These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 969 fasta sequence [ATGTGCCTTTTTTTTTTTTTTTTTTTAGGAAAATAAATCCGAACCGCATGCCTCATGCCTTTATTGCCTTGCGCAGCTCGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCG-AACAGCTTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTACCCCCTG-TCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGCGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGATAGCTATGGTGCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTGGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCGGTAGAGA-TCGCGCAGCT-G-CTCCCAAGCGTTCGCCGGGATCCGGACGAGCGTGTCGTTCTGCATTTCTGATTTGTTTGAGGCGTAGGCAACAGTTCTCGAGGAATCCGCACCTTTAG] [-] EMBL CNS09EXA [ATGTGCCTTTTTTTTTTTTTTTTTTTAGGAAAATAAATCCGAACCGCATGCCTCATGCCTTTATTGCCTTGCGCAGCTCGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCG AACAAGTTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTACCCCCTG TCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGCGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGATAGCTATGGTGCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTGGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCGGTAGAGA TCGCGCAGCT G CT CCAAGCGTTCGCCGGGATCCGGACGAGCGTGTCGTTCTG ] [-] EMBL CNS098HJ [ TTTTTTTTTTTAGGAAAATAAATCCGAACCGCATGCCTCATGCCTTAATTGCCTTGCGCAGCTCGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCGAAACAG TTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTACCCCCTG TCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGTGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGATAGCTATGGTGCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTGGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCGGTAGAGATTCGCGCAGCT G CTCCCAAGCGTTCGCCGGGATCCGGACGAGCGTGTCGTTCT ] [+] EMBL CNS098HK [ CGAACCGCATGCCTCATGCCTTTATTGCCTTGCGCCTC CGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCG AACAGCTTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTA CCCCTGCTCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGTGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGA CAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGAAAGCTATGGTGCCAGTTGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTTGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTTCTGCCGGTAGAGA TCGCGCA CT GACTCCCAAGCGTTCGCCGGG ] [+] EMBL CNS09EXB [ CCGCATGCCTCATGCCTTTATTGCCTTGCGCCG TCGCAACC TCGAACGTACCTTTCATGTTCTTCAGCCAGCTCGCCTCGCCGACCGCCCGGAACCCGAGCTTCTCG AACAGCTTGCGCGAGGCCACGTTGGTGCGCCGTACGCTCGCGTACGTACTGTA CCCCTGCCCCGCTAGCCGGCGGGCGATCGCCTTTATGACGAGCGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAAACCCACCGGCAGAACGTATCGAAACCGGTGAGCCACCTGCTGCGGCATGTTAAAAATGAGATCGGCACTTTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGAAAGCTATGGTGCCAGTTGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTTCTGTCAAGCGTGTTCATAAACACATCCGTATGAACTATAATTATGTAGGTTCCTGTCTGTCGCCAGTGGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTTATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTTCTGCCGGTAGAAA TCGCGCA CTGG CTCCCAAGCGTTCGCCGGGATCCGGACGAGCGTTTTGTTCTGCATTTCTGATTTGTTTGAGGCGTAGGCAACAGTTCTCGAGGAATCCGCACCTTTAG] [-] EMBL BM589350 [ CAGCAGCCCGAGCGCACCGTTCTGTGTCCGGATGCACCAGGCCAACGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCGAGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGGTGCCGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGATGCGCTGGAGCGATAGACCCACCGGCAGATCGTATCGAAACCGGTGCGCCACCTGCTGCGGCAGGTGATAGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACGGTGGCACGGTACAGGCACATGTTCATCAGATAGCTGTGGTGCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTTGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCGGTAGAGA TCGCGCAGCT G CTCCCAAGCGTTCGCCGGGATCCGGACGAGCGTGTCGTTCTGCATTGCTGATTTGcgg ] consensusID : consensus_7188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [GTACTCGGGTGCCTGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGNCGNCATAGTGGGCCGGAATTGCGCTGGACGCGATAGACCCACCCGGCAGTATCGTATCGAAACCGGTGCGCCACCTGCTGCGCGCAGCGTGATACGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACCGGTGGCACGGTACAGGCACATGTTCATCAGATACNCTGTGGTNCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTTCGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCCGGTAGAGATCGCGCAGCTGCTCCCAAGCGTTCCCCCGGNATCCGGACGAGCGTGTCGTTCTGCATTGTAGACCTCGTGCCGATTC] [-] EMBL