These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1082 fasta sequence [AAAAATTTATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATATTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGACGGGAG-CTGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGGACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAAAAAAAACAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAAAACAAACGTT-AC-TAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTC-CC-TGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACC-C-CGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTTAAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCACTTTCCCGTCACTGCTGTACACGTACGCGTACGCCCC-CGCATGCTGCCTTCATAACTTCTATTTAGCGTAACCG] [+] EMBL CNS0955W [AAAAATTAATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATATTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGACGGGAG CTGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGGACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAAAAAAAACAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTAACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAAAACAAACGTT AC TAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTC CC TGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACC C CGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATAAAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGC AAAGAATAGCAGA ] [+] EMBL CNS09KYT [ catTTTATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATATTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGACGGGAGCCTGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGAACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTC AAAAAAAAAACAATGAGAATAACCCAGAATAAACGTGTGTAAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTAACTCTCTAACCTTAACGCAAACGGCTGATTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAG ] [+] EMBL CNS09QG5 [ TATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATATTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGACGGGAG CGGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGGACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAAAAAAAACAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAAAAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAAAACAAACGTT AC TAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTTTGTT CC TGCTCTAAACCGCTCTTACCATA ] [-] EMBL CNS0955V [ AAATTTCATGTACAACAAAGCATCGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGGGACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAATAAAAACAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCTAACCTTAATGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAATACAAACGTT AC TAGTATTTGCCTTTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTC CC TGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACC C CGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTTAAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCACTTTCCCGTCACTGCTGTACACGTACGCGTACGCCCCGCGCATGCTGCCTTCATAACTTCTATTTAG ] [-] EMBL CNS09QG4 [ AGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTTTAAAAAAACAAACGTT AC TAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTC CC TGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCCGTACCGCGCGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTTAAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCACTTTCCCGTCACTGCTGTACACGTACGCGTACGCCCC CGCATGCTGCCTTCATAACTTCTATTTAGCGTA ] [-] EMBL CNS09KYS [ TTAAAAATAAAAACGTTAACATAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCACCATGCTCTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGATTGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACC C CGCATCCGGACACTTCTAAGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAGGTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTTAAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCACTTTCCCGTCACTGCTGTACACGTACGCGTACGCCCC CGCATGCTGCCTTCATAACTTATATTTAGCGTAACCG] consensusID : consensus_7219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [ATTGTATTACTCAAAAGGTTTAAAAAAAAAAAAAAAAAAAAAAACCAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGTGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCCAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAATAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTAAAAAAAAACAAACGTTACTAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCCCTGCTCTAAACCGCTCTTACCATACTCTCTTTCGG] [-] EMBL BM627202 [ATTGTATTACTCAAAAGGTTTAAAAAAAAAAAAAAAAAAAAAAACCAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTGCCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGTGAAATAACGGATTCGTTGCATAGGGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAATTATCGAAAGTGACTCTCCAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGGCTTAATAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATTTAAAAAAAAACAAACGTTACTAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTACGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCCCTGCTCTAAACCGCTCTTACCATACTCTCTTTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7219#0 AAAAATTTATTTGGTGGATATAAGGTATATAATTACAGCTATGCTTTATGTGCTACCATA 60 consensus_7219#1 ------------------------------------------------------------ consensus_7219#0 TTCTGTACAGAATGATGAGCCCTAATAATAAGCGATCGATTGCGTTCGATCAATGGCCGA 120 consensus_7219#1 ------------------------------------------------------------ consensus_7219#0 CGGGAGCTGGGTGAGTTGAACCGGCCCCGTTTCTCTCAAATCTCATGTACAACAAAGCAT 180 consensus_7219#1 ------------------------------------------------------------ consensus_7219#0 CGCCTCCACAATCTCTGCACGAACTCCCAACGCACACCTGGGGTTCTCATCCACGTCTGG 240 consensus_7219#1 ------------------------------------------------------------ consensus_7219#0 GACCTTCACTGGGACGTTCAGGTCGGGAGGAAATTGTATTACTCAAAAGATTTCAAAAAA 300 consensus_7219#1 --------------------------------ATTGTATTACTCAAAAGGTTTAAAAAAA 28 ***************** *** ****** consensus_7219#0 AAAAAA-----------CAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTG 349 consensus_7219#1 AAAAAAAAAAAAAAAACCAATGAGAATAACCCAGAATAAACGTGTGTTAATCGAAAGCTG 88 ****** ******************************************* consensus_7219#0 CCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGCGAAATAACGGATTCGTTGCATAG 409 consensus_7219#1 CCCTAAACGGTCTTATAGTTACAAGGGGTTGAAAGGTGAAATAACGGATTCGTTGCATAG 148 ************************************ *********************** consensus_7219#0 GGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAA 469 consensus_7219#1 GGTTTTCCCGGGTAAGCTTAGCGCGCAGGCCGGGCCGTACCGTGCCGAATAAATCTCGAA 208 ************************************************************ consensus_7219#0 TTATCGAAAGTGACTCTCTAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGG 529 consensus_7219#1 TTATCGAAAGTGACTCTCCAACCTTAACGCAAACGGCTGAGTATATCCGGGTGGTGGTGG 268 ****************** ***************************************** consensus_7219#0 CTTAACAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATT 589 consensus_7219#1 CTTAATAAAGTATCGGTATGCAGAAAACCATCCCGGCAGGTTAGTTGAGCATTTCGCATT 328 ***** ****************************************************** consensus_7219#0 TTTAAAAAAACAAACGTTACTAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTA 649 consensus_7219#1 TAAAAAAAAACAAACGTTACTAGTATTTGCCTCTCTTGCTATTTGCACTATTCTTACGTA 388 * ********************************************************* consensus_7219#0 CGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCCCTGCT 709 consensus_7219#1 CGTTTGCTATACGCATTGGTTGAACAGTCGCGTTCTATTCTAGGTGAGTGTGTCCCTGCT 448 ************************************************************ consensus_7219#0 CTAAACCGCTCTTACCATACTCTCTTTGACTTTGGGTCTATGTTAAACGTGTTTTACGAT 769 consensus_7219#1 CTAAACCGCTCTTACCATACTCTCTTTCGG------------------------------ 478 *************************** consensus_7219#0 TGGTGTGCCGGGTGCCGGACTCCGGGCGAAAACCCGGTACCCCGCATCCGGACACTTCTA 829 consensus_7219#1 ------------------------------------------------------------ consensus_7219#0 AGCTAGTTCATCGTTAACGCCAGTAACGGCATACAGGCTTGCTCTATTCTTGCTATCGAG 889 consensus_7219#1 ------------------------------------------------------------ consensus_7219#0 GTGTCTCTCGAGTCGGGCAAAAGAATAGCAGAAGTCTGATATTTTAAATCTTCCCACCTT 949 consensus_7219#1 ------------------------------------------------------------ consensus_7219#0 AAGCGCTACCTGGCTATGTGCTAAAGATACTGACTCGATGTTTTAAAAATGATAAGTCAC 1009 consensus_7219#1 ------------------------------------------------------------ consensus_7219#0 TTTCCCGTCACTGCTGTACACGTACGCGTACGCCCCCGCATGCTGCCTTCATAACTTCTA 1069 consensus_7219#1 ------------------------------------------------------------ consensus_7219#0 TTTAGCGTAACCG 1082 consensus_7219#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||