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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1531 fasta sequence
[GGAGCTGAACCGACTGAAAGCGATACACGAAAGCCGTTTGCGAGCCGGTGCTCAGAAGGTTCACAAACTCGAGCAACTGCTCATGATGCAAACGTTTCAGCTGCGGCAGGATAAGAAGCGTTTACAAGAGGATAACGCACGACTGCAAACAGGCATAGCGCAAGCAAAGGATCAAACTGAACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAA-AAGAGCTCAAGGACCAAAACGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCAGCGATCTGAAGGAGCGCTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAACTCAGCTCAAAGATGCACAGGCCGAACTATCGTCGAAAGACCAAGAAATTGTGCAGTTGAGAGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAA--AAAAGGAGC-TTGACTT-TGATCTGGAAATTTCACAACTCAATCG-CATTGTTATCTTCAAGGATCAGATCATCG-TGC-TGATGAACAACGA-AATTCAGA-AGTTACG-CAAGGAACTGTCTGACATTTCGATACTGCGAGGCTATGAAGGTGCA-CCGACCGGTCGATACGCGCG-TTACAAGAAAAAGCTCGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCGCAACGACAGCAACAATAACAATCAGCTTACGAATAGCAATAGCGGCAGCAACAAACCAACAGACTCTCCAACGGGTGGGGGAAACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGAT-AAGAAATTGTTTTCTGAGCTCGCAGATCTGTAACTACT-CCGACGA-GGACAAGTCG-AACA-TTATCGATGCGTACGGCA-GTGGAAAACC-GGTTGATATCACTGATATCACGC-TCGATTTGAGCAG-TCTG-CT-GCCAAACTCTCTGACTGCGACGACACATAACCCAGTGGATGATGTACCAGTCACTACTTCGGATAGCTATAATCATCACCACAGCTCATCCGACGATGATTACAAATCCATGACACCTACGCAGGAAGAGCATGTGCCGGCAGAGGCGCACGAAAAGGAATTGCACGTTTCTTCTGCCAAACCCATCGAAAGCTCGGGCCTAAAGGAAGGAAAGCATCAGCACAATAGTGTTGACGAGCTAGAACGGCTTAACCGGGAGCTAGCAGCATGCCGGGAATGCTTCGAACAGGAAAAAGCGAAATGGGCAGACGAAAAGGAAAAGGTGCTGATCTATCAGCGGCAGTTGCAGAAAAATTATGTCGAAATGTGCAAGCGCACACAGCTGCTCGAGGAGCAGCTCAAGACTATGCAGATAGAACAAGGTCATCGTGACTCTAGTCGAAACTAGAGCCCATTTAGACAATTGTGCTACGTCTATACCAAGACGAGCACGGCTATTAACGTANGTTTCCAAACGGACGTGAGCGTTT]
[+] EMBL BX620776 [GGAGCTGAACCGACTGAAAGCGATACACGAAAGCCGTTTGCGAGCCGGTGCTCAGAAGGTTCACAAACTCGAGCAACTGCTCATGATGCAAACGTTTCAGCTGCGGCAGGATAAGAAGCGTTTACAAGAGGATAACGCACGACTGCAAACAGGCATAGCGCAAGCAAAGGATCAAACTGAACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAA AAGAGCTCAAGGACCAAAACGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCAGCGATCTGAAGGAGCGCTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAACTCAGCTCAAAGATGCACAGGCCGAACTATCGTCGAAAGACCAAGAAATTGTGCAGTTGAGAGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAA AAAAGGAGC TTGACTT TGATCTGGAAATTTCACAACTCAATCG CATTGTTATCTTCAAGGATCAGATCATCG TGC TGATGAACAACGA AATTCAGA AGTTACG CAAGGAACTGTCTGACATTTCGATACTGCGANGCTATGAANGTGCACCCGACCGGTCGATACGCGCGTTTACNAG AAAAGCTCGAGCTCGT ]
[+] EMBL BX625607 [ CAAAGGATCAAACTGAACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAAGAAGAGCTCAAGGACCAAAACGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCNGCGATCTGAAGGAGCGCTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAACTCANCTCAAAGATGCACAGGNCGAACTATCGTCGAAAGACCAAGAAATTGTGCAGTTGANAGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAA AAAAGGAGC TTGACTT TGATCTGGAAATTTCACNACTCAATCG CNTTGTTATCTTCAAGGANCAGATCNTCG TGC TGATGAACAACGA NATTCAGA AGTTACG CAAGGAACTGTCTGACATTTCGATACTGCGAGGCTATGAAGGTGCN CCGACCGGTCGATACGCGCG TTACAAGAAAAAGCTCGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCTCAACGACAGCAACAATAACTAT ]
