These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1076 fasta sequence [GCACCTGTACGCGGCCCACTTCCGCGAGGTCTCCATGCTCGGGCTGCACGCGCATCTTAACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGCCCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTTCCTGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCCTCCTCCTCCTCTACCACCGCCACGCCGAACAGCAGCTGCAGTGGTGCGGACAACAATAATAGCAACAGCAGTAGTGATAGTGGTGCCGCCGGCCACGCGAACCACCACGCGCTCATCGATGGGGACGCGACGGCCCAGCCGATCTGCAAGCAGCCGCTCGAATCGGGCAGCGTCGTTGTAAATAGTAATAGTCATAATCATCACCCGCACCATCACCACAACCATCCCCATCACCATCATCACCATCATCCGGGTAAGATGGAATCGTCCTGTGCGACCGGTGGTGGTGGCGGCGGCAGTGGCAGCAGCACCGGCAGCGTTGGGGTGAGCGGATGCGGCGTCGGTTACAGCGTCGTTGGAGGGGGAGGCGGCGGTGGAGGTGGCGGTGGACATTCGGGCGGGGCCAGTTCGCAGCAGTCGTCCAACACGCAGACAACGGCATAGTGGATACGCTGGACTGCGAGTGTTGGGGCCGGCGCCGGAACCATGTTCCTGCTGGGCGGGGCGGCGTGCTGTGGGGCCCTCCAGGTGCCCACCCAAATCTGACCAAAATGTGATCTTAAAAAAAAAAACAAAAAACAAAACAAAAAAAAAACACACACAAGCATACGTGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACACAAGCGCGTGTGT] [+] EMBL BX608703 [GCACCTGTACGCGGCCCACTTCCGCGAGGTCTCCATGCTCGGGCTGCACGCGCATCTTAACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGCCCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTTCCTGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCCTCCTCCTCCTCTACCACCGCCACGCCGAACAGCAGCTGCAGTGGTGCGGACAACAATAATAGCAACAGCAGTAGTGATAGTGGTGCCGCCGGCCACGCGAACCACCACGCGCTCATCGATGGGGACGCGACGGCCCAGCCGATCTGCAAGCAGCCGCTCGAATCGGGCAGCGTCGTTGTAAATAGTAATAGTCATAATCATCACCCGCACCATCACCACAACCATCCCCATCACCATCATCACCAT ] [+] EMBL BM604877 [ ccgGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTTGTCGCCGCACCCGAACAACGGTACGATCCTGCCTCCCTCCTCCTCCTCTACCACCGCCACGCCGAACAGCAGCTGCAGTGGTGCGGACAACAATAATAGCAACAGCAGTAGTGATAGTGGTGCCGCCGGCCACGCGAACCACCACGCGCTCATCGATGGGGACGCGACGGCCCAGCCGATCTGCAAGCAGCCGCTCGAATCGGGCAGCGTCGTTGTAAATAGTAATAGTCATAATCATCACCCGCACCATCACCACAACCATCCCCATCACCATCATCACCATCATCCGGGTAAGATGGAATCGTCCTGTGCGACCGGTGGTGGTGGCGGCGGCAGTGGCAGCAGCACCGGCAGCGTTGGGGTGAGCGGATGCGGCGTCGGTTACAGCGTCGTTGGAGGGGGAGGCGGCGGTGGAGGTGGCGGTGGACATTCGGGCGGGGCCAGTTCGCAGCAGTCGTCCAACACGCAGACAACGGCATAGTGGATACGCTGGACTGCGAGTGTTGGGGCCGGCGCCGGAACCATGTTCCTGCTGGGCGGGGCGGCGTGCTGTGGGGCCCTCCAGG ] [+] EMBL BM576504 [ ccGATGGAATCGTCCTGTGCGACCGGTGGTGGTGGCGGCGGCAGTGGCAGCAGCACCGGCAGCGTTGGGGTGAGCGGATGCGGCGTCGGTTACAGCGTCGTTGGAGGGGGAGGCGGCGGTGGAGGTGGCGGTGGACATTCGGGCGGGGCCAGTTCGCAGCAGTCGTCCAACACGCAGACAACGGCATAGTGGATACGCTGGACTGCGAGTGTTGGGGCCGGCGCCGGAACCATGTTCCTGCTGGGCGGGGCGGCGTGCTGTGGGGCCCTCCAGGTGCCCACCCAAATCTGACCAAAATGTGATCTTAAAAAAAAAAACAAAAAACAAAACAAAAAAAAAACACACACAAGCATACGTGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACACAAGCGCGTGTGT] consensusID : consensus_7198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1016 fasta sequence [TGATTTGGGCACCCCGAAGAACTGATCTATGGCGTTTATGTGTGTGTTATGTTTGTGAATGAAAAATGAAGTGCGAGGTGGAGCGTGTTAAGTGAGTGATCGTTCGATGATGATGATCCTGTTGGTGTTGTGATCGCTCTTTAACAACAAACCAGGCTCCCAATAGCGACAAGTCGTCACAAACAAATCAGTGTCATTCACTCACTCCCTTACGTTTTAAGACGACTATGGACGGTGGTGGCGGTGGTCGCTTCTCCAAGATGTGGACCACGGCCGTGCTGAACGCGATCACGAGCCGGGCGACGTCCGCCTCGAAGAACCTGTCCGTGCGCTACTCGTCCATACCGAGCAATGAGGGTGGACCGTCCGCCTCGGCCAGCAATCTCAGCAAGATCATGGGCGGGTCCGGCATCATACTGCCGCTGGACGTAGAGGAAACGGTGACATGTTTCTGCAGAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGACACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGTTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCAGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCACCATGCTCGGGCTGCACGCGCATCTTAACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGCCCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTTCCTGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCC] [+] EMBL BM638961 [TGATTTGGGCACCCCGAAGAACTGATCTATGGCGTTTATGTGTGTGTTATGTTTGTGAATGAAAAATGAAGTGCGAGGTGGAGCGTGTTAAGTGAGTGATCGTTCGATGATGATGATCCTGTTGGTGTTGTGATCGCTCTTTAACAACAAACCAGGCTCCCAATAGCGACAAGTCGTCACAAACAAATCAGTGTCATTCACTCACTCCCTTACGTTTTAAGACGACTATGGACGGTGGTGGCGGTGGTCGCTTCTCCAAGATGTGGACCACGGCCGTGCTGAACGCGATCACGAGCCGGGCGACGTCCGCCTCGAAGAACCTGTCCGTGCGCTACTCGTCCATACCGAGCAATGAGGGTGGACCGTCCGCCTCGGCCAGCAATCTCAGCAAGATCATGGGCGGGTCCGGCATCATACTGCCGCTGGACGTAGAGGAAACGGTGACATGTTTCTGCAGAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGACACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGTTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCAGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCA ] [+] EMBL BX605399 [ GCGGAAGCTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCCGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCACCATGCTCGGGCTGCACGCGCATCTTAACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGCCCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTTCCTGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCC] consensusID : consensus_7198#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence [GCAGAATCNCCACGAGGAAAGTGTGTACGAGCGTGCGTCACCATCCAAGCTGGGCCTGATCGAGTGTATACTGTACCTGCGGAAGCCTATGTGGCAGGTGGGCATCGTACCGGCAAAGCTGACTGACGCACTCGGGTCGCTCGTGCGCTATGCTCAGGAATCTCTCAACATCTTCTTCTGCCCGACAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGACACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGCTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCCGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCAACCTCGTGTACGGTACCATCAGTGAATTCTGCACTACATCCGGCTGTCCAGACATGACCGGCCCAGGAACTAGGATGTACCTCTGGTTCGACGAGAAGGGCAAGAAGACGCGGGTGGCCGGCCCACAGTACATCGACTACGTGATGACGGTTCACGCAGAAACGGTCAGCGACGAGTCGATCTTTCCCACCAAATATGCCAATGAGTTCCCTAGTTCGTTCGAGAGCATCGCGGCGGCCAAAATCGTCCGCCTGCTGTTCCATGTGATCGCGCACCTGTACGGCGGCCACTTTCGGGAAAGGGTCACACATTGCCTTCGGGGGCTTGGAACAGCGCGGCCATTCGTTTAACCGTCAACCCTTTTCGGGCAATTCTACCCGGGGTTCCATTAGGGCGGACATTTAANTCCTGATTAGGAAANCCCANGAAGNAGAGCACCAGGAGTTGGCTGCGG] [+] EMBL BX467508 [GCAGAATCNCCACGAGGAAAGTGTGTACGAGCGTGCGTCACCATCCAAGCTGGGCCTGATCGAGTGTATACTGTACCTGCGGAAGCCTATGTGGCAGGTGGGCATCGTACCGGCAAAGCTGACTGACGCACTCGGGTCGCTCGTGCGCTATGCTCAGGAATCTCTCAACATCTTCTTCTGCCCGACAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGACACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGCTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCCGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCAACCTCGTGTACGGTACCATCAGTGAATTCTGCACTACATCCGGCTGTCCAGACATGACCGGCCCAGGAACTAGGATGTACCTCTGGTTCGACGAGAAGGGCAAGAAGACGCGGGTGGCCGGCCCACAGTACATCGACTACGTGATGACGGTTCACGCAGAAACGGTCAGCGACGAGTCGATCTTTCCCACCAAATATGCCAATGAGTTCCCTAGTTCGTTCGAGAGCATCGCGGCGGCCAAAATCGTCCGCCTGCTGTTCCATGTGATCGCGCACCTGTACGGCGGCCACTTTCGGGAAAGGGTCACACATTGCCTTCGGGGGCTTGGAACAGCGCGGCCATTCGTTTAACCGTCAACCCTTTTCGGGCAATTCTACCCGGGGTTCCATTAGGGCGGACATTTAANTCCTGATTAGGAAANCCCANGAAGNAGAGCACCAGGAGTTGGCTGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7198#0 GCACCTGTACGCGGCCCACTT-CCGCGAGGTCTCCATGCTCGGGCTGCACGCGCATCTTA 59 consensus_7198#1 -----------TGATTTGGGCACCCCGAAGAACTGATCTATGGCGTTTATGTGTGTGTTA 49 consensus_7198#2 ------------------------------------------------------------ consensus_7198#0 ACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAG 119 consensus_7198#1 TGTTTGTGAATGAAAAATGAAGTGCGAGGTG-GAGCGTGTTAAG-TGAGTGATCGTTCGA 107 consensus_7198#2 ------------------------------------------------------------ consensus_7198#0 AGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGC 179 consensus_7198#1 TGATGATGATCCTGT-TGGTGTTGTGATCGCTCTTTAAC-----AACAAACCAG----GC 157 consensus_7198#2 ------------------------------------------------------------ consensus_7198#0 CCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGA 239 consensus_7198#1 TCCCAATAGCGACAAGTCGTCACAAACAAATCAGTGTCATTCACTCACTCCCTTACGTT- 216 consensus_7198#2 ------------------------------------------------------------ consensus_7198#0 CCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTT 299 consensus_7198#1 TTAAGACGACTATGGACGGTGGTGGCG-GTGGTCG--CTTCTCCAAGATGTGGACCACGG 273 consensus_7198#2 ---------------------------------------------------GCAGAATCN 9 * consensus_7198#0 CC-TGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCG 358 consensus_7198#1 CCGTGCTGAACGCGATCA---CGAGCCGG----GCGACGTCCGCCTCGAAGAACCTGTCC 326 consensus_7198#2 CCACGAGGAAAGTGTGTA---CGAGCG-----TGCGTCACCATCCAAGCTGGGCCTGATC 61 ** * * * * * * ** * * ** * ** consensus_7198#0 CCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCCTCCTCCTCCTCT 418 consensus_7198#1 GTGCGCTACTCGT--CCATACC-GAGCAATGAGGGTGGACCGTCCGCCTCGGCCAGCAAT 383 consensus_7198#2 GAGTGTATACTGTACCTGCGGA-AGCCTATGTGGCAGGTGGGCATCGTACCGGCAAAGCT 120 * ** * * * * * * * * consensus_7198#0 ACCACCGCCACGCCGAACAGCAGCTGCA--GTGGTGCGGACAACAATAATAGCAACAGCA 476 consensus_7198#1 CTCAGCAAGATCATGGGCGGGTCCGGCATCATACTGCCGCTGGACGTAGAGGAAACGGTG 443 consensus_7198#2 GACTGACGCACT-CGGGTCGCTCGTGCGCTATGCT-----CAGGAATC-TCTCAACATCT 173 * * * * ** * * * *** consensus_7198#0 GTA-GTGATAGTGGTGCCGCCGGCCACGCGAACCACCACGCGCTCATCGATGGGGACGCG 535 consensus_7198#1 ACATGTTTCTGCAGAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGAC 503 consensus_7198#2 