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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1526 fasta sequence
[GACCACCACGGTCATTCGATGCTGTCGCTTAGTCTCGCCAGCAAAACGCCAACAGATGCATCCGCAGCTGCAACAGCAACGCTCACACTGCTGTGGTGAAACGGTGGACGCGTCACGTTTCGCCAGTGACAGCAACAAGCTGAAGCTGTTCAAATCCTTGCCCAATTTGAGCGCGAGCAGTGAAAATCTGCTTCCGTAGTGGCAAAAGCGTTGCGCGGGGAGCAAATCAATTACTTCAAGCATGAGGCTGACCACCAACCAACAGGACGCTGCAGTGTAGTAGTAGTAGTAGTAGCTGTGGGTTTAGTTGTGTAGGAAAAATGAAGGCAACGGGGGTAAGGGAAGAAACGTAAAATATTTGTGATTGTTCGCTAGAGGTAAACCAAGCGCTGTAGATGATATTTTAGCAGGGTTTTAAGCATTAGTAAGTGATCGGGATGTGTGTGAGTGTGTATGAGTGAAAGGATGTGCGGATTTATAGACTTGAAAAA--AACGAACCCTTAGGAAGGAAACAGGAAGCTGCGATCGGAAGGAGCCGGAGCGTTTGTGAGCAAATAGTGTGTATGTATGTGTGCGTGCGTGCGTGTGAACTCTAGTGATAGGAAAACCGGCGCCAATTTCTCAACTTTCCCTGTTCTTCTTGTAACCCCTCTCTGTC--TCTCTCTCTATCTATAGTAGTCACGTTTTAAC-TGACCGAACTTTGCCAAGGCCAATCTTAACTAGCAGCAAACAAACAACGCGCACTCCCTTCGACATATTTTAAACTTTCCCTCCGTTTGGGACTG-TTGGGACTGATGGGACTGATAGGTATGGCCATCGGGAATGCTGGCAGACACTGGCTGGCTGTGGCTGGCTTCCACCCTGGTTGGATGTGTGCTGTTGGATTGTGTAGATAAAGTTAAACAAAACCACTACTAGCATTAATAGATGC-AAAAAAAAAAACCAATCAAGTCAGTCGTAAATCT-CTCTCTCCTTCTCTTACTGTGTCTCAATTTCAATTCAAACACAACAGTGCAGCGCAGAGAGAAGATTTGTAGAGAATTCTTGTGCCACGCGGGGATCGTCCACGCGGGAGCAGGGGAAATGAAAATTGTGAATCGAATTTTAGCGAATTAACGTGTAGAAGCAGCAGCCAGTGTGTATTCGCACACACTCACACCGATCGGTGTGTCGTTGTATGATGCAAAAAAGCAGGATTAAAAGAGGAAGGTATCGATCGGCACACACACGCGCGCACAAGCAGCAAGGCGGAGAAGCTTTGCTCCAATTCTTCCCCCCTGTTATGTTGGGTCGGTCGGTAGTGATAAAAGCGCAAGGGACGTAAGCAAAGAAGCTTAGAATTTTAGACCCATCGGAGTTTTTTTTTTAACTGAAATTCCCTTGTTTGTATAGCGTAATGCTGCGACATACACACACACGGCATATGTATTGTGGTGTACATTTGATTCTTAGTGATAACACTGACTCAATGACTAACTGAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGCGGG]
[+] EMBL BX619000 [GACCACCACGGTCATTCGATGCTGTCGCTTAGTCTCGCCAGCAAAACGCCAACAGATGCATCCGCAGCTGCAACAGCAACGCTCACACTGCTGTGGTGAAACGGTGGACGCGTCACGTTTCGCCAGTGACAGCAACAAGCTGAAGCTGTTCAAATCCTTGCCCAATTTGAGCGCGAGCAGTGAAAATCTGCTTCCGTAGTGGCAAAAGCGTTGCGCGGGGAGCAAATCAATTACTTCAAGCATGAGGCTGACCACCAACCAACAGGACGCTGCAGTGTAGTAGTAGTAGTAGTAGCTGTGGGTTTAGTTGTGTAGGAAAAATGAAGGCAACGGGGGTAAGGGAAGAAACGTAAAATATTTGTGATTGTTCGCTAGAGGTAAACCAAGCGCTGTAGATGATATTTTAGCAGGGTTTTAAGCATTAGTAAGTGATCGGGATGTGTGTGAGTGTGTATGAGTGAAAG ]
