These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 845 fasta sequence [GACGTCCCACAAGCATAGAAATCTCTGTGTCTTTAATTGATCAATTGTGCGACCCCAAATCCGCCCAGTCACTGTCACGATAACAGTTTGTGATAACGTTCAGTTTACGGCACAACGCGCTCGAAGCAACCAGCTTTGTCAGTGGTCAGTGCGAA-TTTGGTGCGAATCAACGGAACGGTTTCCATTCCTTCACTAACCCCCCCACGCACCCACGATGGACACGCAGCGGGTGGCACTGAAGCTGAGCGACATTTCGCCAAAGTTCACGGAGGAAACGCTGGACGAGATAGTGCGGTGTGCGGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGGAAACCAACTTCACCAAGGGTGACGCGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGGACGAACCGCTGGTGGTGAATGTGGTCGTGAAAACGATCCCGAAAAATGTGGGCCGCCGGAACACGTTCCGGTCGGCGGACTTTTTCCGCAACGAGGCCAACTTTTACAACGTGGTGCTGAAGGAGTTGTACCGCTTTCAGGACGCGCGCAAACCGGCCAACCCGTTCAAGGACATTAACCCATGCTATGTGGCGTACACGGACGGGGTGAACGATTTCGTCGCGATGGAAGACCTTGGCCAGTACGGGTACAAGACGGCTTCAAGAGCCGAAGGTGTCGGACTGGAGGAGTGCAAGCGTTGCATGCGCTCGCTCGGCCGCTTTCCATGCCCTGTCGCTAGCGATGAAGGAACAGGAACCGGACCGCTTTCCACGAGATCGNCCAGCAGCACGTGGAGGAAACGTACTACAGTGCCCGGCTCAAGTC] [+] EMBL BX622110 [GACGTCCCACAAGCATAGAAATCTCTGTGTCTTTAATTGATCAATTGTGCGACCCCAAATCCGCCCAGTCACTGTCACGATAACAGTTTGTGATAACGTTCAGTTTACGGCACAACGCGCTCGAAGCAACCAGCTTTGTCAGTGGTCAGTGCGAA TTTGGTGCGAATCAACGGAACGGTTTCCATTCCTTCACTAACCCCCCCACGCACCCACGATGGACACGCAGCGGGTGGCACTGAAGCTGAGCGACATTTCGCCAAAGTTCACGGAGGAAACGCTGGACGAGATAGTGCGGTGTGCGGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGGAAACCAACTTCACCAAGGGTGACGCGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGGACGAACCGCTGGTGGTGAATGTGGTCGTGAAAACGATCCCGAAAAATGTGGGCCGCCGGAACACGTTCCGGTCGGCGGACTTTTTCCGCAACGAGGCCAACTTTTACAACGTGGTGCTGAAGGAGTTGTACCGCTTTCAGGACGCGCGCAAACCGGCCAACCCGTTCAAGGACATTAACCCATGCTATGTGGCGTACACNGACGGGGTGAACGATTTCGTCGCGATGG ] [+] EMBL BX622218 [ AGAAATCTCTGTGTCTTTAATTGATCAATTGTGCGACCCCAAATCCGCCCAGTCACTGTCACGATAACAGTTTGTGATAACGTTCAGTTTACGGCACAACGCGCTCGAAGCAACCAGCTTTGTCAGTGGTCAGTGCGAA TTTGGTGCGAATCAACGGAACGGTTTCCATTCCTTCACTAACCCCCCCACGCACCCACGATGGACACGCAGCGGGTGGCACTGAAGCTGAGCGACATTTCGCCAAAGTTCACGGAGGAAACGCTGGACGAGATAGTGCGGTGTGCGGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGGAAACCAACTTCACCAAGGGTGACGCGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGGACGAACCGCTGGTGGTGAATGTGGTCGTGAAAACGATCCCGAAAAATGTGGGCCGCCGGAACACGTTCCGGTCGGCGGACTTTTTCCGCAACGAGGCCAACTTTTACAACGTGGTGCTGAAGGAGTTGTACCGCTTTCAGGACGCGCGCAAACCGGCCAACCCGTTCAAGGACATTAACCCATGCTATGTGGCGTACACGGACGGGGTGAACGATTTCGTCGCGATGGAAGACCTTGGCCAGTACGGGTACAAGACGGCTTCAAGAGCCGAAGGTGTCGGACTGGAGGAGTGCAAGCGTTGCATGCGCTCGCTCGGCCGCTTTCCATGCCCTGTCGCTAGCGATGAAGGAACAGGAACCGGACCGCTTTCCACGAGATCGNCCAGCAGCACGTGGAGGAAACGTACTACAGTGCCCGGCTCAAGTC] [+] EMBL BM597834 [ ccgACGCGCTCGAAGCAACCAGCTTTGTCAGTGGTCAGTGCGAACTTTGGTGCGAATCAACGGAACGGTTTCCATTTCTTCACTAACCCCCCCACGCACCCACGATGGACACGCAGCGGGTGGCACTGAAGCTGAGCGACATTTCGCCAAAGTTCACGGAGGAAACGCTGGACGAGATAGTGCGGTGTGCGGGCGGGAAGCGCTGCACGGGCTGGAAGATACCGGAAACCAACTTCACCAAGGGTGACGCGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGGACGAACCGCTGGTGGTGAATGTGGTCGTGAAAACGATCCCGAAAAATGTGGGCCGCCGGAACACGTTCCGGTCGGCGGACTTTTTCCGCAACGAGGCCAACTTTTACAACGTGGTGCTGAAGGAGCTGTACCGCTTTCAGGACGCGCGCAAACCGGCCAACCCGTTCAAGGACATTAACCCATGCTATGTGGCGTACACGGACGGGGTGAACGATTTCGTCGCGATGGAAGACCTTGGCCAGTACGGGTACAAGACGGCTTCAAGAGCCGAAGGTGTCGGACTGGAGGAGTGCAAGCGTTGCATGCGCTCGCTCGGCCGC TTCCATGCCCTGTCGCTAGCGATGAAGGAACAGGAACCGGACCG ] consensusID : consensus_7232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCGAGGTTTAGTTGGACTGGAGGAGTGCAACACGTTGCATTCGCTCGTCTCGGCCGCTTCCATGCCCTGTCGCTAGCGATGAAGGAACAGGAACCGGACCGCTTTCACGAGATCGCCCAGCAGCACGTGGAGGAAACGTACTACAGTGCCCGGTCAAGTCGTGGTACAACAACTTCCTGCAGTGTGCAGATCTGATATCTGCGCGCGACGCGATGGCGCGCGAATATCCCGGCACCGAGCTGGAGCTGCACGATGGAGAAGTTTTTCGACTGCGACCTGTACGACACATGGTGTACCTGACGCACNACGCGCAACCAGAACTACGGTCATCAAACCACGGTGACTGCTGGATGCCGAACTTTCTGTTGCCACGACAGCACGCCGGCGATGCGCATGATCGACTTTCAGGCTCGACCCGCATACTGCTCGCCCAGCGCATCGAAATTGCGTTCTTCGTGTACTCCTGCACCAGACCANGGCGTTGCGCGACGCGCACTATGAGNGATCTAGCATCGGCGCGTACCACAGGAGGGCTGGCGGAGATGCTGCGCGCATCTCGGCTCCGATCCGGACACGGTCTTCCCGCGCGCCGAGCTGGAGAAGGAGATGCGCCAGTACGCCCGGTTCGGGTGCGGCATGGGCAT] [+] EMBL AL929644 [CCGAGGTTTAGTTGGACTGGAGGAGTGCAACACGTTGCATTCGCTCGTCTCGGCCGCTTCCATGCCCTGTCGCTAGCGATGAAGGAACAGGAACCGGACCGCTTTCACGAGATCGCCCAGCAGCACGTGGAGGAAACGTACTACAGTGCCCGGTCAAGTCGTGGTACAACAACTTCCTGCAGTGTGCAGATCTGATATCTGCGCGCGACGCGATGGCGCGCGAATATCCCGGCACCGAGCTGGAGCTGCACGATGGAGAAGTTTTTCGACTGCGACCTGTACGACACATGGTGTACCTGACGCACNACGCGCAACCAGAACTACGGTCATCAAACCACGGTGACTGCTGGATGCCGAACTTTCTGTTGCCACGACAGCACGCCGGCGATGCGCATGATCGACTTTCAGGCTCGACCCGCATACTGCTCGCCCAGCGCATCGAAATTGCGTTCTTCGTGTACTCCTGCACCAGACCANGGCGTTGCGCGACGCGCACTATGAGNGATCTAGCATCGGCGCGTACCACAGGAGGGCTGGCGGAGATGCTGCGCGCATCTCGGCTCCGATCCGGACACGGTCTTCCCGCGCGCCGAGCTGGAGAAGGAGATGCGCCAGTACGCCCGGTTCGGGTGCGGCATGGGCAT] consensusID : consensus_7232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [ATCGCCCGAGGTTTAACGGTTTCTTTCCTTCACTAACCCCCCACGCACCCACGATGGACACGCAGCGGGTGGCACTGAAGCTGAGCGACATTTCGCCAAAGTTCACGGAGGAAACGCTGGACGAGATTGTGCGGTGTGCGGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGGAAACCAACTTCACCAAGGGTGACGCGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGGACGAACCGCTGGTGGTGAATGTGGTCGTGAAAACGATCCCGAAGAATGTGGGCCGCCGGAACACGTTCCGGTCGGCGGACTTTTTCCGCAACGAGGCCAACTTTTACAACGTGGTGCTGAAGGAGCTGTACCGCTTTCAGGACGCGCGCAAACCGGCCAACCCGTTCAAGGACATTAACCCATGCTATGTGGCGTACACGGACGGGGTGAACGATTTCGTCGCGATGGAAGACCTTGGCCAGTACGGGTACAAGACGGCTTCGAGAGCCGAAGGTGTCGGACTGGAGGAGTGCAAAC] [+] EMBL