These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 945 fasta sequence [CCGGGCAAGGGAGGAAAGTACGGTGGCAAAGGACAGTCCAACGAAAATGCGGACCGATACGGCAACAGCTACGGTTCGGAGGGCAGAAATCAGCAACAATCTCAGCACGGACATGGACAGGGTGCGAATGAAAACCGCCAGACCAGTGGTGGTGGTGGCGGCAAATCCGGTTCCGGATCGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCATCAACAGCAACATCAGCAGCAACATCAGCAGCAACACCATCACCACCAGCAGCAGCAGCAACACCATCAGCAGCAACGGGCACCGCAGGTAGCCTCACCGCCCGGTGTTCCAATGCCAACTGGCCCCGGTGGTCCCTCTCCTGGCGCAACGGCACCCTCGCCGGGCGTTGGTGGCCCGAAGAACTTCATGCCGCTACCGAACGGATACAATCCGTACCAGATGCAGATGGGCTACCCGAACAAGCAAACGAACGACGCCTATGCCATTAACGTGATGAAAAGCCCGCAACAGTACGATCCGATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACCACCGCATCTGGGCACTCCAGGGCCCGTTCCGCCTACTGTATCACCGGTGGGACCGAACGTGGTGCCAATGCCGGTGAGTGTCACTCCGACGGGCGTACTGGCACAACCGCAACCCGCCGTGCTCGCTACGGCACCATCTCCAGGGTCAGTGCCGGCCCACGGTACCCTGGCCCCTACCAGCATGCCGATGGCACCGGCGATGGCTCCCCCTGCTACGGCGGCCATACCGGCCGTCTATACGAACTGGAAAATTGGCGATCGATGCTTGGCCAAATACTGGGAAGATGGTGGGTTCTATACAGCGGAAATTACGGACACGTCGAAGAACACGTTCGTCGTACACTTTTCTCGAGTACGGCAACTACGAGGAGGTGCTGAAAACGGACTG] [+] EMBL BM578011 [CCGGGCAAGGGAGGAAAGTACGGTGGCAAAGGACAGTCCAACGAAAATGCGGACCGATACGGCAACAGCTACGGTTCGGAGGGCAGAAATCAGCAACAATCTCAGCACGGACATGGACAGGGTGCGAATGAAAACCGCCAGACCAGTGGTGGTGGTGGCGGCAAATCCGGTTCCGGATCGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCATCAACAGCAACATCAGCAGCAACATCAGCAGCAACACCATCACCACCAGCAGCAGCAGCAACACCATCAGCAGCAACGGGCACCGCAGGTAGCCTCACCGCCCGGTGTTCCAATGCCAACTGGCCCCGGTGGTCCCTCTCCTGGCGCAACGGCACCCTCGCCGGGCGTTGGTGGCCCGAAGAACTTCATGCCGCTACCGAACGGATACAATCCGTACCAGATGCAGATGGGCTACCCGAACAAGCAAACGAACGACGCCTATGCCATTAACGTGATGAAAAGCCCGCAACAGTACGATCCGATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACCACCGCATCTGGGCACTCCAGGGCCCGTTCCGCCTACTGTATCACCGGTGGGACCGAACGTGGTGCCAATGCCGGTGAGTGTCACTCCGACGGGCGTACTGGCACAAC ] [+] EMBL BM582888 [ ccgGCAGCAGCAACACCATCAGCAGCAACGGGCACCGCAGGTAGCCTCACCGCCCGGTGTTCCAATGCCAACTGGCCCCGGTGGTCCCTCTCCTGGCGCAACGGCACCCTCGCCGGGCGTTGGTGGCCCGAAGAACTTCATGCCGCTACCGAACGGATACAATCCGTACCAGATGCAGATGGGCTACCCGAACAAGCAAACGAACGACGCCTATGCCATTAACGTGATGAAAAGCCCGCAACAGTACGATCCGATGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACCACCGCATCTGGGCACTCCAGGGCCCGTTCCGCCTACTGTATCACCGGTGGGACCGAACGTGGTGCCAATGCCGGTGAGTGTCACTCCGACGGGCGTACTGGCACAACCGCAACCCGCCGTGCTCGCTACGGCACCATCTCCAGGGTCAGTGCCGGCCCACGGTACCCTGGCCCCTACCAGCATGCCGATGGCACCGGCGATGGCTCCCCCTGCTACGGCGGCCATACCGGCCGTCTATACGAACTGGAAAATTGGCGATCGATGCTTGGCCAAATACTGGGAAGATGGTGGGTTCTATACAGCGGAAATTACGGACACGTCGAAGAACACGTTCGTCGTACACTTTTCTCGAGTACGGCAACTACGAGGAGGTGCTGAAAACGGACTG] consensusID : consensus_7233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 787 fasta sequence [GGACACCTTTAAGAA-ACGTTCGTCGTACACTTTCTCGAGTACGGCAACTTCGAGGAGGTGCTGAAAACGGACTGTATCCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCCCGCACCGGCCCCACAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAGCAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACCACCCTGGACACGTGCCGGCACCACTGCCACCCCATCACCATCAACCGCAGATGGCGGCCGCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCACCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAGCACGGACAGCAGCGAGGAGGTGTGAAGTATCGCGAACAGCGGCCCATGTACGTTCCCCCGGCACAGCGTAAGTAGGCTGGTGCGCGGAAACATGCCGATACCATCGCTGTTCAGTAAGTAGAAGCGC] [+] EMBL BX617090 [GGACACCTTTAAGAA ACGTTCGTCGTACACTTTCTCGAGTACGGCAACTTCGAGGAGGTGCTGAAAACGGACTGTATCCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCCCGCACCGGCCCCACAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAGCAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACCACCCTGGACACGTGCCGGCACCACTGCCACCCCATCACCATCAACCGCAGATGGCGGCCGCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCACCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAGCACGGACAGCAGCGAGGAGGTGTGAAGTATCGCGAACAGCGGCCCATGTACGTTCCCCCGGCACAGCGTAAGTAGGCTGGTGCGCGGAAACATGCCGATACCATCGCTGTTCAGTAAGTAGAAGCGC] [+] EMBL BX617576 [ cgAAGAACACGTTCGTCGTACACTTTCTCGAGTACGGCAACTACGAGGAGGTGCTGAAAACGGACTGTATCCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCCCGCACCGGCCCCACAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAGCAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACCACCCTGGACACGTGCCGGCACCACTGCCACCCCATCACCATCAACCGCAGATGGCGGCCGCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCACCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGT ] [+] EMBL BX612430 [ ACGGACTGTATCCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCCCGCACCGGCCCCACAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAGCAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACCACCCTGGACACGTGCCGGCACCACTGCCACCCCATCACCATCAACCGCAGATGGCGGCCGCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCACCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAGCACGGACAGCAGCGAGGAGGTGTGAAGTATCGCGAACAGCGGCCCATGTACGTTCCCCC ] [+] EMBL AGA283665 [ GTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAGTATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGACACCCCCCGGACAGGGTCAGCTGCCGCCGGCGATGAATCAGTATCAGCCAGTAACGCCGCAGCATCACCTCCATCAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATCATCCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAGCAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAGCACGGACAGCAGCGAGGAGGTGTGAAGTATCGCGAACAGCGGCCCATGTACGTTCCCCCGGCACAGCGTAAGTAGGCTGGTGCGCGGAAACAT ] consensusID : consensus_7233#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAATCCGGTTCCGGATCGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCAGCAGCAGCAGCAGCAGCAGCAATCATCCTACGGAAATGCATCCAAGCAGTCCGGCTATCACAATCAGCAGCACCAGGGCAATACAGCGAACGGAGGCAACAACAGCAACAACAACAACAACGCTAACAATCACTACAACCAACCAACTGGCGGTAGTGGTAACCATGGTAACACTTATGGCGGCGGTAGCGGTAACACTGGCTCCAAGAACTCGAACAAAGGTGGACGTTATGGTGGAGGTAAGGATGAATCTCATAAGTACAGTGGTGTGAGTGCAACACAATCCACCGCAACTAGTGCCAGCACCAACACCAACACCACCAACTCGCAGCAATCCAAAAAGGGGAAGGGCCACGGGTCGCAGCAGCATTCCAGCGCTGCGCAGAACAAACCAGCCGAGCAGCAGGCGTCATCGTACGGTTCGTCAGGCACGGGCAAGCAGCACGGAGCCTCGAACGCTAACAGCAACAGCAAGGTGAACCAAGTGGCGGAACAGATGGGAGGCATGCACCTTGGCGGCAACAAGGCGTCGTCGGGCTACAATGCCACGAACAGTAGCAACAACAACAACACGGATCGCTGCAGTCGTCC] [+] EMBL