[+] EMBL BM640749 [ ccGCAGGGTTTTAAGCATTAGTAAGTGATCGGGATGTGTGTGAGTGTGTATGAGTGAAATGATGTGCGGATTTATAGACTTGAAAAA AACGAACCCTTAGGAAGGAAACAGGAAGCTGCGATCGGAAGGAGCCGGAGCGTTTGTGAGCAAATAGTGTGTATGTATGTGTGCGTGCGTGCATGTGAACTCTAGTGATAGGAAAACTGGCGCCAATTTCTCAACTTTCCCTGTTCTTCTTGTAACCCCTCTCTGTC TCTCTCTCTATCTATAGTAGTCACGTTTTAAC TGACCGAACTTTGCCAAGGCCAATCTTAACTAGCAGCAAACAAACAACGCGCACTCCCTTCGACATATTTTAAACTTTCCCTCCGTTTGGGACTG TTGGGACTGATGGGACTGATAGGTATGGCCATCGGGAATGCTGGCAGACACTGGCTGGCTGTTGCTGGCTTCCACCCTGGTTGGATGTGTGCTGTTGGATTGTGTAGATAAAGTTAAACAAAACCACTACTAGCATTAATAGATGC AAAAAAAAAAACCAATCAAGTCAGTCGTAAATCT CTCTCTCCTTCTCTTACTGTGTCTCAATTTCAAT ]
[+] EMBL BX623168 [ TGAGTGTGTATGAGTGAAAGGATGTGCGGATTTATAGACTTGAAAAAATAACGAACCCTTAGGAAGGAAACAGGAAGCTGCGATCGGAAGGAGCCGGAGCGTTTGTGAGCAAATAGTATGTATGTATGTGTGCGTGCGTGCGTGTGAACTCTAGTGATAGGAAAACCGGCGCCAATTTCTCAACTTTCCCTGTTCTTCTTGTAACCCCTCTCNGTC TCTCTCTCTATCTATAGTAGTCACGTTTTAAC TGACCGAACTTTGCCAAGGCCAATCTTAACTAGCAGCAAACAAACAACGCGCACTCCCTTCGACATATTTTAAACTTTCCCTCCGTTTGGGACTG TTGGGACTGATGGGACTGATAGGTATGGCCATCGGGAATGCTGGCAGACACTGGCTGGCTGTGGCTGGCTTCCACCCTGGTTGGATGTGTGCTGTTGGATTGTGTAGATAAAGTTAAACAAAACCACTACTAGCATTAATAGATGC AAAAAAAAACCAATCAAGTCAGTCGTAAATCT CTCTCTCCTTCTCTTACTGTGTCTCAATTTCAATTCAAACACAACAGCGCAGCGCAGAGAGANGATTTGTAGGGAATTCTTGTGCCACGCGGGGGTCGTCCACGCGGGAGCAGGGGAAATGAAAATTGTGAATCGAATTTTAGCGAATTAACGTGTAGAAGCAGCAGCCAGTGTGTATTCGCACACACTCACACCGATCGGTGTGTCGTTGTATG ]
[+] EMBL CNS08YKL [ cAGCGAATAGTGTGTATGTATGTGTGCGTGCATGCGTGTGAACTCTAGTGATAGGAAAACCGGCGCCAATTTCTCAACTTTCCCTGTTCTTCTTGTAACCCCTCTCTGTCTGTCTCTCTCTATCTATAGTAGTCACGTTTTAACGCGACCGAACTTTGCCAAGGCCAATCTTAACTAGCAGCAAACAAACAACGCGCACTCCCTTCGACATATTTTAAACTTTCCCTCCGTTTGGGACTGATTGGGACTGATGGGACTGATAGGTATGGCCATCGGGAATGCTGGCAGACACTGGCTGGCTGTGGCTGGCTTCCACCCTGGTTGGATGTGTGCTGTTGGATTGTGTAGATAAAGTTAAACAAAACCACTACTAGCATTAATAGATGCAAAAAAAAAAAACCAATCAAGTCAGTCGTAAATCTCCTCTCTCCTTCTCTTACTGTGTCTCAATTTCAATTCAAACACAACAGTGCAGCGCAGAGAGAAGATTTGTAGAGAATTCTTGTGCCACGCGGGGATCGTCCACGCGGGAGCAGGGGAAATGAAAATTGTGAATCGAATTTTAGCGAATTAACGTGTAGAAGCAGCAG ]
