These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 931 fasta sequence [CACACACAGCACACACACACACTAGGCGATATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGGCCGCTCTCTCGGTGTTCCTCCTTTTCTTCCACAGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGNTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGTCGTCGGTCGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAAGGCTTACATGACCAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGGCATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAATCCAGCCGAGGGTCAGAAAAACGCATTCTCAATACGGCTCGTTAAGGTGGCCGATATGATACGGTATGCCGGGTACTGTATAGGGAAGGTGGACCAAACCACCGGCCACTGGTCACATGGTATACAGACCGCCACACT] [+] EMBL BX623744 [CACACACAGCACACACACACACTAGGCGATATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGGCCGCTCTCTCGGTGTTCCTCCTTTTCTTCCACAGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGNTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTGGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGTGCGGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAANGCTTACATGACAAGCTTTTCCCTGGCCCTG ] [-] EMBL CNS08RRF [ ATATCGGTTTCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGTCGTCGGTCGCCCCCACGCCTTTTCTGGCGATTTATGCAGCGACCAAGGCTTAAATGACCAGCTTTTCC ] [+] EMBL CNS08RRE [ CCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGTCGTCGGTCGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAAGGCTTACATGACCAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGGCATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAATCCAGCCGAGGGTCAGAAAAACGCATTCTCAATACGGCTCGTTAAGGTGGCCGATATGATACGGTATGCCGGGTACTGTATAGGGAAGGTGGACCAAACCACCGGCCACTGGTCACATGGTATACAGACCGCCACACT] consensusID : consensus_7241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence [CCGGTAGAATAGGTAGGCTGTAGCGCACACACGGCCCATACAACACACACAGCACACACAGACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAAGGCTTACATGACAAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGGCATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAATCCAGC] [+] EMBL BM613261 [CCGGTAGAATAGGTAGGCTGTAGCGCACACACGGCCCATACAACACACACAGCACACACAGACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGCGA ] [+] EMBL BX616309 [ AACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTATCATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGCGACCAAGGCTTACATGACAAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGGCATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAATCCAGC] consensusID : consensus_7241#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 598 fasta sequence [CCGCGGACGCGTGGGAGCGCACACACGGCCCATACAACACACACAGCACACACAGACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTT-AAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAA] [+] EMBL BM623076 [CCGCGGACGCGTGGGAGCGCACACACGGCCCATACAACACACACAGCACACACAGACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACGGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTT AAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAAAGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCTGGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCATCCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGCGGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAA] [+] EMBL CNS08YAO [ tactggTGTTTACCCA CTGGTC CCGTAGTCGGAGTGTACGCCACACTCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAACAGCTGTTCCTGGGTGGCCAAACATCGTTGCCACAAAAGTACGGCCCCTGGGCTGTAATTACCGGCGGTTCGGATGGAATCGGCAAAGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGAAGCAAAGTTAAAAGCGCGTGGCCGACGAAATTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7241#1 CCGGTAGAATAGGTAGGCTGTAGCGCACACACGGCCCATACAACACACACAGCACACACA 60 consensus_7241#2 ------CCGCGGACGCGTGGGAGCGCACACACGGCCCATACAACACACACAGCACACACA 54 consensus_7241#0 -------------------------------------------CACACACAGCACACA-- 15 *************** consensus_7241#1 GACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACAC 120 consensus_7241#2 GACACACACTAGGCGAAATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACAC 114 consensus_7241#0 --CACACACTAGGCGATATGTTTATGGAGCTGGTCACCGTAGTCGGAGTGTACGCCACAC 73 ************** ******************************************* consensus_7241#1 TCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAAC 180 consensus_7241#2 TCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAAC 174 consensus_7241#0 TCTGCTGGCTGTACGAGAATCTCCGGACACCGGTGCTGCTTCTGGTGCAAGGCTTCCAAC 133 ************************************************************ consensus_7241#1 AGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTG------ 234 consensus_7241#2 AGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTG------ 228 consensus_7241#0 AGCTGTTCCTGGGTGGCCAAACATCATTGCCACAAAAGTACGGCCCCTGGGCTGGCCGCT 193 ****************************************************** consensus_7241#1 -----------------------------TAATTACGGGCGGTTCGGATGGAATCGGCAA 265 consensus_7241#2 -----------------------------TAATTACGGGCGGTTCGGATGGAATCGGCAA 259 consensus_7241#0 CTCTCGGTGTTCCTCCTTTTCTTCCACAGTAATTACGGGCGGTTCGGATGGAATCGGCAA 253 ******************************* consensus_7241#1 AGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGA 325 consensus_7241#2 AGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGA 319 consensus_7241#0 AGGCTACGCACACTACCTAGCCAGCCAAGGCATGAAGGTGTTGCTTATCGCTCGCAACGA 313 ************************************************************ consensus_7241#1 AGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAA 385 consensus_7241#2 AGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAA 379 consensus_7241#0 AGCAAAGTTAAAGCGCGTGGCCGACGAAATTATGGCCAAGCATCAGGGCGCGGAGGTCAA 373 ************************************************************ consensus_7241#1 AGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCT 445 consensus_7241#2 AGTGTTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCT 439 consensus_7241#0 AGTGNTGGTAGCAGATTTCTCCAAAGGCGAACAAATCTATGAACGGCTTGAGCAGGAGCT 433 **** ******************************************************* consensus_7241#1 GGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCAT 505 consensus_7241#2 GGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCAT 499 consensus_7241#0 GGCCGCGTTCGATATCGGTATCTTAGTGAACAACGTGGGCGTTATCAACGAAAAGCCCAT 493 ************************************************************ consensus_7241#1 CCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGC 565 consensus_7241#2 CCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGC 559 consensus_7241#0 CCAGGTCGACCGGATGGAGAAGCGTATGCTGTGGGATCTAATCAACATCAACTGCGGGGC 553 ************************************************************ consensus_7241#1 GGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTAT 625 consensus_7241#2 GGCTACCAACCTGTGCAACATTGCAGTTCCAGCGATGAA--------------------- 598 consensus_7241#0 GGCCACCAACCTGTGCAACATTGCAGTTCCAGCGATGAAAAGGCGGCACCGTGGGCTTAT 613 *** *********************************** consensus_7241#1 CATAAACATTTCCTCCCTGGCGTCGGTTGCCCCCACGCCTTATCTGGCGATTTATGCAGC 685 consensus_7241#2 ------------------------------------------------------------ consensus_7241#0 CATAAACATTTCCTCCCTGTCGTCGGTCGCCCCCACGCCTTATCTGGCGATTTATGCAGC 673 consensus_7241#1 GACCAAGGCTTACATGACAAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGG 745 consensus_7241#2 ------------------------------------------------------------ consensus_7241#0 GACCAAGGCTTACATGACCAGCTTTTCCCTGGCCCTGCGGCAAGAGGTGGCTCCGTACGG 733 consensus_7241#1 CATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAA 805 consensus_7241#2 ------------------------------------------------------------ consensus_7241#0 CATCGAATGCCAAACCGTTGCCCCGGGATACGTGCACACGAGCATGACCGAGTATCTAAA 793 consensus_7241#1 TCCAGC------------------------------------------------------ 811 consensus_7241#2 ------------------------------------------------------------ consensus_7241#0 TCCAGCCGAGGGTCAGAAAAACGCATTCTCAATACGGCTCGTTAAGGTGGCCGATATGAT 853 consensus_7241#1 ------------------------------------------------------------ consensus_7241#2 ------------------------------------------------------------ consensus_7241#0 ACGGTATGCCGGGTACTGTATAGGGAAGGTGGACCAAACCACCGGCCACTGGTCACATGG 913 consensus_7241#1 ------------------ consensus_7241#2 ------------------ consensus_7241#0 TATACAGACCGCCACACT 931 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||