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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence
[CCGCCCACGCGTCCGCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCTCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGTGGCGGGCTCGTACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACTTGTGGGGTGAAGTCGGTGAAGACGGGCAACCGTGGTACTGGGCGGCCTGTACCGCCCTGTCCTACTTTCTACATGGTGTCCCGCCTGGGGGGGGCTACGTGTTCATCATCAATCTGATCCCGCTGCACGTGTTCGTGCTGCTGATGATGGGGCGCTACTCGCCCCGCCTCTTCA]
[+] EMBL BM595496 [CCGCCCACGCGTCCGCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCTCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGTGGCGGGCTCGTACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACTTGTGGGGTGAAGTCGGTGAAGACGGGCAACCGTGGTACTGGGCGGCCTGTACCGCCCTGTCCTACTTTCTACATGGTGTCCCGCCTGGGGGGGGCTACGTGTTCATCATCAATCTGATCCCGCTGCACGT ]
[+] EMBL BM638349 [ ccgGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGTGGCGGGCTCGTACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACCTGT GGGTGAAGTCGGTGAAGACGGGC AGCGT GTACTGGGCGGCCTGTACCGCCCTGTCCTAC TTCTACATGGTGT CCGCCT GGGGTGGCTACGTGTTCATCATCAATCTGATCCCGCTGCACGTGTTCGTGCTGCTGATGATGGGGCGCTACTCGCCCCGCCTCTTCA]
consensusID : consensus_7196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence
[CCGCCCACGCGTCCGCACGAACAAGATTTGCTGGACTCGGTGGTGGCGTTAATTGTTTCCCCGGTGTTTTCTCCGTTCGGTTCCGTGGACAATCCGCGGTCTGGTGTAAAATGCCTGTGTAACAACCTGCCGCTCGGCAACCTGCATTAGAAGTACTGCAAAACGGGTGCCTCGGTAAACGGGCCAAACGCGGAATCGGTCTTTTTGTCGGCTTTTCGTTCGCTTCTTACATTTTCCTCCTCCCCCCCGGGTTTTGCTGGACACGGGGTGCGTGTGTGTGTGTAGGTGTGCTTAATACGGTGACGTGAAAAAGCAACAATCTTCCGGAAACGGAACCTTCCCAGTTCCCCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCGCACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGG]
[+] EMBL BM655937 [CCGCCCACGCGTCCGCACGAACAAGATTTGCTGGACTCGGTGGTGGCGTTAATTGTTTCCCCGGTGTTTTCTCCGTTCGGTTCCGTGGACAATCCGCGGTCTGGTGTAAAATGCCTGTGTAACAACCTGCCGCTCGGCAACCTGCATTAGAAGTACTGCAAAACGGGTGCCTCGGTAAACGGGCCAAACGCGGAATCGGTCTTTTTGTCGGCTTTTCGTTCGCTTCTTACATTTTCCTCCTCCCCCCCGGGTTTTGCTGGACACGGGGTGCGTGTGTGTGTGTAGGTGTGCTTAATACGGTGACGTGAAAAAGCAACAATCTTCCGGAAACGGAACCTTCCCAGTTCCCCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCGCACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGG]
[+] EMBL BM611666 [ ccGATTTGCTGGACTCGGTGGTGGCGTTAATTGTTTCCCCGGTGTTTTCTCCGTTCGGTTCCGTGGACAATCCGCGGTCTGGTGTAAAATGCCTGTGTAACAACCTGCCGCTCGGCAACCTGCATTAGAAGTACTGCAACACGGGTGCCTCGGTAAACGGGCCAAACGCGGAATCGGTCTTTTTGTCGGCTTTTCGTTCGCTTCTTACATCTTCCTCCTCCTCCCCGGGTTTTGCTGGACACGGGGTGCGTGTGTGTGTGTAGGTGTGCTTAATACGGTGACGTGAAAAAGCAACAATCTTCCGGAAACGGAACCTTCCCAGTTCCCCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAG ]
consensusID : consensus_7196#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[CCGCGGACGCGTGGGCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAAGCTGTGGTCGGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACTCAGCCGCCTCGGTGGCGGGCTCG]
