These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 970 fasta sequence [GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAG-AAAATGGTTTAATGAACAAACAAAAAAAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAGGAATAAAAACACAGAAGAAAAAAC] [+] EMBL BX608622 [GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAA ] [+] EMBL BX611676 [GATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTTCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGT AAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGG ] [+] EMBL BX614717 [ CTTATTCACTTTCAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACCACATATATGATCATGTTTAAAACCCACTACTATTAAAACAAAACACACTCACAAACACCCATCATCAGAGTACAGCAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAATTAAAAATGTTAGACAACTAAACAAGCTGAACAAA ] [-] EMBL BX611675 [ ACAAAACACACTCACAAACACCCATCATCAGAGTACAGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGTGTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCACGTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCATTTGCTTCCAGATTTTCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAGAAAAATGGTTTAA ] [+] EMBL BX616938 [ AAAAATGTTAGACAACTAAACAAGCTGAACAAATCTTTGAGGATAAGCAGGGTTTGCAGAAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAACAAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAACCAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACCACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAG AAAATGGTTTAATGAACAAACAAAAAAAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAGGAATAAAAACACAGAAGAAAAAAC] consensusID : consensus_7204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [ACCCACGCGTCCGCCCACGCGTCCGAGAAAACCAAACAGAGGATTGAAAGAAAGAAACTAGAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAATAGAAAATGCAGTAGAAAAAAAAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGGCTGAAAATAATGGCATAATATTTACTTTACATTAATCAATCGAATAAGCTACATTATTGTACATCCATTATTGGTATCTTTGGTTCTTACTTACATAAATTTTGGTTTTGGTGACATGGTTAAGGTTATAGTTTACGTTGATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTCGTACTATTATATTGTTCGTTATCTTATTCACTTTTAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTCAAAAGAAATGCAAGTTTATAGTTTTTTCCTAACTATTTTATAGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTA] [+] EMBL BM625575 [ACCCACGCGTCCGCCCACGCGTCCGAGAAAACCAAACAGAGGATTGAAAGAAAGAAACTAGAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAATAGAAAATGCAGTAGAAAAAAAAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGGCTGAAAATAATGGCATAATATTTACTTTACATTAATCAATCGAATAAGCTACATTATTGTACATCCATTATTGGTATCTTTGGTTCTTACTTACATAAATTTTGGTTTTGGTGACATGGTTAAGGTTATAGTTTACGTTGATTATGATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTACGTAATCTATTACAATACCATTCGTACTATTATATTGTTCGTTATCTTATTCACTTTTAAAAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTCAAAAGAAATGCAAGTTTATAGTTTTTTCCTAACTATTTTATAGTACACGCTGCTTCAACAACCTCCCTTGAAATATAGAAGAAACAAAACTATATAAATATACATAACCATATACATATATACTACATATATGATCATGTTTAAAACCCACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7204#0 GATTATCATTACTTAGCTACTAAGCTATTTATTATAATTCATCATTGAATTACATTTTTA 60 