTGTGATTTTTTTTGCAATCAAAAGACACAAAGCCACTGAAAGCCAGAATTATTTCGAATTGTTCTTTG-AAAAAAAAAAAAAAGAAAAGATTAGGGACAGGGTTCTAGCTTTGTAAGGTTTATACTATCGGCAAATGTTTGGCGTAACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCATCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCACAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAGCTCAGTCGCACTGGGCACGATGCACATTCGCTCTTACACGTGTGTTGTTGTAACAGGCTACCCTGCTCTTGAACGAAGCTACCATATGGGAGAAAGTAGTCTGACATAATAAGGTATACTATACTCAAAGACGAATGCCACGTCGAATGGATACTTAGGTAGAACAGAATTGAAGCAATCGGTAAAAGACGCATGCACCTAACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGCATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGCAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATCATGAAGAGCGATGTAGACTTACAAAGTAGNNTAATTAATATAATCTCCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCCTGCTGAAGCAATTTTTTGTTCTGTAAAACCCAAACCGCAACCAATNCTATTGAAAGTGAGGNTCGGTGGCNAACACNGNAACCCCCGGACCANCANGNTAN]
[+] EMBL BM622486 [CCGCGGACGCGTGGGCGCGGGCACGATTATGTCCCTGCGTGAAAGTTAAGAAAGAGGAACAGGTGCGTACTACTTTGACCTCATGTTTTTTTTTTGTATTCTTCAATTTTTTATCTTAGCCTATAACACTTTCAAGTTAGTTGGACTTGCCTTTCTTCGTCTACGCTCCTTTGAACGCGTTTGACAACACCCTGCTATACGTGAAAGTGTGTGTGTGTGTGATTTTTTTTGCAATCAAAAGACACAAAGCCACTGAAAGCCAGAATTATTTCGAATTGTTCTTTG AAAAAAAAAAAAAAGAAAAGATTAGGGACAGGGTTCTAGCTTTGTAAGGTTTATACTATCGGCAAATGTTTGGCGTAACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCATCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCACAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAGCTCAGTCGCACTGGGCACGATGCACATTCGCTCTTACACGTGTGTTGTTGTAACAGGCTACCCTGCTCTTGAACGAAGCTACCATATGGGAGAAAGTAGTCTGACATAATAAG ]
[+] EMBL BX625404 [ ACTACTTTGATNTCCTGTTTTTTTTTTGTATTCTTCAATTTTTTATCTTAGCCTATAACACTTTCAAGTTAGTTGGACTTGCCTTTCTTCGTCTACGCTCCTTTGAACGCGTTTGACAACACCCTGCTATACGTG TGTGTGTGTGTGTGTGATTTTTTTTGCAATCAAAAGACACAAAGCCACTGAAAGCCAGAATTATTTCGAATTGTTCTTTGAAAAAAAAAAAAAAANAAAAGATTAGGGACAGGGTTCTAGCTTTGTAAGGTTTATACTATCGGCAAATGTTTGGCGTAACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCATCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCACAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAGCTCAGTCGCACTGG ]
[+] EMBL BM599721 [ ccgGGTTTATACTATCGGCAAATGTTTGGCGTAACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCATCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCACAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAGCTCAGTCGCACTGGGCACGATGCACATTCGCTCTTACACGTGTGTTGTTGTAGCAGGCTACCCTGCTCTTGAACGAAGCTACCATAT GGAGAAAGTAGTCTGACATAATAAGGTATACTATACTCAAAGACGAATGCCACGTCGAATGGATACTTAGGTAGAACAGAATTGAAGCAATCGGTAAAAGACGCATGCACCTAACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGCATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGCAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATCATGAAGAGCGATGTAGACTTACAAAGT ]
[+] EMBL CF541749 [ TACTATACTCAAAGACGAATGCCACGTCGAATGGATACTTAGGTAGAACAGAATTGAAGCAATCGGTAAAAGACGCATGCACCTAACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGTATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGG AAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGNNTAATTAATATAATCTCCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCCTGCTGAAGCAATTTTTTGTTCTGTAAAACCCAAACCGCAACCAATNCTATTGAAAGTGAGGNTCGGTGGCNAACACNGNAACCCCCGGACCANCANGNTAN]
consensusID : consensus_7186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[CAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAATTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCTGCTGAAGCAATTTTTGTTCTGTAAAACCAAACGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCGGACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAAGCGAAATAAACAAGAAAATTAATAAAACATATATATATACACACTTATATAGATATATATTATCGTACCACGGTGTTTGTACTTGATTTGCAAGGATTTAGGCATTAGATGAGCAAAAATAAGCAAAACAAAAAACACTCCCCAACAACAAGTGTATGTCATTAGGCAGCAGCGAAAAGGTAGGAAGAGTGGCGAAAAATGCCATAGAGTTTACAAAAAAATACATTAACACACGCATACAGTTACACCAGGATCCAGACCCCGAGGAGCGATAGAGAGCACGCACGCAAACCTGGTTTGAAGCAAAAGCAGACAACAACAACAACAACAACCAAAACTGTGATTTGAAAAAAAAGATGCTGTATTAAA]