TCTTCTGCCCG-ACAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGAC 232 * * *** * * * * * * *** ** ** ** consensus_7198#0 ACGGCCCAGCCGATCTGCAAGCAGCCGCTCGAATCGGGCAGCGTCGTTGTAAATA-GTAA 594 consensus_7198#1 ACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGTTACCGGATGCGGACCTGCGA 563 consensus_7198#2 ACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGCTACCGGATGCGGACCTGCGA 292 ** * ** * ** *** ** * * ** * * * consensus_7198#0 TAGTCATAATCATCACCCGCACCATC--ACCACAACCATCCCCATCACCATCATCACCAT 652 consensus_7198#1 TTACTAGTGGATCTACCGGCAGGCTTGGACTACAACGA-----ATGGCTAGCATCGCACA 618 consensus_7198#2 TTACTAGTGGATCTACCGGCCGGCTTGGACTACAACGA-----ATGGCTAGCATCGCACA 347 * * *** ** * ** ***** * ** * * **** * consensus_7198#0 CATCCGGGTAAGATGGAATCGTC--CTGTGCGACCGGTGGTGGTGGCGGCGGCAGTGGCA 710 consensus_7198#1 CCCTTGCGCTGTTCGAGCACGTCA-CCATGCT-CGGGCTGCACGCGCATCT-TAACCTCA 675 consensus_7198#2 CCCTTGCGCTGTTCGAGCACGTCAACCTCGTGTACGGTACCATCAGTGAATTCTGCACTA 407 * * * * **** * * ** * * consensus_7198#0 GCAGCACCGGCAGCGTTGGGGTGAGCGGATGC-----GGCGTCG-GTT-ACAGCGTCGTT 763 consensus_7198#1 CCTTCGCGCATCTCACCGCGTT--CCATAGGC-----GATTTAA-TCTGATAGAACCCAA 727 consensus_7198#2 CATCCGGCTGTCCAGACATGACCGGCCCAGGAACTAGGATGTACCTCTGGTTCGACGAGA 467 * * * * * * * * consensus_7198#0 GGAGGGGGAGGCGGCGGTGGAGGTGGCGGTGGACATTCGGGCG---G-GGCCAGTTC--- 816 consensus_7198#1 AGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTG---ACGGACGATCC--- 781 consensus_7198#2 AGGGCAAGAAGACGCGGGTGGCCGGCCCACAGTACATCGACTACGTGATGACGGTTCACG 527 * * ** * * * * * ** * * * * consensus_7198#0 --GCAGCAGTCGTCCAACA------CGCAGACAACGGCATAGTGGATACGCTGGACTGCG 868 consensus_7198#1 --GACGGCGCCCGCGGTCA------C-----CACCGGCGCCGACGGCAAGGCGGACAGT- 827 consensus_7198#2 CAGAAACGGTCAGCGACGAGTCGATCTTTCCCACCAAATATGCCAATGAGTTCCCTAGTT 587 * * * * * * ** * * * * consensus_7198#0 AGTGT-----TGGGGCCGGCGCCGGAACCATGTTCCTGCTGGGCGGGGC-GGCGTGCTGT 922 consensus_7198#1 AGTGC-----CTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCT 882 consensus_7198#2 CGTTCGAGAGCATCGCGGCGGCCAAAATCGTCCGCCTGCTGTTCCATGTGATCGCGCACC 647 ** * ** * * * * * * * consensus_7198#0 GGGGCC-C-TCCAGGTGCCCACCCAAATCTGAC-CAAAATGTGATCTTAAAAAAAAAAAC 979 consensus_7198#1 CGTCCT-CGTCCACGTCCTCGACCGCTTCCTGC-TCGCCGCCGCTACTCCTAACCGCCGC 940 consensus_7198#2 TGTACGGCGGCCACTTTCGGGAAAGGGTCACACATTGCCTTCGGGGGCTTGGAACAGCGC 707 * * * *** * * ** * * * * consensus_7198#0 AAAAAAC------AAAACAAAAAAAAAACACACACAAGCATACGTGGAAAAAGGATG-TG 1032 consensus_7198#1 TGCAGCC------GCCGCCTCCTCTAC-CGTGCCGCCGCCGTCGTCGTCGCCACACC-CG 992 consensus_7198#2 GGCCATTCGTTTAACCGTCAACCCTTTTCGGGCAATTCTACCCGGGGTTCCATTAGGGCG 767 * * ** * * * consensus_7198#0 AAGCGAAAGGTGGCAAACACACACACACACACAAGCGCGTGTGT-------------- 1076 consensus_7198#1 AAC--AACGGTA-CGATCCTGCCTCCC------------------------------- 1016 consensus_7198#2 GACATTTAANTCCTGATTAGGAAANCCCANGAAGNAGAGCACCAGGAGTTGGCTGCGG 825 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||