cluster # 7213

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Anopheles gambiae
cluster # 7213 cluster # 7213 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7213#0 length = 739 sequences # 5

consensus_7213#1 length = 558 sequences # 1

consensusID : consensus_7213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 739
fasta sequence

                              [CCGAAGAAACCATGGCGGCCGGTCCGATAGCAGAAAGAAATCAAGATGCAACGATTTACGTTGGTGGACTGGACGATAAGGTTACGGAGACGCTGCTTTGGGAACTGTTCGTCCAGAGCGGACCCGTGGTGAACGTGCACATGCCGAAGGATCGTGTCACACAGATGCACCAGGGTTACGGGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCAAAATCATGAACATGATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCGCCCACCAGAAGAGCCTGGATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGTACGACACGTTCTCCGCCTTCGGAGTGATCCTGCAGACGCCAAAGATTATGCGCGATCCGGAGACGGGCAACTCGAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATGCGGCCATGGATGCCATGAACGGACAGTACCTTTGCAATCGCCCCATATCGGTTTCGTACGCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGGCACAGAACCCGCTGTCGCACGCGGACCGACCGCATCAGCTGTTTGCCGATGCTCCCGCCCCGCCCTCGATGCATCCGGGTATGATGGGTCATCCGATGATGCCNCCGCCCCTGCTGGCACCACCGCCGCCACCCACGAA]

[+] EMBL BM622867             [CCGAAGAAACCATGGCGGCCGGTCCGATAGCAGAAAGAAATCAAGATGCAACGATTTACGTTGGTGGACTGGACGATAAGGTTACGGAGACGCTGCTTTGGGAACTGTTCGTCCAGAGCGGACCCGTGGTGAACGTGCACATGCCGAAGGATCGTGTCACACAGATGCACCAGGGTTACGGGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCAAAATCATGAACATGATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCGCCCACCAGAAGAGCCTGGATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGTACGACACGTTCTCCGCCTTCGGAGTGATCCTGCAGACGCCAAAGATTATGCGCGATCCGGAGACGGGCAACTCGAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATGCGGCCATGGATGCCATGAACGGACAGTACCTTTGCAATCGCCCCATATCGGTTTCGTACGCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGGCACAGAACCCGCTGTCGCACGCGGACCGACCGCATCAGCTGTTTGCCGATGCTCCCGCCCCG                                                                             ]
[+] EMBL BM577063             [     ccgACCATGGCGGCCGGTCCGATAGCAGAAAGAAATCAAGATGCAACGATTTACGTTGGTGGACTGGACGATAAGGTTACGGAGACGCTGCTTTGGGAACTGTTCGTCCAGAGCGGACCCGTGGTGAACGTGCACATGCCGAAGGATCGTGTCACACAGATGCACCAGGGTTACGGGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCAAAATCATGAACATGATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCGCCCACCAGAAGAGCCTGGATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGTACGACACGTTCTCCGCCTTCGGAGTGATCCTGCAGACGCCAAAGATTATGCGCGATCCGGAGACGGGCAACTCGAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATGCGGCCATGGATGCCATGAACGGACAGTACCTTTGCAATCGCCCCATATCGGTTTCGTACGCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGGCACAGAACCCGCTGTCGCACGCG                                                                                                                    ]
[+] EMBL BX626129             [          CATGGCGGCCGGTCCGATAGCAGAAAGAAATCAAGATGCAACGATTTACGTTGGTGGACTGGACGATAAGGTTACGGAGACGCTGCTTTGGGAACTGTTCGTCCAGAGCGGACCCGTGGTGAACGTGCACATGCCGAAGGATCGTGTCACACAGATGCACCAGGGTTACGGGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCAAAATCATGAACATGATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCGCCCACCAGAAGAGCCTGGATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGTACGACACGTTCTCCGCCTTCGGAGTGATCCTGCAGACGCCAAAGATTATGCGCGATCCGGAGACGGGCAACTCGAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATGCGGCCATGGATGCCATGAACGGACAGTACCTTTGCAATCGCCCCATATCGGTTTCGTACGCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGGCACAGAACCCGCTGTCGCACGCGGACCGACCGCATCAGCTGTTTGCCGATGCTCCCGCCCCGCCCTCGATGCATCCGGGTATGATGGGTCATCCGATGATGCCNCCGCCC                             ]
[+] EMBL BM622171             [           ccGGCGGCCGGTCCGATAGCAGAAAGAAATCAAGATGCAACGATTTACGTTGGTGGACTGGACGATAAGGTTACGGAGACGCTGCTTTGGGAACTGTTCGTCCAGAGCGGACCCGTGGTGAACGTGCACATGCCGAAGGATCGTGTCACACAGATGCACCAGGGTTACGGGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCAAAATCATGAACATGATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCGCCCACCAGAAGAGCCTGGATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGTACGACACGTTCTCCGCCTTCGGAGTGATCCTGCAGACGCCAAAGATTATGCGCGATCCGGAGACGGGCAACTCGAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATGCGGCCATGGATGCCATGAACGGACAGTACCTTTGCAATCGCCCCATATCGGTTTCGTACGCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGGCACAGAACCCGCTGTCGCACGCGGACCGACCGCATCAGCTGTTTGCCGATGCTCCCGCCCC                                                                              ]
[+] EMBL BM596395             [                                                                             ccGGTTACGGAGACGCTGCTTTGGGAACTGTTCGTCCAGAGCGGACCCGTGGTGAACGTGCACATGCCGAAGGATCGTGTCACACAGATGCACCAGGGTTACGGGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCAAAATCATGAACATGATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCGCCCACCAGAAGAGCCTGGATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGTACGACACGTTCTCCGCCTTCGGAGTGATCCTGCAGACGCCAAAGATTATGCGCGATCCGGAGACGGGCAACTCGAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATGCGGCCATGGATGCCATGAACGGACAGTACCTTTGCAATCGCCCCATATCGGTTTCGTACGCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGGCACAGAACCCGCTGTCGCACGCGGACCGACCGCATCAGCTGTTTGCCGATGCTCCCGCCCCGCCCTCGATGCATCCGGGTATGATGGGTCATCCGATGATGCCACCGCCACTGCTGGCACCACCGCCGCCACCCACGAA]