[+] EMBL CNS08DU8 [ G TTGGGACTGATGGGACTGATAGGTATGG CATCGGGAATGCTGGCAGACACTGGCTGGCTGTGGCTGGCTTCCACCCTGGTTGGATGTGTGCTGTTGGATTGTGTAGATAAAGTTAAACAAAACCACTACTAGCATTAATAGATGC AAAAAAAAAAACCAATCAAGTCAGTCGTAAATCT CTCTCTCCTTCTCTTACTGTGTCTCAATTTCAATTCAAACACAACAGTGCAGCGCAGAGAGAAGATTTGTAGAGAATTCTTGTGCCACGCGGGGATCGTCCACGCGGGAGCAGGGGAAATGAAAATTGTGAATCGAATTTTAGCGAATTAACGTGTAGAAGCAGCAGCCAGTGTGTAGTCGCACACACTCACACTGATCGGTGTGTCGTTGTATGATGCAAAAAAGCAGGATTAAAAGAGGAAGGTATCGATCGGCACACACACGCGCGCACAAGCAGCAAGGCGGAGAAGCTTTGCTCCAATTCTTCCCCCCTGTTATGTTGGGTCGGTCGGTAGTGATAAAAGCGCAAGGGACGTAAGCAAAGAAGCTTAGAATTTTAGACCCATCGGAGTTTTTTTTTTAACTGAAATTCCCTTGTTTGTATAGCGTAATGCTGCGACATACACACACACGGCATATGTATTGTGGTGTACATTTGATTCTTAGTGATAACACTGACTCAATGACTAACTGAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCGGCGGG]
[-] EMBL CNS08YKM [ AGTGCAGCGCAGAGAGAAGATTTGTAGAGAATTCTTGTGCCACGCGGGGATCGTCCACGCGGGAGCGGGGGAAATGAAAATTGTGAATCGAATTTTAGCGAATTAACGTGTAGAAGCAG ]
consensusID : consensus_7245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence
[CTGTTGGCCCACTGGTTTCCCCCCGTTTGGGACTGTTGGGACTGATGGGACTGATAGGTATGGCCATCGGGAATGCTGGCAGAAACTGGCTGGCTGTGGCTGGCTTCCCCCCTGGTTGGATTTGTGCTGTTGGATTGTGTAGATAAAGTTAAACAAAACCACTACTAGCATTTATAGATGCAAAAAAAAAAACCAATCAAGTCAGTCGTAAATCTCTCTCTCCTTCTCTAACTGTTTCTCAATTTCAATTCAAAAACAACAGTGCAGCGCAGAGAGAAGATTTGTAGAGAATTCTTTTGCCACGCGGGGATCGTCCACGCGGGGGCAGGGGAAATGAAAATTGTGAATCGAATTTTAGCGAATTAACGTGTAGAAGCAGCAGCCAGTGTGTAGTCGGACAAACTCACACTGATCGGTGTGTCGTTGTATGATGCAAAAAAGCAGGATTAAAAGAGGAAGGTATCGATCGGGAAAAAAACGCGCGCACAAGCAGCAAGGCGGAGAAGCTTTGCTCCAATTCTTCCCCCCTGTTATGTTGGGTCGGTCGGTAGTGATAAAAGCGCAAGGGACGTAAGCAAAGAAGCTTAGAATTTTAGACCCATCGGAGTTTTTTTTTTAACTGAAATTCCCTTGTTTGTATAGCGTAATGCTGCGACATAAACACACACGGCATATGTATTGTGGTGTACATTTGATTCTTAGTGATAAAACTGACTC]
[-] EMBL CNS08DU9 [CTGTTGGCCCACTGGTTTCCCCCCGTTTGGGACTGTTGGGACTGATGGGACTGATAGGTATGGCCATCGGGAATGCTGGCAGAAACTGGCTGGCTGTGGCTGGCTTCCCCCCTGGTTGGATTTGTGCTGTTGGATTGTGTAGATAAAGTTAAACAAAACCACTACTAGCATTTATAGATGCAAAAAAAAAAACCAATCAAGTCAGTCGTAAATCTCTCTCTCCTTCTCTAACTGTTTCTCAATTTCAATTCAAAAACAACAGTGCAGCGCAGAGAGAAGATTTGTAGAGAATTCTTTTGCCACGCGGGGATCGTCCACGCGGGGGCAGGGGAAATGAAAATTGTGAATCGAATTTTAGCGAATTAACGTGTAGAAGCAGCAGCCAGTGTGTAGTCGGACAAACTCACACTGATCGGTGTGTCGTTGTATGATGCAAAAAAGCAGGATTAAAAGAGGAAGGTATCGATCGGGAAAAAAACGCGCGCACAAGCAGCAAGGCGGAGAAGCTTTGCTCCAATTCTTCCCCCCTGTTATGTTGGGTCGGTCGGTAGTGATAAAAGCGCAAGGGACGTAAGCAAAGAAGCTTAGAATTTTAGACCCATCGGAGTTTTTTTTTTAACTGAAATTCCCTTGTTTGTATAGCGTAATGCTGCGACATAAACACACACGGCATATGTATTGTGGTGTACATTTGATTCTTAGTGATAAAACTGACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7245#0 GACCACCACGGTCATTCGATGCTGTCGCTTAGTCTCGCCAGCAAAACGCCAACAGATGCA 60