[+] EMBL BM576290 [CCGCGGACGCGTGGGCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCCACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGCATCCACTGGCTGCTGCACACGCTCAACATTCCGGTGCACATCCGCGACATCTGGCGTGTTTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAAGCTGTGGTCGGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACTCAGCCGCCTCGGTGGCGGGCTCG]
consensusID : consensus_7196#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[CCGCCCACGCGTCCTGCACGGAACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCTACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGGATCCACTGGCTGCTGCACACGCTCAACATTCCGGAGCACATCCGCGACATCTGCGTGATTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGAGGAGGGCTCGGACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACCTGTGGGTGAA]
[+] EMBL BM602240 [CCGCCCACGCGTCCTGCACGGAACACATGGTGGAGAATGGGTTCTACAAGTTCCTCAACTGGTTCTACGAGTCCGCCTGGTACCCGCTGGGCCGCATCGTCGGCGGCACCGTGTACCCCGGGCTGATGATCACGTCCGGCGGGATCCACTGGCTGCTGCACACGCTCAACATTCCGGAGCACATCCGCGACATCTGCGTGATTCTGGCGCCGATCTTCAGCGGTCTCACCGCCATCTCGACGTACCTGCTGACGAAGGAGCTGTGGTCGGCCGGGGCCGGCCTGTTCGCCGCCAGCTTCATCGCGATCGTGCCCGGCTACATCAGCCGCTCGGAGGAGGGCTCGGACGATAACGAGGGCATTGCGATCTTCGCCCTCCAGTTCACCTACTACCTGTGGGTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7196#0 --------------------------------------------CCGCCCACGCGTCCGC 16
consensus_7196#3 ------------------------------------------------------------
consensus_7196#2 CCGCGGACGCGTGGGCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACC 60
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 AAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTG 76
consensus_7196#3 ------------------------------------------------------------
consensus_7196#2 AAGAGCACCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTG 120
consensus_7196#1 ------------CCGCCCACGCGTCCGCACGAACAAGATTTGCTGGACTCGGTGGTGGCG 48
consensus_7196#0 TTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGC 136
consensus_7196#3 ------------------------------------------------------------
consensus_7196#2 TTGCTGGCCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGC 180
consensus_7196#1 TTAATTGTTTCCCCG-GTGTTTTCTCCGTTCGGTTCCGTGGACAATCCGCGGTCTGGTGT 107
consensus_7196#0 ATCATCCACGAGTT-CGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAA 195
consensus_7196#3 ----------------------CCGCCCACGCGTCCTGC-ACGGAACACATGGTGGAGAA 37
consensus_7196#2 ATCATCCACGAGTT-CGATCCATGGTTCAACTACCGTGCCACGGCACACATGGTGGAGAA 239
consensus_7196#1 AAAATGCCTGTGTAACAACCTGCCGCTCG-GCAACCTGCATTAGAA---GTACTGCAAAA 163
* * * *** * * * ** * **
consensus_7196#0 TGGGT---TCTACAAGTTCCTCAACTGGTTCGACGAGTCCTCCTGGTACCCGCTGGGCCG 252
consensus_7196#3 TGGGT---TCTACAAGTTCCTCAACTGGTTCTACGAGTCCGCCTGGTACCCGCTGGGCCG 94
consensus_7196#2 TGGGT---TCTACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGGCCG 296
consensus_7196#1 CGGGTGCCTCGGTAAACGGGCCAAACG-CGGAATCGGTCTTTTTGTCGGCTTTTCGTTCG 222
**** ** ** *** * * *** ** * * * **
consensus_7196#0 CATCGT-CGGCGGCACCGTGTACCCCGGGCT--GATGATCACGTCCGGCG---GCATCCA 306