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 CGTAATCTATTACAATACCATTGGTACTATTATATTGTTCGATATCTTATTCACTTTCAA 120 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 AAGAGTCAGTTCAAAATGTTGCACCCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGA 180 consensus_7204#1 --------------ACCCACGCGTCCGCCCACGCGTCCGAGAAAACC--AAACAG-AGGA 43 * ** ** * *** *** ** * ** consensus_7204#0 TTGCAAGTTTATAGTTTTTTCCTAACTATTTTATTGTACACGCTGCTTCAACAACCTCCC 240 consensus_7204#1 TTGAAAG---AAAGAAACTAGAAGAAAAAACTAGTGGAAAAGCAATGTAGTAAAGTAAAT 100 *** *** * ** * * * ** ** * * ** * ** consensus_7204#0 TTGAAATATAGAAGAAACAAAACTATATAAATATACATA-----ACCATATACATATATA 295 consensus_7204#1 AGAAAATGCAGTAGAAAAAAAAACAAACAAAAAGGCACGGGAGGATGGTGAAAGTAACGG 160 **** ** ***** **** * * *** * ** * * * ** consensus_7204#0 CTACATATA-TG--ATCATGTTTAAAACCCACTACT-ATTAAAACAAAACACACTCACAA 351 consensus_7204#1 CTGAAAATAATGGCATAATATTTACTTTACATTAATCAATCGAATAAGCTACATTATTGT 220 ** * *** ** ** ** **** ** ** * * * ** ** *** * consensus_7204#0 ACACCCATCATCAGAGTAC--AGTAAGTACGCCAATCAGCTCATGTGTGAATGTGTCTGT 409 consensus_7204#1 ACATCCATTATTGGTATCTTTGGTTCTTACTTACATAAATTTTGGTTTTGGTGA---CAT 277 *** **** ** * * ** *** ** * * ** * ** * consensus_7204#0 GTGTGGGTGTGTAGTCATGCTTTAATCTCAGTAGGCTCCTCACTCACGCGACACTCTCAC 469 consensus_7204#1 GGTTAAGGTTATAGTT-TACGTTGATTATGATTACTTAGCTACT-AAGCTATTTATTATA 335 * * * * **** * * ** ** * * *** * ** * * consensus_7204#0 GTCTACCGCTGCATAAACAAGCATAAGCACTAAACGACTAAACCATTTCAATCCTGGCAT 529 consensus_7204#1 ATTCATCATTGAATTA-CATTTTTACGTAATCTATTACAATACCATTC--GTACTATTAT 392 * * * ** ** * ** ** * * * * ** * ****** * ** ** consensus_7204#0 TTGCTTCCAGATTTCCTAACACAAACACACGATAGACACAGCAAAGTGAAAGTGAAGTAA 589 consensus_7204#1 ATTGTTCGTTATCTT---------ATTCACTTTTAAAAGAGTCAGTTCAAAATGTTGCAC 443 * *** ** * * *** * * * ** * * *** ** * * consensus_7204#0 AAATGTTAGACAACTAAACAAGCTGAACAAATCT--TTGAGGATAAGCA-GGGTTTGCAG 646 consensus_7204#1 CCCTTTTTGAAAAAAAGAGAACTTTTGTTAGTATGATTCAAAAGAAATGCAAGTTTATAG 503 * ** ** ** * * ** * * * * ** * * ** **** ** consensus_7204#0 AAATATATTGAATGCAATTGATCACCAAAATGAACCAACTAGGCAAACAAACATACAAAC 706 consensus_7204#1 TTTTTTCCTAACTATTTTATAGTAC-ACGCTGCTTCAACAACCTCCCTTGAAATATAGAA 562 * * * * * * * ** * ** **** * * *** * * consensus_7204#0 AAACAAACAGCATACAGCAACAAACAACAACAACAACAAAAACACATTAACAACAGCAAC 766 consensus_7204#1 GAAACAAAACTATATAAATATACATAACCATA--TACATATATACTACATATATGATCAT 620 ** ** * *** * * * * *** * * *** * * ** * * * consensus_7204#0 CAGTAGAACGCATCTTCAATACAATGAACAACAATCATCAACATCACCACCACAACAACC 826 consensus_7204#1 GTTTAAAACCCACTA--------------------------------------------- 635 ** *** ** consensus_7204#0 ACCAACAAGGCATTAGGCGTCGTTTGTTTATAATTGTTAAAAGAAAAGAAAATGGTTTAA 886 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 TGAACAAACAAAAAAAAAAGAAACAGCGTTACACATTGAAAATGAGATTAAGAAATTAAG 946 consensus_7204#1 ------------------------------------------------------------ consensus_7204#0 GAATAAAAACACAGAAGAAAAAAC 970 consensus_7204#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||