[+] EMBL BX613116 [CAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAATTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCTGCTGAAGCAATTTTTGTTCTGTAAAACCAAACGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCGGACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAAGCGAAATAAACAAGAAAATTAATAAAACATATATATATACACACTTATATAGATATATATTATCGTACCACGGTGTTTGTACTTGATTTGCAAGGATTTAGGCATTAGATGAGCAAAAATAAGCAAAACAAAAAACACTCCCCAACAACAAGTGTATGTCATTAGGCAGCAGCGAAAAGGTAGGAAGAGTGGCGAAAAATGCCATAGAGTTTACAAAAAAATACATTAACACACGCATACAGTTACACCAGGATCCAGACCCCGAGGAGCGATAGAGAGCACGCACGCAAACCTGGTTTGAAGCAAAAGCAGACAACAACAACAACAACAACCAAAACTGTGATTTGAAAAAAAAGATGCTGTATTAAA]
consensusID : consensus_7186#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[ACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGTATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAATTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCTGCTGAAGCAATTTTGGTTCTGTAAAACCAAACGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCGGACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAGGCGAAATAAACAAGAAAATTAATAAAACATATATATATATACACACACAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AF457563 [ACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCAGCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCACCTAGACTCTCCCACTTAGGTATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAGGCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAATTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCTGCTGAAGCAATTTTGGTTCTGTAAAACCAAACGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCGGACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAGGCGAAATAAACAAGAAAATTAATAAAACATATATATATATACACACACAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7186#0 CCGCGGACGCGTGGGCGCGGGCACGATTATGTCCCTGCGTGAAAGTTAAGAAAGAGGAAC 60
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 ------------------------------------------------------------
consensus_7186#0 AGGTGCGTACTACTTTGACCTCATGTTTTTTTTTTGTATTCTTCAATTTTTTATCTTAGC 120
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 ------------------------------------------------------------
consensus_7186#0 CTATAACACTTTCAAGTTAGTTGGACTTGCCTTTCTTCGTCTACGCTCCTTTGAACGCGT 180
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 ------------------------------------------------------------
consensus_7186#0 TTGACAACACCCTGCTATACGTGAGTGTGTGTGTGTGTGATTTTTTTTGCAATCAAAAGA 240
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 ------------------------------------------------------------
consensus_7186#0 CACAAAGCCACTGAAAGCCAGAATTATTTCGAATTGTTCTTTGAAAAAAAAAAAAAAGAA 300
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 ------------------------------------------------------------
consensus_7186#0 AAGATTAGGGACAGGGTTCTAGCTTTGTAAGGTTTATACTATCGGCAAATGTTTGGCGTA 360
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 ------------------------------------------------------------
consensus_7186#0 ACAAACGAAAAAAGGGAAACAGTGTATGAAAATAAACATCAACCACGCAGGAAGGCTTCA 420
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 ---------------------------------------------CAAAATAAGCCTTT- 14
consensus_7186#0 TCGCGTAGATGAGTAGTAGCTGAATGCAAAAGGTAAACCCGCAATGCACTAAGGCGCCCA 480
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 ---CGAAAATGGTGGATAGTTATGATTGGGAGAATAAGCGGGAAGAGAGTAAGAGAGACA 71
consensus_7186#0 CAGTGTGTGTGTGTGCGTGTGTGTGGGTGTGTAAGCGTGTCAAACTTGCGCACTTCGAAG 540
