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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 795 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTTCCACCCGCGAGGATAGTTCGGCCCGCGCGTTTCCACCCCCGGACACGAGAACGACGAAAACATCCCCATTTGTCAGAATGTTCCGTGCACAGTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGGGGAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACGCGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATCTGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTGTGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACAAGTTCAAGGCTGTGCGTAGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGATCCGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCGTATACGGCGGGATGGCATCGATAATGGCTGAATTCGGAACGTTTCCCATCGACACCACCAAAACTCGTTTGCAAATTCAAGGGCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACCGTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAGCTGGAGGTTTCAAAATGAGCGTAATAGAACTTGTTGTGTACGTAGACACTGAAATGTTCCTAAAACAAAGTAGCACTAGCACGTGCATGGTGC]
[+] EMBL BM613902 [CCGCGGACGCGTGGGCGGACGCGTGGGTTCCACCCGCGAGGATAGTTCGGCCCGCGCGTTTCCACCCCCGGACACGAGAACGACGAAAACATCCCCATTTGTCAGAATGTTCCGTGCACAGTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGGGGAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACGCGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATCTGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTGTGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACAAGTTCAAGGCTGTGCGTAGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGATCCGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCC ]
[+] EMBL BM601411 [ CGCGCGTTTCCACCCCCGGACACGAGAACGACGAAAACATCCCCATTTGTCAGAATGTTCCGTGCACAGTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGGGGAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACGCGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATCTGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTGTGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACAAGTTCAAGGCTGTGCGTAGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGATCCGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCGTATACGGCGGGATGGCATCGATAATGGCTGAATTCGGAACGTTTCCCATCGACACCACCAAAACTCGTTTGCAAATTCAAGGGCAAAAGACTGATCGATCACACAGCGAGCTGC ]
[+] EMBL BM656557 [ ccgCGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGGGGAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACGCGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATCTGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTGTGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACAAGTTCAAGGCTGTGCGTAGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGATCCGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCGTATACGGCGGGATGGCATCGATAATGGCTGAATTCGGAACGTTTCCCATCGACACCACCAAAACTCGTTTGCAAATTCAAGGCCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACCGTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAGCTGGAGGTTTCAAAATGAGCGTAATAGAACTTGTTGTGTACGTAGACACTGAAATGTTCCTAAAACAAAGTAGCACTAGCACGTGCATGGTGC]
consensusID : consensus_7211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGCGGACGCGTGGGTGCACAGTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGGGGAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACGCGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATCTGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTGTGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACAAGTTCAAGGCTGTGCGTAGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGATCCGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCGTATACGGCGGGATGGCATCGATAATGGCTGAATTCGGAACGTTTCCCATCGACACCACCAAAACTCGTTTGCAAATTCAAGGCCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACCGTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAAAGTGTGAAGGCCCTTTACTCTGGCATATGGCCGGCAGTGCTGCGGCAGGCCACGTACGGGTACGATCAAGTTCGGCACGT]
[+] EMBL BM612449 [CCGCGGACGCGTGGGTGCACAGTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGGGGAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACGCGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATCTGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTGTGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACAAGTTCAAGGCTGTGCGTAGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGATCCGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCGTATACGGCGGGATGGCATCGATAATGGCTGAATTCGGAACGTTTCCCATCGACACCACCAAAACTCGTTTGCAAATTCAAGGCCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACCGTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAAAGTGTGAAGGCCCTTTACTCTGGCATATGGCCGGCAGTGCTGCGGCAGGCCACGTACGGGTACGATCAAGTTCGGCACGT]
consensusID : consensus_7211#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence
[CCGGCGAGGATAGTTCGGCCCGCGCGTTTCCACCCCCGGACACGAGAACGACGAAAACATCCCCATTTGTCAGAATGTTCCGTGCACAGTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACGAGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATCTGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTGTGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACAAGTTCAAGGCTGTGGGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGACCCGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCGTATACGGCGGGATGGCATCGATAATGGCAGAATTCGGAACGTTTCCCATCGACACCACCAAAACTCGTTTGCAAATTCAAGGCCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACCGTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAGGTGTGAAGGCCCTTTA]
[+] EMBL BM577118 [CCGGCGAGGATAGTTCGGCCCGCGCGTTTCCACCCCCGGACACGAGAACGACGAAAACATCCCCATTTGTCAGAATGTTCCGTGCACAGTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACGAGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATCTGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTGTGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACAAGTTCAAGGCTGTGGGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGACCCGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCGTATACGGCGGGATGGCATCGATAATGGCAGAATTCGGAACGTTTCCCATCGACACCACCAAAACTCGTTTGCAAATTCAAGGCCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACCGTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAGGTGTGAAGGCCCTTTA]
[+] EMBL BM612326 [ ccgCCACCCCCGGACACGAGAACGACGAAAACATCCCCATTTGTCAGAATGTTCCGTGCACAGTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACGAGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATCTGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTGTGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACAAGTTCAAGGCTGTGGGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGACCCGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCGTATACGGCGGGATGGCATCGATAATGGCAGAATTCGGAACGTTTCCCATCGACACCACCAAAACTCGTTTGCAAATTCAAGGCCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACCGTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAGGTGTGAAGGCCCTTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7211#0 CCGCGGACGCGTGGGCGGACGCGTGGGTTCCACCCGCGAGGATAGTTCGGCCCGCGCGTT 60
consensus_7211#2 --------------------------------CCGGCGAGGATAGTTCGGCCCGCGCGTT 28
consensus_7211#1 ------------------------------------------------------------
consensus_7211#0 TCCACCCCCGGACACGAGAACGACGAAAACATCCCCATTTGTCAGAATGTTCCGTGCACA 120
consensus_7211#2 TCCACCCCCGGACACGAGAACGACGAAAACATCCCCATTTGTCAGAATGTTCCGTGCACA 88
consensus_7211#1 ---------------------------------------CCGCGGACGCGTGGGTGCACA 21
* ** * *******
consensus_7211#0 GTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGGG 180
consensus_7211#2 GTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGG---G 145
consensus_7211#1 GTACGTTCGCAAAATTCGTCGGAAAGTTCATCCGCAGCGCCAGAACTAAACGGGGGGGGG 81
******************************************************** *
consensus_7211#0 GAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACG 240
consensus_7211#2 GAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACG 205
consensus_7211#1 GAAAGTGGGTGGTAAACCGCGCCAACTTGCAGCTGTTCCCGAGCCGTCTGGTTCATCACG 141
************************************************************
consensus_7211#0 CGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATC 300
consensus_7211#2 AGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATC 265
consensus_7211#1 CGATCCTCTTTCCTCGCTCACACACACACACGCCGGTGTCGGTCACCGGGCACACCGATC 201
***********************************************************
consensus_7211#0 TGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTG 360
consensus_7211#2 TGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTG 325
consensus_7211#1 TGTTTTTCCACCGTGACGTGCGAACGCCTCTGGTGTGTGTGTGTGCCCTTCAGGAGGCTG 261
************************************************************
consensus_7211#0 TGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACA 420
consensus_7211#2 TGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACA 385
consensus_7211#1 TGTTTACCAAAGGTTCTCGCGGGTGCTGATAGTGTGCGGTGCACCGGGAAGGGTTACACA 321
************************************************************
consensus_7211#0 AGTTCAAGGCTGTGCGTAGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGATC 480
consensus_7211#2 AGTTCAAGGCTGTG---GGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGACC 442
consensus_7211#1 AGTTCAAGGCTGTGCGTAGGCTCCCAGGGAGCGAAGGGAGCGGACGACCCCGACACGATC 381
************** **************************************** *
consensus_7211#0 CGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCG 540
consensus_7211#2 CGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCG 502
consensus_7211#1 CGGTACGGCCCGAGGGCAAGGATACGAAGATGAGCGATATACGCGACTGGCGGCCGTTCG 441
************************************************************
consensus_7211#0 TATACGGCGGGATGGCATCGATAATGGCTGAATTCGGAACGTTTCCCATCGACACCACCA 600
consensus_7211#2 TATACGGCGGGATGGCATCGATAATGGCAGAATTCGGAACGTTTCCCATCGACACCACCA 562
consensus_7211#1 TATACGGCGGGATGGCATCGATAATGGCTGAATTCGGAACGTTTCCCATCGACACCACCA 501
**************************** *******************************
consensus_7211#0 AAACTCGTTTGCAAATTCAAGGGCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACC 660
consensus_7211#2 AAACTCGTTTGCAAATTCAAGGCCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACC 622
consensus_7211#1 AAACTCGTTTGCAAATTCAAGGCCAAAAGACTGATCGATCACACAGCGAGCTGCGGTACC 561
********************** *************************************
consensus_7211#0 GTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAG-CTG-GAGGTTTCAAAAT 718
consensus_7211#2 GTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAG-GTGTGAAGGCCCTTTA- 680
consensus_7211#1 GTGGTATGACCGATGCGTTCGTGAAAATTTCCCGCCAAGAAAAGTGTGAAGGCCCTTTAC 621
***************************************** ** ** * * *
consensus_7211#0 GAGCGTAATAGAACTTGTTGTGTACGTAGACACTGAAATGTTCCTAAAACAAAGTAGCAC 778
consensus_7211#2 ------------------------------------------------------------
consensus_7211#1 TC-TGGCATATGGCCGGCAGTGC-TGCGGCAGGCCACGTACGGGTACGATCAAGTTCGGC 679
consensus_7211#0 TAGCACGTGCATGGTGC 795
consensus_7211#2 -----------------
consensus_7211#1 ACGT------------- 683
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||