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 TCCGCAGCTGCAACAGCAACGCTCACACTGCTGTGGTGAAACGGTGGACGCGTCACGTTT 120
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 CGCCAGTGACAGCAACAAGCTGAAGCTGTTCAAATCCTTGCCCAATTTGAGCGCGAGCAG 180
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 TGAAAATCTGCTTCCGTAGTGGCAAAAGCGTTGCGCGGGGAGCAAATCAATTACTTCAAG 240
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 CATGAGGCTGACCACCAACCAACAGGACGCTGCAGTGTAGTAGTAGTAGTAGTAGCTGTG 300
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 GGTTTAGTTGTGTAGGAAAAATGAAGGCAACGGGGGTAAGGGAAGAAACGTAAAATATTT 360
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 GTGATTGTTCGCTAGAGGTAAACCAAGCGCTGTAGATGATATTTTAGCAGGGTTTTAAGC 420
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 ATTAGTAAGTGATCGGGATGTGTGTGAGTGTGTATGAGTGAAAGGATGTGCGGATTTATA 480
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 GACTTGAAAAAAACGAACCCTTAGGAAGGAAACAGGAAGCTGCGATCGGAAGGAGCCGGA 540
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 GCGTTTGTGAGCAAATAGTGTGTATGTATGTGTGCGTGCGTGCGTGTGAACTCTAGTGAT 600
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 AGGAAAACCGGCGCCAATTTCTCAACTTTCCCTGTTCTTCTTGTAACCCCTCTCTGTCTC 660
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 TCTCTCTATCTATAGTAGTCACGTTTTAACTGACCGAACTTTGCCAAGGCCAATCTTAAC 720
consensus_7245#1 ------------------------------------------------------------
consensus_7245#0 TAGCAGCAAACAAACAACGCGCACTCCCTTCGACATATTTTAAACTTTCCCTCCGTTTGG 780
consensus_7245#1 --------------------------CTGTTGGCCCACT----GGTTTCCCCCCGTTTGG 30
* * * * * * ****** ********
consensus_7245#0 GACTGTTGGGACTGATGGGACTGATAGGTATGGCCATCGGGAATGCTGGCAGACACTGGC 840
consensus_7245#1 GACTGTTGGGACTGATGGGACTGATAGGTATGGCCATCGGGAATGCTGGCAGAAACTGGC 90
***************************************************** ******
consensus_7245#0 TGGCTGTGGCTGGCTTCCACCCTGGTTGGATGTGTGCTGTTGGATTGTGTAGATAAAGTT 900
consensus_7245#1 TGGCTGTGGCTGGCTTCCCCCCTGGTTGGATTTGTGCTGTTGGATTGTGTAGATAAAGTT 150
****************** ************ ****************************
consensus_7245#0 AAACAAAACCACTACTAGCATTAATAGATGCAAAAAAAAAAACCAATCAAGTCAGTCGTA 960
