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Anopheles gambiae
cluster # 7204 cluster # 7204       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7204#0 length = 970 sequences # 5  
consensus_7204#1 length = 635 sequences # 1  

consensusID : consensus_7204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 970
fasta sequence
                              [GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAG-AAAATGGTTTAATGAACAAACAAAAAAAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAGGAATAAAAACACAGAAGAAAAAAC]

[+] EMBL BX608622             [GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAA                                                                                                                                                                                                                                              ]
[+] EMBL BX611676             [GATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTTCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGT AAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGG                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX614717             [                                                                                                         CTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACCACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGCAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAATTAAAAATGTTAGACAACTAAACAAGCTGAACAAA                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BX611675             [                                                                                                                                                                                                                                                                                                                                              ACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTTCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAGAAAAATGGTTTAA                                                                                    ]
[+] EMBL BX616938             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAG AAAATGGTTTAATGAACAAACAAAAAAAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAGGAATAAAAACACAGAAGAAAAAAC]


>consensus_7204#0 GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTA CGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAA AAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGA TTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCC TTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACA TATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATC ATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTG TAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTG CATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGA TTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGAC AACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATG CAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATA CAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATC TTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATT AGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAGAAAATGGTTTAATGAACAAACAAAAA AAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAGGAATAAAAACACAG AAGAAAAAAC



consensusID : consensus_7204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence
                              [ACCCACGCGTCCGCCCACGCGTCCGAGAAAACCAAACAGAGGATTGAAAGAAAGAAACTAGAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAATAGAAAATGCAGTAGAAAAAAAAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGGCTGAAAATAATGGCATAATATTTACTTTACATTAATCAATCGAATAAGCTACATTATTGTACATCCATTATTGGTATCTTTGGTTCTTACTTACATAAATTTTGGTTTTGGTGACATGGTTAAGGTTATAGTTTACGTTGATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTCGTACTATTATATTGTTCGTTATCTTATTCACTTTTAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTCAAAAGAAATGCAAGTTTATAGTTTTTTCCTAACTATTTTATAGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTA]

[+] EMBL BM625575             [ACCCACGCGTCCGCCCACGCGTCCGAGAAAACCAAACAGAGGATTGAAAGAAAGAAACTAGAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAATAGAAAATGCAGTAGAAAAAAAAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGGCTGAAAATAATGGCATAATATTTACTTTACATTAATCAATCGAATAAGCTACATTATTGTACATCCATTATTGGTATCTTTGGTTCTTACTTACATAAATTTTGGTTTTGGTGACATGGTTAAGGTTATAGTTTACGTTGATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTCGTACTATTATATTGTTCGTTATCTTATTCACTTTTAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTCAAAAGAAATGCAAGTTTATAGTTTTTTCCTAACTATTTTATAGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTA]


>consensus_7204#1 ACCCACGCGTCCGCCCACGCGTCCGAGAAAACCAAACAGAGGATTGAAAGAAAGAAACTA GAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAATAGAAAATGCAGTAGAAAAAA AAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGGCTGAAAATAATGGCATAATA TTTACTTTACATTAATCAATCGAATAAGCTACATTATTGTACATCCATTATTGGTATCTT TGGTTCTTACTTACATAAATTTTGGTTTTGGTGACATGGTTAAGGTTATAGTTTACGTTG ATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTAC GTAATCTATTACAATACCATTCGTACTATTATATTGTTCGTTATCTTATTCACTTTTAAA AGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGAT TCAAAAGAAATGCAAGTTTATAGTTTTTTCCTAACTATTTTATAGTACACGCTGCTTCAA CAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATA TATACTACATATATGATCATGTTTAAAACCCACTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7204#0      GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTA 60
consensus_7204#1      ------------------------------------------------------------
                                                                                  

consensus_7204#0      CGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAA 120
consensus_7204#1      ------------------------------------------------------------
                                                                                  

consensus_7204#0      AAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGA 180
consensus_7204#1      --------------ACCCACGCGTCCGCCCACGCGTCCGAGAAAACC--AAACAG-AGGA 43
                                    *     **  **      *      *** ***       ** * **

consensus_7204#0      TTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCC 240
consensus_7204#1      TTGAAAG---AAAGAAACTAGAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAAT 100
                      *** ***   * **    *     *  *   ** ** * * **    *    **      

consensus_7204#0      TTGAAATATAGAAGAAACAAAACTATATAAATATACATA-----ACCATATACATATATA 295
consensus_7204#1      AGAAAATGCAGTAGAAAAAAAAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGG 160
                         ****  ** ***** ****  * * *** *  **       *   *  *  **    

consensus_7204#0      CTACATATA-TG--ATCATGTTTAAAACCCACTACT-ATTAAAACAAAACACACTCACAA 351
consensus_7204#1      CTGAAAATAATGGCATAATATTTACTTTACATTAATCAATCGAATAAGCTACATTATTGT 220
                      **  * *** **  ** ** ****     ** ** * * *  ** **   *** *     

consensus_7204#0      ACACCCATCATCAGAGTAC--AGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGT 409
consensus_7204#1      ACATCCATTATTGGTATCTTTGGTTCTTACTTACATAAATTTTGGTTTTGGTGA---CAT 277
                      *** **** **  *  *     **   ***    ** *  *   ** *   **      *

consensus_7204#0      GTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCAC 469
consensus_7204#1      GGTTAAGGTTATAGTT-TACGTTGATTATGATTACTTAGCTACT-AAGCTATTTATTATA 335
                      *  *  *  * ****  * * ** **     *    *    *** * ** *     *   

consensus_7204#0      GTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCAT 529
consensus_7204#1      ATTCATCATTGAATTA-CATTTTTACGTAATCTATTACAATACCATTC--GTACTATTAT 392
                       *  * *  ** ** * **    ** * * *  *  ** * ******    * **   **

consensus_7204#0      TTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAA 589
consensus_7204#1      ATTGTTCGTTATCTT---------ATTCACTTTTAAAAGAGTCAGTTCAAAATGTTGCAC 443
                       *  ***   ** *          *  ***  *  * * **  *  * *** **  * * 

consensus_7204#0      AAATGTTAGACAACTAAACAAGCTGAACAAATCT--TTGAGGATAAGCA-GGGTTTGCAG 646
consensus_7204#1      CCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTCAAAAGAAATGCAAGTTTATAG 503
                         * ** ** **  * * **  *     * * *  ** *  * **      ****  **

consensus_7204#0      AAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAAC 706
consensus_7204#1      TTTTTTCCTAACTATTTTATAGTAC-ACGCTGCTTCAACAACCTCCCTTGAAATATAGAA 562
                         * *  * * *    *  *  ** *   **   **** *         * *** * * 

consensus_7204#0      AAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAAC 766
consensus_7204#1      GAAACAAAACTATATAAATATACATAACCATA--TACATATATACTACATATATGATCAT 620
                       **  ** *  *** *   * * * *** * *   *** * * **   *   *     * 

consensus_7204#0      CAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACC 826
consensus_7204#1      GTTTAAAACCCACTA--------------------------------------------- 635
                         ** *** **                                                

consensus_7204#0      ACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAGAAAATGGTTTAA 886
consensus_7204#1      ------------------------------------------------------------
                                                                                  

consensus_7204#0      TGAACAAACAAAAAAAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAG 946
consensus_7204#1      ------------------------------------------------------------
                                                                                  

consensus_7204#0      GAATAAAAACACAGAAGAAAAAAC 970
consensus_7204#1      ------------------------
                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)