These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 804 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTG-AGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAACCGTATCGCGCGGAGTGTGAACCGATTCTAAAGAACTGCAGCACCCCCGCTCGAAGAACACACACACACACGATGTATTTCTACAAAC] [+] EMBL BM608832 [CCGCCCACGCGTCCGCCCACGCGTCCGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTG AGACGGGGTGTGCATTGTTT ] [+] EMBL BM584984 [ ccgCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTG AGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAACCGTATCGCGCGGAGTGTGAACCGATTCTAAAGAACTGCAGCACCCCCGCTCGAAGAACACAC ] [+] EMBL BM655076 [ ccgGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTGAAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAACCGTATCGCGCGGAGTGTGAACCGATTCTAAAGAACTGCAGCACCCCCGCTCGAAGAACACACACACACACGATGTATTTCTACAAAC] consensusID : consensus_7190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGCCCACGCGTCCGGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTGAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAA] [+] EMBL BM588745 [CCGCCCACGCGTCCGGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTGAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAA] consensusID : consensus_7190#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 538 fasta sequence [CCGGTCAGAAATCATACGTAGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGGTTGCCATC] [+] EMBL BM585899 [CCGGTCAGAAATCATACGTAGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGGTTGCCATC] [+] EMBL BM583698 [ ccgGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7190#0 CCGCCCACGCGTCCGCCCACGCGTCCGAAACCGTTTCGCAGTTCGC-CAGACAGGACGAG 59 consensus_7190#1 --------------------------------------CCGCCCACGCGTCCGGGACGAG 22 consensus_7190#2 ------CCGGTCAGAAATCATACGTAGAAACCGTTTCGCAGTTCGC-CAGACAGGACGAG 53 * * * * * * ******* consensus_7190#0 AGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGT 119 consensus_7190#1 AGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGT 82 consensus_7190#2 AGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGT 113 ************************************************************ consensus_7190#0 ATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGC 179 consensus_7190#1 ATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGC 142 consensus_7190#2 ATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGC 173 ************************************************************ consensus_7190#0 CCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCG 239 consensus_7190#1 CCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCG 202 consensus_7190#2 CCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCG 233 ************************************************************ consensus_7190#0 TCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTC 299 consensus_7190#1 TCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTC 262 consensus_7190#2 TCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTC 293 ************************************************************ consensus_7190#0 TTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTG 359 consensus_7190#1 TTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTG 322 consensus_7190#2 TTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTG 353 ************************************************************ consensus_7190#0 GTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTG 419 consensus_7190#1 GTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTG 382 consensus_7190#2 GTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTG 413 ************************************************************ consensus_7190#0 ATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGA 479 consensus_7190#1 ATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGA 442 consensus_7190#2 ATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGA 473 ************************************************************ consensus_7190#0 GGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACG-TTG 538 consensus_7190#1 GGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACG-TTG 501 consensus_7190#2 GGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGGTTG 533 ******************************************************** *** consensus_7190#0 CCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTG 598 consensus_7190#1 CCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTG 561 consensus_7190#2 CCATC------------------------------------------------------- 538 ***** consensus_7190#0 GCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACC 658 consensus_7190#1 GCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACC 621 consensus_7190#2 ------------------------------------------------------------ consensus_7190#0 GTTCCTGCCGTCTGAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAACC 718 consensus_7190#1 GTTCCTGCCGTCTGAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAA-- 679 consensus_7190#2 ------------------------------------------------------------ consensus_7190#0 GTATCGCGCGGAGTGTGAACCGATTCTAAAGAACTGCAGCACCCCCGCTCGAAGAACACA 778 consensus_7190#1 ------------------------------------------------------------ consensus_7190#2 ------------------------------------------------------------ consensus_7190#0 CACACACACGATGTATTTCTACAAAC 804 consensus_7190#1 -------------------------- consensus_7190#2 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||