consensus_7245#1 AAACAAAACCACTACTAGCATTTATAGATGCAAAAAAAAAAACCAATCAAGTCAGTCGTA 210
********************** *************************************
consensus_7245#0 AATCTCTCTCTCCTTCTCTTACTGTGTCTCAATTTCAATTCAAACACAACAGTGCAGCGC 1020
consensus_7245#1 AATCTCTCTCTCCTTCTCTAACTGTTTCTCAATTTCAATTCAAAAACAACAGTGCAGCGC 270
******************* ***** ****************** ***************
consensus_7245#0 AGAGAGAAGATTTGTAGAGAATTCTTGTGCCACGCGGGGATCGTCCACGCGGGAGCAGGG 1080
consensus_7245#1 AGAGAGAAGATTTGTAGAGAATTCTTTTGCCACGCGGGGATCGTCCACGCGGGGGCAGGG 330
************************** ************************** ******
consensus_7245#0 GAAATGAAAATTGTGAATCGAATTTTAGCGAATTAACGTGTAGAAGCAGCAGCCAGTGTG 1140
consensus_7245#1 GAAATGAAAATTGTGAATCGAATTTTAGCGAATTAACGTGTAGAAGCAGCAGCCAGTGTG 390
************************************************************
consensus_7245#0 TATTCGCACACACTCACACCGATCGGTGTGTCGTTGTATGATGCAAAAAAGCAGGATTAA 1200
consensus_7245#1 TAGTCGGACAAACTCACACTGATCGGTGTGTCGTTGTATGATGCAAAAAAGCAGGATTAA 450
** *** *** ******** ****************************************
consensus_7245#0 AAGAGGAAGGTATCGATCGGCACACACACGCGCGCACAAGCAGCAAGGCGGAGAAGCTTT 1260
consensus_7245#1 AAGAGGAAGGTATCGATCGGGAAAAAAACGCGCGCACAAGCAGCAAGGCGGAGAAGCTTT 510
******************** * * * *********************************
consensus_7245#0 GCTCCAATTCTTCCCCCCTGTTATGTTGGGTCGGTCGGTAGTGATAAAAGCGCAAGGGAC 1320
consensus_7245#1 GCTCCAATTCTTCCCCCCTGTTATGTTGGGTCGGTCGGTAGTGATAAAAGCGCAAGGGAC 570
************************************************************
consensus_7245#0 GTAAGCAAAGAAGCTTAGAATTTTAGACCCATCGGAGTTTTTTTTTTAACTGAAATTCCC 1380
consensus_7245#1 GTAAGCAAAGAAGCTTAGAATTTTAGACCCATCGGAGTTTTTTTTTTAACTGAAATTCCC 630
************************************************************
consensus_7245#0 TTGTTTGTATAGCGTAATGCTGCGACATACACACACACGGCATATGTATTGTGGTGTACA 1440
consensus_7245#1 TTGTTTGTATAGCGTAATGCTGCGACATAAACACACACGGCATATGTATTGTGGTGTACA 690
***************************** ******************************
consensus_7245#0 TTTGATTCTTAGTGATAACACTGACTCAATGACTAACTGAAAAAAAAAAAAAAAAAAAAA 1500
consensus_7245#1 TTTGATTCTTAGTGATAAAACTGACTC--------------------------------- 717
****************** ********
consensus_7245#0 AAGGCCACATGTGCCCGAGCGGCGGG 1526
consensus_7245#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||