BM586915 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAATCCGGTTCCGGATCGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCAGCAGCAGCAGCAGCAGCAGCAATCATCCTACGGAAATGCATCCAAGCAGTCCGGCTATCACAATCAGCAGCACCAGGGCAATACAGCGAACGGAGGCAACAACAGCAACAACAACAACAACGCTAACAATCACTACAACCAACCAACTGGCGGTAGTGGTAACCATGGTAACACTTATGGCGGCGGTAGCGGTAACACTGGCTCCAAGAACTCGAACAAAGGTGGACGTTATGGTGGAGGTAAGGATGAATCTCATAAGTACAGTGGTGTGAGTGCAACACAATCCACCGCAACTAGTGCCAGCACCAACACCAACACCACCAACTCGCAGCAATCCAAAAAGGGGAAGGGCCACGGGTCGCAGCAGCATTCCAGCGCTGCGCAGAACAAACCAGCCGAGCAGCAGGCGTCATCGTACGGTTCGTCAGGCACGGGCAAGCAGCACGGAGCCTCGAACGCTAACAGCAACAGCAAGGTGAACCAAGTGGCGGAACAGATGGGAGGCATGCACCTTGGCGGCAACAAGGCGTCGTCGGGCTACAATGCCACGAACAGTAGCAACAACAACAACACGGATCGCTGCAGTCGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7233#0 CCGGGCAAGGGAGGAAAGTACGGTGGCAAAGGACAGTCCAACGAAAATGCGGACCGATAC 60 consensus_7233#2 ------------------------------------------------------------ consensus_7233#1 ------------------------------------------GGACACCTTTAAGAAACG 18 consensus_7233#0 GGCAACAGCTACGGTTCGGAGGGCAGAAATCAGCAACAATCTCAGCACGGACATGGACAG 120 consensus_7233#2 ------------------------------------------------------------ consensus_7233#1 TTCGTCGTACACTTTCTCGAGTACGGCAACTTCGAGGAGGTGCTGAAAACGGACTG-TAT 77 consensus_7233#0 GGTGCGAATGAAAACCGCCAGACCAGTGGTGGTGGTGGC--GGCAAATCCGGTTCCGGAT 178 consensus_7233#2 --------------CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAATCCGGTTCCGGAT 46 consensus_7233#1 CCCCATCACGCAAGCAGCCAGCCCGGCCGCACCCGCCCCGATGGCAATCGGGTACCATCC 137 * *** * * * * * **** *** ** consensus_7233#0 CGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCAT-CAACAGCAACATCAG 237 consensus_7233#2 CGCAAAACACTGGCTCTAACCATCATAATGCGACATCCCAGCAG-CAGCAGCAGCAGCAG 105 consensus_7233#1 CG-----CACCGGCCCCA--CAGCACATGGCTCCACCGCATCAGGCGGCAGCAGCGGCAG 190 ** *** *** * * ** ** * ** ** * ** ** * ***** * *** consensus_7233#0 CAGCAA-CATCAGCAGCAACACCATCACCACCAGCAGCAGCAGCAACACCAT-CAGCAGC 295 consensus_7233#2 CAGCAATCATCCTACGGAAATGCATC----CAAGCAGTCCGGCTATCACAAT-CAGCAGC 160 consensus_7233#1 CAGCAGCCCCCGTACCGTACGCTCCCCATCCAGGCCATCCGCATCTTCCACCGCAACACC 250 ***** * * * * * ** * ** ** * consensus_7233#0 AAC--GGGCAC-CGCAGGTAGCCTCACCGCCCGGTGTTCCAATGCCAACTGGCCCCGGTG 352 consensus_7233#2 ACCA-GGGCAA-TACAGCGAACGGAGGCAACAACAGCAACAACAACAAC-AACGCTAACA 217 consensus_7233#1 ACCCTGGACACGTGCCGGCACCACTGCCACCC-CATCACCATCAACCGCAGATGGCGGCC 309 * * ** ** * * * * * * ** * * consensus_7233#0 