>consensus_7213#0
CCGAAGAAACCATGGCGGCCGGTCCGATAGCAGAAAGAAATCAAGATGCAACGATTTACG
TTGGTGGACTGGACGATAAGGTTACGGAGACGCTGCTTTGGGAACTGTTCGTCCAGAGCG
GACCCGTGGTGAACGTGCACATGCCGAAGGATCGTGTCACACAGATGCACCAGGGTTACG
GGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCAAAATCATGAACATGA
TCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCGCCCACCAGAAGAGCCTGG
ATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGT
ACGACACGTTCTCCGCCTTCGGAGTGATCCTGCAGACGCCAAAGATTATGCGCGATCCGG
AGACGGGCAACTCGAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATG
CGGCCATGGATGCCATGAACGGACAGTACCTTTGCAATCGCCCCATATCGGTTTCGTACG
CGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGG
CACAGAACCCGCTGTCGCACGCGGACCGACCGCATCAGCTGTTTGCCGATGCTCCCGCCC
CGCCCTCGATGCATCCGGGTATGATGGGTCATCCGATGATGCCNCCGCCCCTGCTGGCAC
CACCGCCGCCACCCACGAA

consensusID : consensus_7213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [CCGCCCACGCGTCCGCCGAAGGATCTTGTCACACAGATGCACCAGGGTTACGGGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCATAAATCATGAACATGATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCACCCACCATAAGAGCCTGGATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGTACGACACGTTCTCCGCCTTCGGAGTGATCCTGCATACGCCAAAGATTATGCGCGATCCGGAGACGGGCAACTCTAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATGCGGCCATGGATGCCATGAACGGACAGCACCTTTGCTATCGCCCCATATCGGTTTCGTACGCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGGTACAGAACCCGCTGTCGCACGCGGACCGACCGCATCATCTGTTTGCCGATGCTCCCGCCCCGCCCTCGATGCATCCGGGTATGAT]

[+] EMBL BM624954             [CCGCCCACGCGTCCGCCGAAGGATCTTGTCACACAGATGCACCAGGGTTACGGGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCATAAATCATGAACATGATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCACCCACCATAAGAGCCTGGATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGTACGACACGTTCTCCGCCTTCGGAGTGATCCTGCATACGCCAAAGATTATGCGCGATCCGGAGACGGGCAACTCTAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATGCGGCCATGGATGCCATGAACGGACAGCACCTTTGCTATCGCCCCATATCGGTTTCGTACGCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGGTACAGAACCCGCTGTCGCACGCGGACCGACCGCATCATCTGTTTGCCGATGCTCCCGCCCCGCCCTCGATGCATCCGGGTATGAT]