AL930700 [ATCGCCCGAGGTTTAACGGTTTCTTTCCTTCACTAACCCCCCACGCACCCACGATGGACACGCAGCGGGTGGCACTGAAGCTGAGCGACATTTCGCCAAAGTTCACGGAGGAAACGCTGGACGAGATTGTGCGGTGTGCGGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGGAAACCAACTTCACCAAGGGTGACGCGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGGACGAACCGCTGGTGGTGAATGTGGTCGTGAAAACGATCCCGAAGAATGTGGGCCGCCGGAACACGTTCCGGTCGGCGGACTTTTTCCGCAACGAGGCCAACTTTTACAACGTGGTGCTGAAGGAGCTGTACCGCTTTCAGGACGCGCGCAAACCGGCCAACCCGTTCAAGGACATTAACCCATGCTATGTGGCGTACACGGACGGGGTGAACGATTTCGTCGCGATGGAAGACCTTGGCCAGTACGGGTACAAGACGGCTTCGAGAGCCGAAGGTGTCGGACTGGAGGAGTGCAAAC] consensusID : consensus_7232#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CATGATCGACTTTCAGCTCGCCCGCTACATGCTCGCCCGCGCTCGACATTGCGTTCTTCGTGTACTCCTGTACCAGCCAGGCGTTGCGCGACGAGCACTATGAGGATCTGCTCGGCGCGTACCACGGCGGGCTGGCGGAGATGCTGCGCGATCTCGGCTCCGATCCGGACACGGTCTTCCCGCGCGCCGAGCTGGAGCCGGAGATGCGCCAGTACGCCCGGTTCGGATGCGGCATGGGCATCGAGTCGATACCGTTCTCGCTGCTGGACGAATAGGAGGTGCCCGATCTGGACAAGAGCACGGGCGAGCAGGCGGTCCCGATCGAGCAGCTCTGGATCCTGCGCCCGATTGCCAGCCAGGCCGGCCGGCGGCGACTGA] [+] EMBL AGA282904 [CATGATCGACTTTCAGCTCGCCCGCTACATGCTCGCCCGCGCTCGACATTGCGTTCTTCGTGTACTCCTGTACCAGCCAGGCGTTGCGCGACGAGCACTATGAGGATCTGCTCGGCGCGTACCACGGCGGGCTGGCGGAGATGCTGCGCGATCTCGGCTCCGATCCGGACACGGTCTTCCCGCGCGCCGAGCTGGAGCCGGAGATGCGCCAGTACGCCCGGTTCGGATGCGGCATGGGCATCGAGTCGATACCGTTCTCGCTGCTGGACGAATAGGAGGTGCCCGATCTGGACAAGAGCACGGGCGAGCAGGCGGTCCCGATCGAGCAGCTCTGGATCCTGCGCCCGATTGCCAGCCAGGCCGGCCGGCGGCGACTGA] consensusID : consensus_7232#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [CCCCCAGGTTTAACGCTGGACGAGATAGTGCGGTGTGCGGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGGGAAACCAACTTCACCAAGGGTGACGCGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGGGACGAACCG] [+] EMBL AL694241 [CCCCCAGGTTTAACGCTGGACGAGATAGTGCGGTGTGCGGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGGGAAACCAACTTCACCAAGGGTGACGCGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGGGACGAACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7232#0 GACGTCCCACAAGCATAGAAATCTCTGTGTCTTTAATTGATCAATTGTGCGACCCCAAAT 60 consensus_7232#2 ------------------------------------------------------------ consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 -CCGAGGTTTAGTTGGACTGGAGGAGTGCAACACGTTGCATTCGCTCGTCTCGGCCGCTT 59 consensus_7232#3 ------------------------------------------------------------ consensus_7232#0 CCGCCCAGTCACTGTCACGATAACAGTTTGTGATAACGTTCAGTTTACGGCACAACGCGC 