cluster # 7215

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 7215 cluster # 7215 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7215#0 length = 954 sequences # 5

consensus_7215#1 length = 511 sequences # 2

consensusID : consensus_7215#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 954
fasta sequence

                              [CCGGCGGCGCCCTTTTTTTTTTTTTTTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAACAGTAGAATCAATAGTGAATAATGTTACAATCAAAATATATTACTGTGTGTTGTTCTCGAGTGGTTGCTGATTGTCCGTCGGCGTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAAGAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCACCCGGCCGTGATACTGTGCAAGCGGATAGTGGCCGATGGTAGCCTGCTGGCCATCGTTTGAGT-GGACCGGTGCGTTCGCAATGTCGCCCCCGACATACACACCTTCCAGATTCGACTCTAAATACTGGTCGGTGTTGATCGATCCGTTACGATTCAGGCTGATGCCCGAACCCTGCAGGAACTCCGTGTACAGCGTCGAACCGATGCCAAAAATGCAAATATCCGCATCGAGCAGGGTACCGTCGGTCAACTCGACCTGCTGCACCGTACCCTCCGCTCCGATGCACCGCCGGATGCCGGAATTCATCACGAACTGCACGCCCTTCTCCTCGAACAGCTCCATGACCCGCTGGCCGATCGCATCGCCAAACGATTCCTTTAGCGGAACGGCACCGCGACCGATGACCGTCACCTTGGCTACCTTGTTCACGCAGAGGG]

[+] EMBL BM656830             [CCGGCGGCGCCCTTTTTTTTTTTTTTTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAACAGTAGAATCAATAGTGAATAATGTTACAATCAAAATATATTACTGTGTGTTGTTCTCGAGTGGTTGCTGATTGTCCGTCGGCGTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAAGAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCACCCGGCCGTGATACTGTGCAAGCGGATAGTGGCCGATGGTAGCCTGCTGGCCATCGTTTGAGTGGGACCGGTGCGTTCGCAAT                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CNS09HEL             [                                                                                                                                                          AATATATTACTGTGTGTTGTTCTCGAGTGGTTGCTGATTGTCCGTCGGCGTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAAGAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCACCCGGCCGTGATACTGTGCAAGCGGATAGTGGCCGATGGTAGCCTGCTGCCCATCGTTTGAGT GGACCGGTGCGTTCGCAATGTCGCCCCCGACATACACACCTTCCAGATTCGACTCTAAATACTGGTCGGTGTTGATCGATCCGTTACGATTCAGGCTGATGCCCGAACCCTGCAGGAACTCCGTGTACAGCGTCGAACCGATGCCAAAAATGCAAATATCCGCATCGAGCAGGGTACCGTCGGTCAACTCGACCTGCTGCACCGTACCCTCCGCTCCGATGCACCGCCGGATGCCGGAATTCATCACGAACTGCACGCCCTTCTCCTCGAACAGCTCCATGACCCGCTGGCCGATCGCATCGCCAAACGATTCCTTTAGCGGAACGGCACCGCGACCGATGACCGTCACCTTGGCTACCTTGTTCACGCAGAGGG]
[-] EMBL BX615153             [                                                                                                                                                                                                           GTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACCCTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCCCGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTTTCCGCAATATCGGAACGACTTGCCGAACAGTCCCGTCCAGAAGAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCCCCCGGCCGTGATACTGTGCCAGCGGATAGTGGCCGATGGTAGCCTGCTGGCCATCGTTTGAGT GGACCGGTGCGTTCGCAATATCGCCC                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AGA285326            [                                                                                                                                                                                                                      AGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAATAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AGA284031            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTGGTCGGTGTTGATCGATCCGTTACGATTCAGGCTGATGCCCGAGCCCTGCAGGAACTCCGTGTACAGCGTCGAACCGATGCCAAAAATGCAAATATCCGCATCGAGCAGTGTACCGTCGGTCAGCTCGACCTGCTGCACCGCACCCTCCGCTCCGATGCACCGCCGGATGCCGGAATTCATCACGAACTGCACGCCCTTCTCCTCGAACAGCTCCATGACCCGCTGGCCGATCGCATCGCCAAACGATTCCTTTAGCGGAACGGCACCGCGACCGATGACCGTCACCTTGGCTACCTTGTTC          ]