BX469557 [GTACTCGGGTGCCTGACCGATTTGTTCAGCCACTGGTTGTAGATGAAGNCGNCATAGTGGGCCGGAATTGCGCTGGACGCGATAGACCCACCCGGCAGTATCGTATCGAAACCGGTGCGCCACCTGCTGCGCGCAGCGTGATACGATGAGATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACCGGTGGCACGGTACAGGCACATGTTCATCAGATACNCTGTGGTNCCAGTCGAGCAGCAGCAGCATACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTATAATTATGTAGGTTCCTGTCTGTCGCCAGTTCGCCGTTCAGGCTGTAGACAAGAAGCGTTGCACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAATCTCGTGCCGTGGCCAGTCCTGCCCGGTAGAGATCGCGCAGCTGCTCCCAAGCGTTCCCCCGGNATCCGGACGAGCGTGTCGTTCTGCATTGTAGACCTCGTGCCGATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7188#0 ATGTGCCTTTTTTTTTTTTTTTTTTTAGGAAAATAAATCCGAACCGCATGCCTCATGCCT 60 consensus_7188#1 ------------------------------------------------------------ consensus_7188#0 TTATTGCCTTGCGCAGCTCGCAACCATCGAACGTACCTTTCATGTTCTTCAGCCAGCTCG 120 consensus_7188#1 ------------------------------------------------------------ consensus_7188#0 CCTCGCCGACCGCCCGGAACCCGAGCTTCTCGAACAGCTTGCGCGAGGCCACGTTGGTGC 180 consensus_7188#1 ------------------------------------------------------------ consensus_7188#0 GCCGTACGCTCGCGTACGTACTGTACCCCCTGTCCGCTAGCCGGCGGGCGATCGCCTTTA 240 consensus_7188#1 ------------------------------------------------------------ consensus_7188#0 TGACGAGCGAACCGTACCCCTTGCGCTGGGCCACCACACCCAGCAGCCCGAGCGCACCGT 300 consensus_7188#1 ------------------------------------------------------------ consensus_7188#0 TCTGTGTCCGGATGCACCAGGCCAGCGGTTCCCGGACGCCCTCGCAGAACAGGCCCATCG 360 consensus_7188#1 ------------------------------------------------------------ consensus_7188#0 AGACGTTCCAGCGGAGCAGCCGCTCGATGAAGTACTCGG-TGCC-GACCGATTTGTTCAG 418 consensus_7188#1 -------------------------------GTACTCGGGTGCCTGACCGATTTGTTCAG 29 ******** **** *************** consensus_7188#0 CCACTGGTTGTAGATGAAGGCGGCATAGTGGGGCGGGAT-GCGCTGGA-GCGATAGACCC 476 consensus_7188#1 CCACTGGTTGTAGATGAAGNCGNCATAGTGGGCCGGAATTGCGCTGGACGCGATAGACCC 89 ******************* ** ********* *** ** ******** *********** consensus_7188#0 ACC-GGCAG-ATCGTATCGAAACCGGTGAGCCACCTGCTGCG-GCA-TGTGATA-GATGA 531 consensus_7188#1 ACCCGGCAGTATCGTATCGAAACCGGTGCGCCACCTGCTGCGCGCAGCGTGATACGATGA 149 *** ***** ****************** ************* *** ****** ***** consensus_7188#0 GATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCAC-GGTG 590 consensus_7188#1 GATCGGCACTGTCGAACGCAATCTCGAGCCGATGCAACCGATACACCTCCAGCACCGGTG 209 ******************************************************* **** consensus_7188#0 GCACGGTACAGGCACATGTTCATCAGATA-GCTATGGTGCCAGTCGAGCAGCAGCAGCAT 649 consensus_7188#1 GCACGGTACAGGCACATGTTCATCAGATACNCTGTGGTNCCAGTCGAGCAGCAGCAGCAT 269 ***************************** ** **** ********************* consensus_7188#0 ACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTAT 709 consensus_7188#1 ACGCTTCAGCGTATCGCCCGTACTGTCAAGCGTGTACATAAACACATCCGTATGATCTAT 329 ************************************************************ consensus_7188#0 AATTATGTAGGTTCCTGTCTGTCGCCAGTG-GCCGTTCAGGCTGTAGACAAGAAGCGTTG 768 consensus_7188#1 AATTATGTAGGTTCCTGTCTGTCGCCAGTTCGCCGTTCAGGCTGTAGACAAGAAGCGTTG 389 ***************************** ***************************** consensus_7188#0 CACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAA 828 consensus_7188#1 CACTGATCTGCGGATCGCGCTCGATCCACCGGATGTAGTTCTGCACATTGTTGTAGGCAA 449 ************************************************************ consensus_7188#0 TCTCGTGCCGTGGCCAGTCCTGCC-GGTAGAGATCGCGCAGCTGCTCCCAAGCGTTCGCC 887 consensus_7188#1 TCTCGTGCCGTGGCCAGTCCTGCCCGGTAGAGATCGCGCAGCTGCTCCCAAGCGTTCCCC 509 ************************ ******************************** ** consensus_7188#0 -GGGATCCGGACGAGCGTGTCGTTCTGCATTTCTGATTTGTTTGAGGCGTAGGCAACAGT 946 consensus_7188#1 CGGNATCCGGACGAGCGTGTCGTTCTGCATTGTAGACCTCGTGCCGATTC---------- 559 ** *************************** ** * * * consensus_7188#0 TCTCGAGGAATCCGCACCTTTAG 969 consensus_7188#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||