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 GAGAACGAGAAGATGAGAGAGCATATAATGAAGAGCGATGTAGACTTACAAAGTAGTTAA 131
consensus_7186#0 CTCAGTCGCACTGGGCACGATGCACATTCGCTCTTACACGTGTGTTGTTGTAACAGGCTA 600
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 TTAATATAATCTCGTTACTAAATGGGTTCGATCGATCATCAGAAGAAGAAGAAGAAAAAA 191
consensus_7186#0 CCCTGCTCTTGAACGAAGCTACCATATGGGAGAAAGTAGTCTGACATAATAAGGTATACT 660
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 CACT---------CAAAACC----TGCTGAAGCAATTTTTGTTCTGTAAAACCAAACGCA 238
consensus_7186#0 ATACTCAAAGACGAATGCCACGTCGAATGGATACTTAGGTAGAACAGAATTGAAGCAATC 720
consensus_7186#2 ------------------------------------------------------------
consensus_7186#1 ACAATCTATGAAGTGAGTCGTGCAAAATG---ACCCGGACACAGTATAACAGATTAGAAA 295
consensus_7186#0 GGTAAAAGACGCATGCACCTAACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCA 780
consensus_7186#2 ---------------------ACCCTTTTTACAGTAGCGGTACTACTATTAGCAGCAGCA 39
consensus_7186#1 GAGAGAGGAGATATAAAGCAAGACAAACGGACA--AGCGAAATAAACAAGAAAATTAATA 353
* *** **** * * * * * * *
consensus_7186#0 GCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCAC-C 839
consensus_7186#2 GCACTACTACTTCTACTACCACCGGCATATTCAACTACTCTCACACCGCCAGCACCAC-C 98
consensus_7186#1 AAACATATATATATACA--CACTTATATAGATATATATTATCGTACCACGGTGTTTGTAC 411
** ** * *** *** *** * ** * ** *** * *
consensus_7186#0 TAGACTCTCCC--ACTTAGGCATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAG 897
consensus_7186#2 TAGACTCTCCC--ACTTAGGTATTACTATCGGTAGGATTTAGAATAAGGCGAGTGTTCAG 156
consensus_7186#1 TTGATTTGCAAGGATTTAGGCATTAG-ATGAGCAAAAATAAG--CAAAACAAA-----AA 463
* ** * * * ***** **** ** * * * * ** ** * * *
consensus_7186#0 GCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGA 957
consensus_7186#2 GCATTCGGAGAAGTAAAGCAAAATAAGCCTTTCGAAAATGGTGGATAGTTATGATTGGGA 216
consensus_7186#1 ACACTCCCCAACAACAAGTG---TATGTCATTAGGCAGCAGCGAAAAGGTA-----GGAA 515
** ** * *** ** * * ** * * * * * ** ** ** *
consensus_7186#0 GAATAAGCGGGCAAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATCATG 1017
consensus_7186#2 GAATAAGCGGG-AAGAGAGTAAGAGAGACAGAGAACGAGAAGATGAGAGAGCATATAATG 275
consensus_7186#1 GAGTG-GCG---AAAAATGCCATAGAGTTT----ACAAAAAAATACATTAACACA-CGCA 566
** * *** ** * * * **** ** * ** ** * ** *
consensus_7186#0 AAGAGCGATGTAGACTTACAAAGTAGNNTAATTAATATA-ATCTCCGTTACTAAATGGGT 1076
consensus_7186#2 AAGAGCGATGTAGACTTACAAAGTAGTT-AATTAATATA-ATCTC-GTTACTAAATGGGT 332
consensus_7186#1 TACAGTTACACCAGGATCCAGACCCCGAGGAGCGATAGAGAGCACGCACGCAAACCTGGT 626
* ** * * ** * * *** * * * * * ** ***
consensus_7186#0 TCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACCCTG--CTGAAGCAATT 1134
consensus_7186#2 TCGATCGATCATCAGAAGAAGAAGAAGAAAAAACACTCAAAACC-TG--CTGAAGCAATT 389
consensus_7186#1 TTGAAGCAAAAGCAGACAACAACAAC--AACAACAACCAAAACTGTGATTTGAAAAAAAA 684
* ** * * **** * * * ** **** ****** ** **** **
consensus_7186#0 TTTTGTTCTGTAAAACCCAAACCGCAACCAATNCTATTGAAAGTGAGGNTCGGTGGCNAA 1194
consensus_7186#2 TTG-GTTCTGTAAAACCAAA--CGCAACAATCTATGAAGTGAGTCGTGCAAAATGACCCG 446
consensus_7186#1 GAT-GCTGTATTAAA--------------------------------------------- 698
* * * * ***
consensus_7186#0 CACNGNAACCCCCGGACCANCANGNTAN-------------------------------- 1222
consensus_7186#2 GACACAGTATAACAGATTAGAAAGAGAGAGGAGATATAAAGCAAGACAAACGGACAGGCG 506
consensus_7186#1 ------------------------------------------------------------
consensus_7186#0 ------------------------------------------------------------
consensus_7186#2 AAATAAACAAGAAAATTAATAAAACATATATATATATACACACACAAAAAAAAAAAAAAA 566
consensus_7186#1 ------------------------------------------------------------
consensus_7186#0 -----
consensus_7186#2 AAAAA 571
consensus_7186#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||