consensus_7196#3 CATCGT-CGGCGGCACCGTGTACCCCGGGCT--GATGATCACGTCCGGCG---GGATCCA 148
consensus_7196#2 CATCGT-CGGCGGCACCGTGTACCCCGGGCT--GATGATCACGTCCGGCG---GCATCCA 350
consensus_7196#1 CTTCTTACATTTTCCTCCTCCCCCCCGGGTTTTGCTGGACACGGGGTGCGTGTGTGTGTG 282
* ** * * * * * ******* * * ** **** *** * *
consensus_7196#0 CTGGC-TGCTGCACACGCTCAACATTCCGGTGCAC--ATCCGCGACATCTG-CGTGTTTC 362
consensus_7196#3 CTGGC-TGCTGCACACGCTCAACATTCCGGAGCAC--ATCCGCGACATCTG-CGTGATTC 204
consensus_7196#2 CTGGC-TGCTGCACACGCTCAACATTCCGGTGCAC--ATCCGCGACATCTGGCGTGTTTC 407
consensus_7196#1 TAGGTGTGCTTAATACGGT-GACGTGAAAAAGCAACAATCTTCCGGAAACGGAACCTTCC 341
** **** * *** * ** * *** *** * * * * *
consensus_7196#0 TGGCGCCGATCT--TCAGCGGTCTCACCG-CCATCTCGACGTACCTGCTGACGAAGGA-G 418
consensus_7196#3 TGGCGCCGATCT--TCAGCGGTCTCACCG-CCATCTCGACGTACCTGCTGACGAAGGA-G 260
consensus_7196#2 TGGCGCCGATCT--TCAGCGGTCTCACCG-CCATCTCGACGTACCTGCTGACGAAGGAAG 464
consensus_7196#1 CAGTTCCCCTTTGCCCGGCAAGCTCTCTGGCCGTCAGCATGAATCGGTCCACCAAGAGCA 401
* ** * * * ** *** * * ** ** * * * * * ** ***
consensus_7196#0 CTGTGGT-CGG-CCGGGGCCGGCCTGTTCG--CCGCCAGC-TTCATCGCGATCGTGCCCG 473
consensus_7196#3 CTGTGGT-CGG-CCGGGGCCGGCCTGTTCG--CCGCCAGC-TTCATCGCGATCGTGCCCG 315
consensus_7196#2 CTGTGGT-CGGGCCGGGGCCGGCCTGTTCG--CCGCCAGC-TTCATCGCGATCGTGCCCG 520
consensus_7196#1 CCACCCTTCGGAAGACGGCCGGCTACTCCAGCCTGATAACGTTCGCCGTCCTGTTGCTGG 461
* * *** ******* * * * * * * *** ** * *** *
consensus_7196#0 GCTACATCAGCCGC-TCGGTGGCGGGCT-CGTACGATAA-------CGAGGGCATTGCGA 524
consensus_7196#3 GCTACATCAGCCGC-TCGGAGGAGGGCT-CGGACGATAA-------CGAGGGCATTGCGA 366
consensus_7196#2 GCTAC-TCAGCCGCCTCGGTGGCGGGCT-CG----------------------------- 549
consensus_7196#1 CCTGGCTGTGCGGATTCTCCAGCCGGTTGTTTGCGGTGATCCGGTTCGAGAGCATCATCC 521
** * ** * ** * ** *
consensus_7196#0 TC---TTCGCCCTCCAGTTCACCTACTAC-TTGTGGGGTGAAGTCGGTGAAGACGGGCAA 580
consensus_7196#3 TC---TTCGCCCTCCAGTTCACCTACTAC-CTGTGGG-TGAA------------------ 403
consensus_7196#2 ------------------------------------------------------------
consensus_7196#1 ACGAGTTCGATCCATGGTTCAACTACCGTGCCACGGCGCACATGGTGGAGAATGGGTTCT 581
consensus_7196#0 CCGTGGTACTGGGCGGCCTGTACCGCCCTGTCCTACTTTCTACATGGTGTCCCGCCTGGG 640
consensus_7196#3 ------------------------------------------------------------
consensus_7196#2 ------------------------------------------------------------
consensus_7196#1 ACAAGTTCCTCAACTGGTTCGACGAGTCCGCCTGGTACCCGCTGGG-------------- 627
consensus_7196#0 GGGGGCTACGTGTTCATCATCAATCTGATCCCGCTGCACGTGTTCGTGCTGCTGATGATG 700
consensus_7196#3 ------------------------------------------------------------
consensus_7196#2 ------------------------------------------------------------
consensus_7196#1 ------------------------------------------------------------
consensus_7196#0 GGGCGCTACTCGCCCCGCCTCTTCA 725
consensus_7196#3 -------------------------
consensus_7196#2 -------------------------
consensus_7196#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||