120 consensus_7232#2 ------------------------------------------------------------ consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 CCATGCCCTGTCGCTAGCGATGAAGGAACAGGAACCGGACCGCTTTCACGAGATCGCCCA 119 consensus_7232#3 ------------------------------------------------------------ consensus_7232#0 TCGAAGCAACCAGCTTTGTCAGTGGTCAGTGCGAATTTGGTGCGAATCAACGGAACGGTT 180 consensus_7232#2 ------------------------------------ATCGCCCGAG---GTTTAACGGTT 21 consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 GCAGCACGTGGAGGAAACGTACTACAGTGCCCGGTCAAGTCGTGGTACAACAACTTCCTG 179 consensus_7232#3 ------------------------------------------------------------ consensus_7232#0 TCCATTCCTTCACTAACCCCCCCACGCACCCACGATGGACACGCAGCGGGTGGCACTGAA 240 consensus_7232#2 TCT-TTCCTTCACTAACCCCCC-ACGCACCCACGATGGACACGCAGCGGGTGGCACTGAA 79 consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 CAGTGTGCAGATCTGATATCTGCGCGCGACGCGATGGCGCGCGAATATCCCGGCACCGAG 239 consensus_7232#3 ------------------------------------------------------------ consensus_7232#0 GCTGAGCGACATTTCGCCAAAGTTCACGGAGGAAACGCTGGACGAGATAGTGCGGTGTGC 300 consensus_7232#2 GCTGAGCGACATTTCGCCAAAGTTCACGGAGGAAACGCTGGACGAGATTGTGCGGTGTGC 139 consensus_7232#4 ----------------------CCCCCAGGTTTAACGCTGGACGAGATAGTGCGGTGTGC 38 consensus_7232#1 CTGGAGCTGCACGATGGAGAAGTTTTTCGACTGCGACCTGTACGACACATGGTGTACCTG 299 consensus_7232#3 ------------------------------------------------------------ consensus_7232#0 GGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGG-AAACCAACTTCACCAAGGGTGACG 359 consensus_7232#2 GGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGG-AAACCAACTTCACCAAGGGTGACG 198 consensus_7232#4 GGGCGGGAAGCGCTGCACGGGCTGGAAGATCCCGGGAAACCAACTTCACCAAGGGTGACG 98 consensus_7232#1 ACGCACNACGCGCAACCAGAACTACGGTCATCAAACCACGGTGACTGCTGGATGCCGAAC 359 consensus_7232#3 ------------------------------------------------------------ consensus_7232#0 CGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGG 419 consensus_7232#2 CGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGG 258 consensus_7232#4 CGTACCTGAGCGAGCTGTACCGCATCCAGCTGACCGGGGAGCCGGCCGAACCGGGCCGGG 158 consensus_7232#1 TTTCTGTTGCCACGACAGCACGCCGGCGATGCGCATGATCGACTTTCAGGCTCGACCCGC 419 consensus_7232#3 ---------------------------------CATGATCGACTTTCAG-CTCGCCCGCT 26 * * * * * * * ** consensus_7232#0 -ACGAACCGCTGGTGGTGAATGTGGTCGTGAAAACGATCCCGAAAAATGTGGGCCGCCGG 478 consensus_7232#2 -ACGAACCGCTGGTGGTGAATGTGGTCGTGAAAACGATCCCGAAGAATGTGGGCCGCCGG 317 consensus_7232#4 GACGAACCG--------------------------------------------------- 167 consensus_7232#1 ---ATACTGCTCGCCCAGCGCATCGAAATTGCGTTCTTCGTGTACT-CCTGCACCAGACC 475 consensus_7232#3 ---ACA-TGCTCGCCC-GCGC-TCGACATTGCGTTCTTCGTGTACT-CCTGTACCAGCC- 78 * * consensus_7232#0 AACACGTTCCGGTCGGCGGACTTTTTCCGCAACGAGGCCAACTTTTACAAC-GTGGTGCT 537 consensus_7232#2 AACACGTTCCGGTCGGCGGACTTTTTCCGCAACGAGGCCAACTTTTACAAC-GTGGTGCT 376 consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 ANGGCGTTGCGCGACGCGCACTATGAGNGATCTAGCATCGGCGCGTACCACAGGAGGGCT 535 consensus_7232#3 -AGGCGTTGCGCGACGAGCACTATGAGG-ATCTGC--TCGGCGCGTACCAC-GGCGGGCT 133 consensus_7232#0 GAAGGAGTTGTACCGCTTTCAGGACGCGCGCAAACCGGCCAACCCGTTCAAGGACATTAA 597 consensus_7232#2 GAAGGAGCTGTACCGCTTTCAGGACGCGCGCAAACCGGCCAACCCGTTCAAGGACATTAA 436 consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 GGCGGAG--ATGCTGCGCGCATCTCGGCTCCGATCCGGACACGGTCTTCCCGCGCGCCGA 593 consensus_7232#3 GGCGGAG--ATGCTGCGCG-ATCTCGGCTCCGATCCGGACACGGTCTTCCCGCGCGCCGA 190 consensus_7232#0 CCCATGCTATGTGGCGTACACGGACGGGGTGAACGATTTCGTCGCGATGGAAGACCTTGG 657 consensus_7232#2 CCCATGCTATGTGGCGTACACGGACGGGGTGAACGATTTCGTCGCGATGGAAGACCTTGG 496 consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 GCTGGAGAAGGAGATGCGCCAGTACGCCCGGTTCGGGTGCGGCATGGGCAT--------- 644 consensus_7232#3 GCTGGAGCCGGAGATGCGCCAGTACGCCCGGTTCGGATGCGGCATGGGCATCGAGTCGAT 250 consensus_7232#0 CCAGTACGGGTACAAGACGGCTTCAAGAGCCGAAGGTGTCGGACTGGAGGAGTGCAAGCG 717 consensus_7232#2 CCAGTACGGGTACAAGACGGCTTCGAGAGCCGAAGGTGTCGGACTGGAGGAGTGCAAAC- 555 consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 ------------------------------------------------------------ consensus_7232#3 ACCGTTCTCGCTGCTGGACGAATAGGAGGTGCCCGATCTGGACAAGAGCACGGGCGAGCA 310 consensus_7232#0 TTGCATGCGCTCGCTCGGCCGCTTTCCATGCCCTGTCGCTAGCGATGAAGGAACAGGAAC 777 consensus_7232#2 ------------------------------------------------------------ consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 ------------------------------------------------------------ consensus_7232#3 GGCGGTCCCGATCGAGCAGCTCTGGATCCTGCGCCCGATTGCCAGCCAGGCCGGCCGGCG 370 consensus_7232#0 CGGACCGCTTTCCACGAGATCGNCCAGCAGCACGTGGAGGAAACGTACTACAGTGCCCGG 837 consensus_7232#2 ------------------------------------------------------------ consensus_7232#4 ------------------------------------------------------------ consensus_7232#1 ------------------------------------------------------------ consensus_7232#3 GCGACTGA---------------------------------------------------- 378 consensus_7232#0 CTCAAGTC 845 consensus_7232#2 -------- consensus_7232#4 -------- consensus_7232#1 -------- consensus_7232#3 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||