>consensus_7213#1
CCGCCCACGCGTCCGCCGAAGGATCTTGTCACACAGATGCACCAGGGTTACGGGTTCGTC
GAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCATAAATCATGAACATGATCAAGCT
GTACGGCAAACCGATCCGTGTGAACAAGGCTTCCACCCACCATAAGAGCCTGGATGTGGG
GGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTGTACGACAC
GTTCTCCGCCTTCGGAGTGATCCTGCATACGCCAAAGATTATGCGCGATCCGGAGACGGG
CAACTCTAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGATGCGGCCAT
GGATGCCATGAACGGACAGCACCTTTGCTATCGCCCCATATCGGTTTCGTACGCGTTCAA
GAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCGGTACAGAA
CCCGCTGTCGCACGCGGACCGACCGCATCATCTGTTTGCCGATGCTCCCGCCCCGCCCTC
GATGCATCCGGGTATGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7213#0      CCGAAGAAACCATGGCGGCCGGTCCGATAGCAGAAAGAAATCAAGATGCAACGATTTACG 60
consensus_7213#1      ------------------------------------------------------------
                                                                                  

consensus_7213#0      TTGGTGGACTGGACGATAAGGTTACGGAGACGCTGCTTTGGGAACTGTTCGTCCAGAGCG 120
consensus_7213#1      ------------------------------------------------------------
                                                                                  

consensus_7213#0      GACCCGTGGTGAACGTGCACATGCCGAAGGATCGTGTCACACAGATGCACCAGGGTTACG 180
consensus_7213#1      --------CCGCCCACGCGTCCGCCGAAGGATCTTGTCACACAGATGCACCAGGGTTACG 52
                                *  *  **    *********** **************************

consensus_7213#0      GGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCA-AAATCATGAACATG 239
consensus_7213#1      GGTTCGTCGAGTTTCTGGGCGAGGAAGACGCCGACTATGCGATCATAAATCATGAACATG 112
                      ********************************************* **************

consensus_7213#0      ATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCGCCCACCAGAAGAGCCTG 299
consensus_7213#1      ATCAAGCTGTACGGCAAACCGATCCGTGTGAACAAGGCTTCCACCCACCATAAGAGCCTG 172
                      ****************************************** ******* *********

consensus_7213#0      GATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTG 359
consensus_7213#1      GATGTGGGGGCGAACATTTTCATCGGCAACCTGGATCTGGAGGTGGACGAGAAGCTGCTG 232
                      ************************************************************

consensus_7213#0      TACGACACGTTCTCCGCCTTCGGAGTGATCCTGCAGACGCCAAAGATTATGCGCGATCCG 419
consensus_7213#1      TACGACACGTTCTCCGCCTTCGGAGTGATCCTGCATACGCCAAAGATTATGCGCGATCCG 292
                      *********************************** ************************

consensus_7213#0      GAGACGGGCAACTCGAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGAT 479
consensus_7213#1      GAGACGGGCAACTCTAAGGGATTTGCTTTCATAAACTTCGCCAGCTTCGAAGCGTCGGAT 352
                      ************** *********************************************

consensus_7213#0      GCGGCCATGGATGCCATGAACGGACAGTACCTTTGCAATCGCCCCATATCGGTTTCGTAC 539
consensus_7213#1      GCGGCCATGGATGCCATGAACGGACAGCACCTTTGCTATCGCCCCATATCGGTTTCGTAC 412
                      *************************** ******** ***********************

consensus_7213#0      GCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCG 599
consensus_7213#1      GCGTTCAAGAAGGATTCGAAAGGCGAACGGCACGGATCGGCCGCAGAGCGCTTGCTGGCG 472
                      ************************************************************

consensus_7213#0      GCACAGAACCCGCTGTCGCACGCGGACCGACCGCATCAGCTGTTTGCCGATGCTCCCGCC 659
consensus_7213#1      GTACAGAACCCGCTGTCGCACGCGGACCGACCGCATCATCTGTTTGCCGATGCTCCCGCC 532
                      * ************************************ *********************

consensus_7213#0      CCGCCCTCGATGCATCCGGGTATGATGGGTCATCCGATGATGCCNCCGCCCCTGCTGGCA 719
consensus_7213#1      CCGCCCTCGATGCATCCGGGTATGAT---------------------------------- 558
                      **************************                                  

consensus_7213#0      CCACCGCCGCCACCCACGAA 739
consensus_7213#1      --------------------