>consensus_7215#0
CCGGCGGCGCCCTTTTTTTTTTTTTTTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAAC
AAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAA
CAGTAGAATCAATAGTGAATAATGTTACAATCAAAATATATTACTGTGTGTTGTTCTCGA
GTGGTTGCTGATTGTCCGTCGGCGTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGG
GCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCA
CCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAA
ACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGT
ATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAAGAATGGGACCGCTTTGA
GCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCACCCGGCCGTGATACTGTGCAAGCG
GATAGTGGCCGATGGTAGCCTGCTGGCCATCGTTTGAGTGGACCGGTGCGTTCGCAATGT
CGCCCCCGACATACACACCTTCCAGATTCGACTCTAAATACTGGTCGGTGTTGATCGATC
CGTTACGATTCAGGCTGATGCCCGAACCCTGCAGGAACTCCGTGTACAGCGTCGAACCGA
TGCCAAAAATGCAAATATCCGCATCGAGCAGGGTACCGTCGGTCAACTCGACCTGCTGCA
CCGTACCCTCCGCTCCGATGCACCGCCGGATGCCGGAATTCATCACGAACTGCACGCCCT
TCTCCTCGAACAGCTCCATGACCCGCTGGCCGATCGCATCGCCAAACGATTCCTTTAGCG
GAACGGCACCGCGACCGATGACCGTCACCTTGGCTACCTTGTTCACGCAGAGGG

consensusID : consensus_7215#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 511
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAACAAAATGAGGCTTTCGGTGGTGAATTTCTTCAAGAAAAGTGTAAATGGACACATTTTTCGCGGTAAATATCGATTGGTGAAACGGGTAACGCCTCGCTCGACCCAGACACTCATTCGAGAGTACGAACAAACGGAGGCTAACATGAAACTGCTGCTCCATCCGTACCTGTCCAAGGAACAATCCAGCGGACATGCGAAGGAGCTGGGTAAGAAGGAACAGCTGGTGGCCAAATGGCGCGCGGAACAGCTCAAGATGAAACCGCACGTCACGATAGCGGAACGATTGGCACATCTGCAGGTTAAAAATGTGTGGGATTAGCGTAACGGAAGC-TGAAACAGTATAACACCGCTGAAGGTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAACAGTAGAATCAATAGTGAATAATGTTACAATC]

[+] EMBL BM597015             [CCGCCCACGCGTCCGCCCACGCGTCCGAACAAAATGAGGCTTTCGGTGGTGAATTTCTTCAAGAAAAGTGTAAATGGACACATTTTTCGCGGTAAATATCGATTGGTGAAACGGGTAACGCCTCGCTCGACCCAGACACTCATTCGAGAGTACGAACAAACGGAGGCTAACATGAAACTGCTGCTCCATCCGTACCTGTCCAAGGAACAATCCAGCGGACATGCGAAGGAGCTGGGTAAGAAGGAACAGCTGGTGGCCAAATGGCGCGCGGAACAGCTCAAGATGAAACCGCACGTCACGATAGCGGAACGATTGGCACATCTGCAGGTTAAAAATGTGTGGGATTAGCGTAACGGAAGC TGAAACAGTATAACACCGCTGAAGGTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATG                                    ]
[+] EMBL BM650937             [       ccgtTCCGCACGCACTTCGTAACAAAATGAGGCTTTCGGTGGTGAATTTCTTCAAGAAAAGTGTAAATGGACACATTTTTCGCGGTAAATATCGATTGGTGAAACGGGTAACGCCTCGCTCGACCCAGACACTCATTCGAGAGTACGAACAAACGGAAGCCAACATGAAACTGCTGCTCCATCCGTACCTGTCCAAGGAACAATCCAGCGGACATGCGAAGGAGCTGGGTAAGAAGGAACAGCTCGTGGCCAAATGGCGCGCGGAACAGCTCAAGATGAAACCGCACGTCACGATAGCGGAACGATTGGCACACTTGCAGGTCAAAAATGTGTGGGATTAGCGTAACGGAAGCGTGAAACAGTATAACACCGCTGAAGGTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAACAGTAGAATCAATAGTGAATAATGTTACAATC]




