These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 935 fasta sequence [AATCTGGTGCAGAAACGAAAAAAGGGAACCCCCGTGCAAGGTGAACCAATAAAACAAACCGGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGAT-GATTGTGGCCGGC-TTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCGTTCTCACTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTCGCTGTACTCGATCCACACCAAGCGCACGCTGCAGCACGTCAACCAGGAGGTTTGGTTGCTAAGCTACTACAACAACGTCTACTCGGCCGTGCTGTTCATTCCGCTCATGCTGATCAACGGGGAGGTGCAGAAGGTGGCAAACTATGAACATTTGTTCGAGGGTTGGTTCTGGGGCGTGATGACGATCGGAGGCGTTTGCGGGTTTGCCATCGGCTTTGTGACGACG] [+] EMBL BX601960 [AATCTGGTGCAGAAACGAAAAAAGGGAACCCCCGTGCAAGGTGAACCAATAAAACAAACCGGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGC ] [+] EMBL BM617957 [ ccgAACGAAAAAAGGGAACCCCCGTGCAAGGTGAACCAATAAAACAAACCGGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGAT GATTGTGGCCGGC TTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCGTTCTCACTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTCGCTGTACTCGATCCACACCAAGCGCACGCTG ] [+] EMBL BM579568 [ ccgCCCGTGCAAGGTAAACCAATAAAACAAAGCGGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAACCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCGTCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTCAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCTATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCATTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGAT GATTGTGGCCGGCTTTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCATTCTCACTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTC ] [+] EMBL BM593992 [ ccgCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGATGGATTGTGGCCGGCTTTTTGGATCGGTGTCG ] [+] EMBL AGA282321 [ GTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGAAAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATANNNACGAACAATCTCTGCC ] [+] EMBL BX616864 [ TGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGAT GATTGTGGCCGGC TTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCGTTCTCACTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTCGCTGTACTCGATCCACACCAAGCGCACGCTGCAGCACGTCAACCAGGAGGTTTGGTTGCTAAGCTACTACAACAACGTCTACTCGGCCGTGCTGTTCATTCCGCTCATGCTGATCAACGGGGAGGTGCAGAAGGTGGCAAACTATGAACATTTGTTCGAGGGTTGGTTCTGGGGCGTGATGACGATCGGAGGCGTTTGCGGGTTTGCCATCGGCTTTGTGACGACG] consensusID : consensus_7222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 854 fasta sequence [AATTTTCACTCTAGCCAGAATTCCCCAGGTTTNCGGCGTAACATGTATCAGCCATTGGAAAACGGAGAATTTATAGCACCAAATACATCCGGATAGCTGGTCGTTGTGGCTGGCCTATATGGGTCGTCTCTATACTTACCTGTATTTGTGAACAANGCCCTGCTGAGCTGGGCTCAAGCTCGATGCACCTGGCTGTTTGTGACGTGGGTTCCAGGTTGCTTACCTCGTCGACCGATATGTTTCACCATGAGCCATGCTTGAGCAAGCNGGTATCCACGGGCCTGTTCTTCCTTTTCCCGGGAGTGNGCAAATCCCGGTTCGAATAAGGNGGGANAAACCCTTTCCCTGCGAAGGGTGGCTTTCCTGCTTCATCGCGATTACTTGNTCAACCCGGGTTATTGGCACTAAGCTGACCGCACACCAAAATTCCTTACTTGGGAGCCTNGAAAAGGTTAACGGTTCCAAGCCGGTTTGGGCCATTTTCCTTAACTTAACCGCTATCCGCGGACCGGTATACCGGCTTGAGAACCCGAAACCCCGGTTGGNTACCCACAATTGGTTTAGGCCTTTGGCCTCTGGACCGGTTTAAACGGCCGCCCTTGGCTTAAANGAGGAGCGCCCAGGAAACATCGAAAGCCCNAAGTGACCCAAAATACAAANAGNGCCATGGTTTGCACCCCTTTGGTTTGGGCCTTTGGGTATGNGCTTCGNCNAACCTAGAGAACTTATNGGGTNGAGAGCCCCCGTGGCGCCATCTTNTCGACAGGGGGGAAATATCANNGAGGCTGGGTATCCNGAGAAGATTCCATNAGCGGGGCAACAAAGNGGCCACTATTGGAAACCCCCCAGGTATA] [+] EMBL AL693875 [AATTTTCACTCTAGCCAGAATTCCCCAGGTTTNCGGCGTAACATGTATCAGCCATTGGAAAACGGAGAATTTATAGCACCAAATACATCCGGATAGCTGGTCGTTGTGGCTGGCCTATATGGGTCGTCTCTATACTTACCTGTATTTGTGAACAANGCCCTGCTGAGCTGGGCTCAAGCTCGATGCACCTGGCTGTTTGTGACGTGGGTTCCAGGTTGCTTACCTCGTCGACCGATATGTTTCACCATGAGCCATGCTTGAGCAAGCNGGTATCCACGGGCCTGTTCTTCCTTTTCCCGGGAGTGNGCAAATCCCGGTTCGAATAAGGNGGGANAAACCCTTTCCCTGCGAAGGGTGGCTTTCCTGCTTCATCGCGATTACTTGNTCAACCCGGGTTATTGGCACTAAGCTGACCGCACACCAAAATTCCTTACTTGGGAGCCTNGAAAAGGTTAACGGTTCCAAGCCGGTTTGGGCCATTTTCCTTAACTTAACCGCTATCCGCGGACCGGTATACCGGCTTGAGAACCCGAAACCCCGGTTGGNTACCCACAATTGGTTTAGGCCTTTGGCCTCTGGACCGGTTTAAACGGCCGCCCTTGGCTTAAANGAGGAGCGCCCAGGAAACATCGAAAGCCCNAAGTGACCCAAAATACAAANAGNGCCATGGTTTGCACCCCTTTGGTTTGGGCCTTTGGGTATGNGCTTCGNCNAACCTAGAGAACTTATNGGGTNGAGAGCCCCCGTGGCGCCATCTTNTCGACAGGGGGGAAATATCANNGAGGCTGGGTATCCNGAGAAGATTCCATNAGCGGGGCAACAAAGNGGCCACTATTGGAAACCCCCCAGGTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7222#0 AATCTGGTGCAGAAACGAAAAAAGGGAACCCCCGTGCAAGGTGAACCAATAAAACAAACC 60 consensus_7222#1 ------------------------------------------------------------ consensus_7222#0 GGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGT 120 consensus_7222#1 -------------------------------------------------AATTTTCACTC 11 **** consensus_7222#0 GGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAA-GGAG 179 consensus_7222#1 TAGCCAG---AATTCCCCAGGTTTNCGGCGTAAC-ATGTATCAGCCATTGGAAAACGGAG 67 *** *** ** ** ******* * ******************** **** consensus_7222#0 AATTTAT-GCACCAAATACATCCGGATAGC-GGTCGTTGTGGC-GGCCTAT-TGGGTCAT 235 consensus_7222#1 AATTTATAGCACCAAATACATCCGGATAGCTGGTCGTTGTGGCTGGCCTATATGGGTCGT 127 ******* ********************** ************ ******* ****** * consensus_7222#0 CTCTATACTTACC-GTATTTGTGAACAAGGCCCTGCTGAGC-GGGCTGAAGCTCGATGCA 293 consensus_7222#1 CTCTATACTTACCTGTATTTGTGAACAANGCCCTGCTGAGCTGGGCTCAAGCTCGATGCA 187 ************* ************** ************ ***** ************ consensus_7222#0 CC--GCTGTTTGTGACGTGG-TTCCAGGT-GCTTACCTCGTCGAC-GATATGTTTCACCA 348 consensus_7222#1 CCTGGCTGTTTGTGACGTGGGTTCCAGGTTGCTTACCTCGTCGACCGATATGTTTCACCA 247 ** **************** ******** *************** ************** consensus_7222#0 TGAGC-ATGCT-GAGCAAGCGG-TATCCACGGGCCG----TCTCCTTTCCGGAGGGC--- 398 consensus_7222#1 TGAGCCATGCTTGAGCAAGCNGGTATCCACGGGCCTGTTCTTCCTTTTCCCGGGAGTGNG 307 ***** ***** ******** * ************ * * ***** * * * consensus_7222#0 --AATCC--GTTCGAT-----AGGGAAA--------CCTTCCGCAAGGTG---CTTCCGC 438 consensus_7222#1 CAAATCCCGGTTCGAATAAGGNGGGANAAACCCTTTCCCTGCGAAGGGTGGCTTTCCTGC 367 ***** ****** **** * ** * ** * **** * * ** consensus_7222#0 TCT----CGATA--CTGTTCA--CCGCCATGATAGCGACGAACAATCTCTGC-CTGAAGT 489 consensus_7222#1 TTCATCGCGATTACTTGNTCAACCCGGGTTATTGGCACTAAGCTGACCGCACACCAAAAT 427 * **** ** *** *** * * ** * * * * * ** * consensus_7222#0 ACGTCAGC-GTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTG 548 consensus_7222#1 TCCTTACTTGGGAGCCTNGAAAAGGTTAACGGTTCCAAGCCGGTTTGGGCCATTTTCCT- 486 * * * * * * * * ** * **** * ** * ** * * ** consensus_7222#0 CTGACGTACGCGCTGCT---AGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTG 605 consensus_7222#1 -TAACTTAACCGCTATCCGCGGACCGGTATACCGGCTTGAGAACCCGAAACCCCGGTTGG 545 * ** ** **** * ** * * *** ** ** * * * * ** * consensus_7222#0 ATGATTGTGGCCGGCTTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCGTTCTCA 665 consensus_7222#1 NTACCCACAATTGG--TTTAGGCCTTTGGCCTCTGGACCGGTTTAAACGGCCGCCCTTGG 603 * ** *** * * ** * * * ** * ** * consensus_7222#0 CTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTCGCTGTACTCGATCCAC 725 consensus_7222#1 CTTAAANGAGGAGCGCCCAGGAAACATCGAAAGCCCNAAGTGACCCAAAATACAAANAGN 663 ** * * * * * * * * * ** * ** * * * * * consensus_7222#0 ACCAAGCGCACGCTGCAGCACGTCAACCAGGAGGTTTGGTTGCTAAGCTACTACAACAAC 785 consensus_7222#1 GCCATGGT----TTGCACCCCTTTGGTTTGGGCCTTTGGGTA-TGNGCTTCGNCNAACCT 718 *** * **** * * * ** ***** * * *** * * * consensus_7222#0 GTCTACTCGGCCGTGCTGTTCATTCCGCTCATGCTGATCAACGGGGAGGTGCAGAAGGTG 845 consensus_7222#1 AGAGAACTTATNGGGTNGAGAGCCCCCGTGGCGCCATCTTNTCGACAGGGGGGAAATATC 778 * * * * ** * ** * *** * ** * consensus_7222#0 GCAAACTATGAACATTTGTTCGAGGGTTGGTTCTGGGGCGTGATGACGATCGGAGGCGTT 905 consensus_7222#1 ANNGAGGCTGGGTATCCNGAGAAGATTCCATN----AGCGGGGCAACAA--AGNGGCCAC 832 * ** ** ** * * *** * ** * * *** consensus_7222#0 TGCGGGTTTGCCATCGGCTTTGTGACGACG 935 consensus_7222#1 TATTGGAAACCCCCCAGGTATA-------- 854 * ** ** * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||