GTCCCT-CTCCTGGCGCAACGGCACCC----TCGCCGGGCGTTGGTGGCCCGAAGAACTT 407 consensus_7233#2 ATCACTACAACCAACCAACTGGCGGTA----GTGGTAACCAT-GGTAACACTTATGGCGG 272 consensus_7233#1 GCTCCCGGTGCGTACCAAGCGCCAATGCAGGACGTTGCCCAGCACGCGCACTATGCGCAG 369 * * * * * * * * * * * consensus_7233#0 CA-TGCCGCTACCGAACGGATACAATC-CGTACCAGATGCAGATGGGCTACCCGAACAAG 465 consensus_7233#2 CGGTAGCGGTAAC-ACTGGCTCCAAG---AACTCGAACAAAGGTGGACGTTATGGTGGAG 328 consensus_7233#1 TATAAGCCGGGCCCGATGCCACCGGTCGCCGCCCCGATGCAGAC--ACCCCCCGGACAGG 427 * * * * * * ** * * * consensus_7233#0 CAAACGAACGACGCCTATGCCATTAACGTGATGAAAAGCCCGCAACAGTACGATCCGATG 525 consensus_7233#2 GTAA-GGATGA-----ATCTCATAAGTACAGTGGTGTGAGTGCAACA---CAATCCACCG 379 consensus_7233#1 GTCAGCTGCCGCCGGCGATGAATCAGTATCA-GCCAGTAACGCCGCAGCACCACCTCCAT 486 * ** * * ** ** * * * consensus_7233#0 CAGCAGCAGCAGCAGCAGCAACAGCAGCAACCACCGCATC-TGGGCACTCCA----GGGC 580 consensus_7233#2 CAAC--TAGTGCCAGCACCAACACCAACA-CCACCAACTC-GCAGCAATCCAAAAAGGGG 435 consensus_7233#1 CAGCAGCAGCAGCAGCAGCAACAGCAGCCGCCGCCGCAACAGCAACAGCATC------AT 540 ** * ** ***** ***** ** * ** ** * ** consensus_7233#0 CCGTTCCGCCTACTGTATCACCGGTGGGACCGAACGTGGTGCCAAT--GCCG----GTGA 634 consensus_7233#2 AAGGGCCACGGGTCGCAGCAGCATTCCAGCGCTGCGCAGAACAAACCAGCCGAGCAGCAG 495 consensus_7233#1 CCGCATCACCTCGCCCAACAGCAGCAGCAACATCAACAGCACCAACAGCATCAGCAACAG 600 * * * * ** * * * ** consensus_7233#0 GTGTCACTCCGACGGGCGTACTGGCACAACCGCAACCCGCCGTGCTCGCTACGGCACCAT 694 consensus_7233#2 GCGTCA-TCGTACGGTTCGTCAGGCACGGGCAAGCAGCACGGAGCCTCGAACGCTAACAG 554 consensus_7233#1 CAGCAGGGTGGACATATGGCGCAACATCATCACCAGTCACAGATGGCCCAGCAGCAGCAG 660 * ** ** * * * * * * ** consensus_7233#0 CTCCAGGGTCAGTGCCGGCCCACGGTACCCTGGCCCCTACCAG--CATGC-CGATGGCAC 751 consensus_7233#2 CAACAG---CAAGGTGAACCAA--GTGGCGGAACAGATGGGAGG-CATGCACCTTGGCGG 608 consensus_7233#1 CACGGACAGCAGCGAGGAGGTGT-GAAGTATCGCGAACAGCGGCCCATGTACGTTCCC-C 718 * ** * * * * **** * * * consensus_7233#0 CGGCGATGGCTCCCCCTGCTACGGCGGCCATACCGGCCGTCTATACGAACTGGAAAATTG 811 consensus_7233#2 CAACAAGGCGTCGTCGGGCTACAATGCCACGAACAGTAG-CAACAACAACAACACGGATC 667 consensus_7233#1 CGGCACAGCGTAAGTAGGCTGGTGCGCGGAAACATGCCG-ATACCATCGCTGTTCAGTAA 777 * * * * *** * * * * * * consensus_7233#0 GCGATCGATGCTTGGCCAAATACTGGGAAGATGGTGGGTTCTATACAGCGGAAATTACGG 871 consensus_7233#2 GCTGCAGTCGTCC----------------------------------------------- 680 consensus_7233#1 GTAGAAG-CGC------------------------------------------------- 787 * * * consensus_7233#0 ACACGTCGAAGAACACGTTCGTCGTACACTTTTCTCGAGTACGGCAACTACGAGGAGGTG 931 consensus_7233#2 ------------------------------------------------------------ consensus_7233#1 ------------------------------------------------------------ consensus_7233#0 CTGAAAACGGACTG 945 consensus_7233#2 -------------- consensus_7233#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||