>consensus_7215#1
CCGCCCACGCGTCCGCCCACGCGTCCGAACAAAATGAGGCTTTCGGTGGTGAATTTCTTC
AAGAAAAGTGTAAATGGACACATTTTTCGCGGTAAATATCGATTGGTGAAACGGGTAACG
CCTCGCTCGACCCAGACACTCATTCGAGAGTACGAACAAACGGAGGCTAACATGAAACTG
CTGCTCCATCCGTACCTGTCCAAGGAACAATCCAGCGGACATGCGAAGGAGCTGGGTAAG
AAGGAACAGCTGGTGGCCAAATGGCGCGCGGAACAGCTCAAGATGAAACCGCACGTCACG
ATAGCGGAACGATTGGCACATCTGCAGGTTAAAAATGTGTGGGATTAGCGTAACGGAAGC
TGAAACAGTATAACACCGCTGAAGGTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACA
AGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAAC
AGTAGAATCAATAGTGAATAATGTTACAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7215#0      CCGGCGGCGCCCTTTTTTTTTTTTTTTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAAC 60
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      AAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAA 120
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      CAGTAGAATCAATAGTGAATAATGTTACAATCAAAATATATTACTGTGTGTTGTTCTCGA 180
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      GTGGTTGCTGATTGTCCGTCGGCGTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGG 240
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      GCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCA 300
consensus_7215#1      ---------------------------------------------CCGCCCACGCGTCCG 15
                                                                   * **  **  * ** 

consensus_7215#0      CCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAA 360
consensus_7215#1      CCCACGCGTCCGAACAAAATGAGGCTTTCGGTGGTGAAT-TTCTTCAAGAAAAGTGTAAA 74
                      **  **  **        **** *   **  *        * *  *   *    ******

consensus_7215#0      ACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGT 420
consensus_7215#1      TGGACACATTTTTCGCGGT----AAATATCGATTGGTGA--AACGGGTAACGCCTCGCTC 128
                        * ***    **   **     * ** **  *   ***  * *  **   **    *  

consensus_7215#0      ATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAAGAATGGGACCGCTTTGA 480
consensus_7215#1      GACCCAGACACTCATTCGAGAGTACGAACA--AACGGAGGCTAACATGAAACTGC--TGC 184
                        **   * *      ***     ******  * **      *  ***  ** **  ** 

consensus_7215#0      GCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCACCCGGCCGTGATACTGTGCAAGCG 540
consensus_7215#1      TCCATCCGTACCTGTCCA--AGGAACAATCCAGCGGACATGCGAAGGAGCTGGGTAAGAA 242
                       *  *     * ** * *  * *  **** * **   *  **   *   *** * ***  

consensus_7215#0      GATAGTGGCCGATGG-----TAGCCTGCTGGCCATCGTTTGAGTGGACCGGTGCGTTCGC 595
consensus_7215#1      GG-AACAGCTGGTGGCCAAATGGCGCGCGGAACAGC-TCAAGATGAAACCGCACGT-CAC 299
                      *  *   ** * ***     * **  ** *  ** * *     ** * * *  *** * *

consensus_7215#0      AATGTCGCCCCCGACATACACACCTTCCAGATTCGACTCTA-AATACTGGT-CGGTGTTG 653
consensus_7215#1      GATAGCGGAAC-GATTGGCACATCTGCAGGTTAAAAATGTGTGGGATTAGCGTAACGGAA 358
                       **  **   * **    **** ** *  * *   * * *     * * *      *   

consensus_7215#0      ATCGATCCGTTACGATTCAGGCTGATGCCCGAACCCTGCAGGAACTCCGTGTACAGCGTC 713
consensus_7215#1      GCTGAAACAGTATAACACCGCTGAAGGTTCGGAGTA-AAAGGAGTTCCTTTTAT--TGTA 415
                         **  *  **  *  * *    * *  ** *      ****  *** * **    ** 

consensus_7215#0      GAACCGATGCCAAAAATGCAAATATCCGCATCGAGCAGGGTACCGTCGGTCAACTCGACC 773
consensus_7215#1      CAACAAGCATTTTACAT-CAACAATGCGT-TTGAG-AGAGTGT--TCACTCTTCTCG--- 467
                       ***         * ** ***  ** **  * *** ** **    **  **  ****   

consensus_7215#0      TGCTGCACCGTACCCTCCGCTCCGATGCACCGCCGGATGCCGGAATTCATCACGAACTGC 833
consensus_7215#1      TG-TATATGGTAACAGTAGAATCAAT--AGTGAATAATGTTACAATC------------- 511
                      ** *  *  *** *    *   * **  *  *    ***    ***              

consensus_7215#0      ACGCCCTTCTCCTCGAACAGCTCCATGACCCGCTGGCCGATCGCATCGCCAAACGATTCC 893
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      TTTAGCGGAACGGCACCGCGACCGATGACCGTCACCTTGGCTACCTTGTTCACGCAGAGG 953
consensus_7215#1      ------------------------------------------------------------
                                                                                  

consensus_7215#0      G 954
consensus_7215#1      -