These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1462 fasta sequence [AGNATCGGCAGCACGCGCGCTCAGTGATTATCCGTGATAGTAAAATCACTTTTTAAGTGCAGCCAACGATGCATAGAATTCCCTCGCTAGGAGTGTAACAAATAAGCATACGACACCTTTCTCTTCTCCGTACGGCTGGCACTGAACAATGAAAGGACACAGCAGGGCTCGGAACGGATGCGCACCTTGTGCGTTTATGTGTGCGCTTGTGTTAACCGAGCTGAGTGAGCTGAAAAGTTACTCGATCAAGGATTAAGGGCAAAAGGGAGGGTTGGGTGGCTGGTTTAAACCCGATGCCGGTAACTGCATGCATCCGCC-GCAACCGCTTTAGCGCCCAGTTGGTGTCACATTCCTGTGATTTTGGCTTCGTTTCTGCCGATTAAATTGGGCTTTGAGAGTTGGTGGTAGAGAGTGAGTGAAATCGACGCTCCCCGGCAGCATATGCGCGGGCACGAGCAATTAGCAGCGCATATATGTACAGAATACAATTGTAATCAGCAGAAGCAAACAATGGATAAGATGTAAGGTAAGGGTTAATAGACACACAACAAAAACCGAGCGCTTTGCAAAGGCACAACACGAAGGACTGAATGAAGGGAAGGGATGGCAGGTTGAGTAGTTCGGGCACCGGACCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATACAAAAACCTGCGCCAACGATGGTCCTTAGGTGCCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTAAAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCGTGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAGACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCATACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGT] [+] EMBL BX619913 [AGNATCGGCAGCACGCGCGCTCAGTGATTATCCGTGATAGTAAAATCACTTTTTAAGTGCAGCCAACGATGCATAGAATTCCCTCGCTAGGAGTGTAACAAATAAGCATACGACACCTTTCTCTTCTCCGTACGGCTGGCACTGAACAATGAAAGGACACAGCAGGGCTCGGAACGGATGCGCACCTTGTGCGTTTATGTGTGCGCTTGTGTTAACCGAGCTGAGTGAGCTGAAAAGTTACTCGATCAAGGATTAAGGGCAAAAGGGAGGGTTGGGTGGCTGGTTTAAACCCGATGCCGGTAACTGCATGCATCCGCCNGCAACCG ] [+] EMBL BX612089 [ CGAGCTGAGTGAGCTGAAAAGTTACTCGATCAAGGATTAAGGGCAAAAGGGAGGGTTGGGTGGCTGGTTTAAACCCGATGCCGGTAACTGCATGCATCCGCC GCAACCGCTTTAGCGCCCAGTTGGTGTCACATTCCTGTGATTTTGGCTTCGTTTCTGCCGATTAAATTGGGCTTTGAGAGTTGGTGGTAGAGAGTGAGTGAAATCGACGCTCCCCGGCAGCATATGCGCGGGCACGAGCAATTAGCAGCGCATATATGTACAGAATACAATTGTAATCAGCAGAAGCAAACAATGGATAAGATGTAAGGTAAGGGTTAATAGACACACAACAAAAACCGAGCGCTTTGCAAAGGCACAACACGAAGGACTGAATGAAGGGAAGGGATGGCAGGTTGAGTAGTTCGGGCACCGGACCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATACAAAAACCTGCGCCAACGATGGTCCTTAGGTGCCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTAAAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGC ] [+] EMBL BX613138 [ AGAGAGTGAGTGAAATCGACGCTCCCTGGCAGCATATGCGCGGGCACGAGCAATTAGCAGCGCATATATGTACAGAATACAATTGTAATCAGCAGAAGCAAACAATGGATAAGATGTAAGGTAAGGGTTAATAGACACACAACAAAAACCGAGCGCTTTGCAAAGGCACAACACGAAGGACTGAATGAAGGGAAGGGATGGCAGGTTGAGTAGTTCGGGCACCGGACCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATACAAAAACCTGCGCCAACGATGGTCCTTAGGTGCCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTAAAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCC ] [+] EMBL BX628676 [ GATGGTCCTTAGGTGCCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTAAAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCGTGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAGACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCATACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGT] consensusID : consensus_7210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGCCCACGCGTCCGCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCGTGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAGACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCATACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGTCGCCGGCTGAAAAGGGGTGTGAAATGATACCGCTTAAAACCGATCATTTGTCATATAAGTAACACACTAAGCTGATATGATAATTACATATTATTATTATTA] [+] EMBL BM631274 [CCGCCCACGCGTCCGCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCGTGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAGACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCATACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGTCGCCGGCTGAAAAGGGGTGTGAAATGATACCGCTTAAAACCGATCATTTGTCATATAAGTAACACACTAAGCTGATATGATAATTACATATTATTATTATTA] consensusID : consensus_7210#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CCGCCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATAGAAACCCCGCGCCAATGATCGCCAATGATGGTCGTTGGGTGTTTTTCTCTCTTCTCCAACACCCGTTTTGGTCAGCGTCGTTGCTGGGGACACTAAAAAGTAGGCTTTGAAAATGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGCATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGGAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACAC] [+] EMBL BM588386 [CCGCCGGACATGATGGACCCTGGTTGCGGGACTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACACAGAGATTGCAGAGTGACACTAGATAGAAACCCCGCGCCAATGATCGCCAATGATGGTCGTTGGGTGTTTTTCTCTCTTCTCCAACACCCGTTTTGGTCAGCGTCGTTGCTGGGGACACTAAAAAGTAGGCTTTGAAAATGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGCAATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAATGTCGCATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGGAAAGTAGAGTATGATGAACGCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGACAAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTCCTATTAATTCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCAAGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTTGTAAATTTAACACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7210#0 AGNATCGGCAGCACGCGCGCTCAGTGATTATCCGTGATAGTAAAATCACTTTTTAAGTGC 60 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 AGCCAACGATGCATAGAATTCCCTCGCTAGGAGTGTAACAAATAAGCATACGACACCTTT 120 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 CTCTTCTCCGTACGGCTGGCACTGAACAATGAAAGGACACAGCAGGGCTCGGAACGGATG 180 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 CGCACCTTGTGCGTTTATGTGTGCGCTTGTGTTAACCGAGCTGAGTGAGCTGAAAAGTTA 240 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 CTCGATCAAGGATTAAGGGCAAAAGGGAGGGTTGGGTGGCTGGTTTAAACCCGATGCCGG 300 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 TAACTGCATGCATCCGCCGCAACCGCTTTAGCGCCCAGTTGGTGTCACATTCCTGTGATT 360 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 TTGGCTTCGTTTCTGCCGATTAAATTGGGCTTTGAGAGTTGGTGGTAGAGAGTGAGTGAA 420 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 ATCGACGCTCCCCGGCAGCATATGCGCGGGCACGAGCAATTAGCAGCGCATATATGTACA 480 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 GAATACAATTGTAATCAGCAGAAGCAAACAATGGATAAGATGTAAGGTAAGGGTTAATAG 540 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 ACACACAACAAAAACCGAGCGCTTTGCAAAGGCACAACACGAAGGACTGAATGAAGGGAA 600 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 GGGATGGCAGGTTGAGTAGTTCGGGCACCGGACCGGACATGATGGACCCTGGTTGCGGGA 660 consensus_7210#2 ---------------------------CCG--CCGGACATGATGGACCCTGGTTGCGGGA 31 consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 CTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACAC 720 consensus_7210#2 CTTGGAATGATGGAGAAGATTGCGAATGAACATCAACATCATTTCCTATTTGTGGGACAC 91 consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 AGAGATTGCAGAGTGACACTAGATACAAA---------AACCTGCGCCAACGATGGTCCT 771 consensus_7210#2 AGAGATTGCAGAGTGACACTAGATAGAAACCCCGCGCCAATGATCGCCAATGATGGTCGT 151 consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 TAGGTG---------------------CCGTTTTGGTCAGCGTCGTTGCTGGGGACGCTA 810 consensus_7210#2 TGGGTGTTTTTCTCTCTTCTCCAACACCCGTTTTGGTCAGCGTCGTTGCTGGGGACACTA 211 consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 AAAAGTAGGCTTTGAAAGTGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGC 870 consensus_7210#2 AAAAGTAGGCTTTGAAAATGCAGCCGAATCGCCATATAGTGCAGCTTAACACGTGACTGC 271 consensus_7210#1 ------------------------------------------------------------ consensus_7210#0 AATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAAT 930 consensus_7210#2 AATAGAACATCAACATTCTGGTTAGGCCGTCAGGGCAAGAAAAACACGTTTGAAGCAAAT 331 consensus_7210#1 ----------CCGCCCACGCGTCCG--CGTCAGGGCAAGAAAAACACGTTTGAAGCAAAT 48 * * * ** * ********************************* consensus_7210#0 GTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAAC 990 consensus_7210#2 GTCGCATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGGAAAGTAGAGTATGATGAAC 391 consensus_7210#1 GTCGAATTGCTAGTGCGCATATATTACCGAGGCGGAAGCGAAAAGTAGAGTATGATGAAC 108 **** *********************************** ******************* consensus_7210#0 GCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGAC 1050 consensus_7210#2 GCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGAC 451 consensus_7210#1 GCGAGTTTTCGTAGACTAAGTAAGACTGCTGCGCTGTATGTATGTTAAATCGTACTCGAC 168 ************************************************************ consensus_7210#0 AAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAAT 1110 consensus_7210#2 AAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTT-CCTATTAAT 510 consensus_7210#1 AAGTGAATTATTTCTGGTGCGAATTTTTGCCGTTTCATACGTTTTTTTTTTCCTATTAAT 228 ************************************************** ********* consensus_7210#0 TCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCA 1170 consensus_7210#2 TCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCA 570 consensus_7210#1 TCCTTTTCCTTAAATGCTTCAACGCAAAAGCAAGTCAGCGTTGGTATTGTTTTACACCCA 288 ************************************************************ consensus_7210#0 AGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTT 1230 consensus_7210#2 AGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTT 630 consensus_7210#1 AGACTAAACCAATCCCCCCTCCTATTTCGAACTAGTTTTACGTGTCAATGAGCTTTATTT 348 ************************************************************ consensus_7210#0 GTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCG 1290 consensus_7210#2 GTAAATTTAACACAC--------------------------------------------- 645 consensus_7210#1 GTAAATTTAACACACGTACACTTTTGCCTCATTTTTGCTCCATAAAATGATTCCTGTTCG 408 *************** consensus_7210#0 TGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAG 1350 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 TGTACTTTACAGTGAGGAAGAGGGGTTCCCAAAAGCAGATAAGTTATGTGGGAATTCAAG 468 consensus_7210#0 ACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCA 1410 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 ACAGTTAACTCAACCGTTGAATTGAAACGGCCTGACATCCGGTGTGTGCGTTGTTGCGCA 528 consensus_7210#0 TACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGT-------- 1462 consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 TACATGGTACATGCTGCAAAGCAAATAGGTCGCTCGGAACGAGAACGGCAGTCGCCGGCT 588 consensus_7210#0 ------------------------------------------------------------ consensus_7210#2 ------------------------------------------------------------ consensus_7210#1 GAAAAGGGGTGTGAAATGATACCGCTTAAAACCGATCATTTGTCATATAAGTAACACACT 648 consensus_7210#0 ---------------------------------- consensus_7210#2 ---------------------------------- consensus_7210#1 AAGCTGATATGATAATTACATATTATTATTATTA 682 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||