[+] EMBL BX623120 [ AAAGGATCAAACTGAACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAA AAGAGCTCAAGGAGCAAAACGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCAGCGATCTGAAGGAGCGCTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAACTCAGCTCAAAGATGCACAGGCCGAACTATCGTCGAAAGACCAGGAAATTGTGCAGTTGAGAGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAA AAAAGGAGC TTGACTT TGATCTGGAAATTTCACAACTCAATCG CATTGTTATCTTCAAGGATCAGATCATCG TGC TGATGAACAACGA AATTCAGA AGTTACG CAAGGAACTGTCTGACATTTCGATACTGCGAGGCTATGAAGGTGCA CCGACCGGTCGATACGCGCG TTACAAGAAAAAGCTCGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCGCAACGACAGCAACAATAACAATCAGCTTACGAATAGCAATAGCGGCAGCAACAAACCAACAGACTCTCCAACGGGTGGGGGAAACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGATNAAGAAATTGTTTTTTGAGCTCGCAGATCTGTAACTACT CCGACGA NGACAAGTCG AACA TTAT ]
[+] EMBL BX619437 [ AAAGTCTGAGATTANNAACAGGAGCGTTGACTTATGATCTGGAAATTTCACAACTCAATCGACATTGTTATTTACAAGGATCAGATCATCGCTGCNTGATGAACAACGANAATTCAGAGAGTTACGNCAAGGAACTGTCTGACATTTCGATACTGCGAGGCTATGAAGGTGCA CCGACCGGTCGATACGCGCG TTACAAGAAAAAGCTCGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCGCAACGACAGCAACAATAACAATCAGCTTACGAATAGCAATAGCGGCAGCAACAAACCAACAGACTCTCCTACGGGT GGGGAAACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGAT AAGAAATTGTTTCCTGAGCTCGCAGATCTGTAACTACTCCCGACGAGGGACAAGTCG AACATTTATCGATGCCTACNGCAGGTGGAAAACCGGGTTGATATCACTGATATCACGCTTNGATTTGAGCAGCCCTGCCTNGCCAAAC ]
[+] EMBL BX623887 [ AACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGAT AAGAAATTG TTTCTGAGCTCGCAGATCTGTAACTACT CCGACGA GGAAAGGTCGAAACA TTATCGATGCGTACGGCA GTGGAAAACC GGTTGATATCACTGATATCACGC TCGATTTGAGCAG TCTG CT GCCAAACTCTCTGACTGCGACGACACATAACCCAGTGGATGATGTACCAGTCACTACTTCGGATAGCTATAATCATCACCACAGCTCATCCGACGATGATTACAAATCCATGACACCTACGCAGGAAGAGCATGTGCCGGCAGAGGCGCACGAAAAGGAATTGCACGTTTCTTCTGCCAAACCCATCGAAAGCTCGGGCCTAAAGGAAGGAAAGCATCAGCACAATAGTGTTGACGAGCTAGAACGGCTTAACCGGGAGCTAGCAGCATGCCGGGAATGCTTCGAACAGGAAAAAGCGAAATGGGCAGACGAAAAGGAAAAGGTGCTGATCTATCAGCGGCAGTTGCAGAAAAATTATGTCGAAATGTGCAAGCGCACACAGCTGCTCGAGGAGCAGCTCAAGACTATGCAGATAGAACAAGGTCATCGTGACTCTAGTCGAAACTAGAGCCCATTTAGACAATTGTGCTACGTCTATACCAAGACGAGCACGGCTATTAACGTANGTTTCCAAACGGACGTGAGCGTTT]
[+] EMBL BX622632 [ CGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGAT AAGAAATTG TTTCTGAGCTCGCAGATCTGTAACTACT CCGACGA GGACAAGTCG AACA TTATCGATGCGTACGGCA GTGGAAAACC GGTTGATATCACTGATATCACGC TCGATTTGAGCAG TCTG CT GCCAAACTCTCTGACTGCGACGACACATAACCCAGTGGATGATGTACCAGTCACTACTTCGGATAGCTATAATCATCACCACAGCTCATCCGACGATGATTACAAATCCATGACACCTACGCAGGAAGAGCATGTGCCGGCAGAGGCGCACGAAAAGGAATTGCACGTTTCTTCTGCCAAACCCATCGAAAGCTCGGGCCTAAAGGAAGGAAAGCATCAGCACAATAGTGTTGACGAGCTAGAACGGCTTAACCGGGAGCTAGCAGCATGCCGGGAATGCTTCGAACAGGAAAAAGCGAAATGGGCAGACGAAAAGGAAAAGGTGCTGATCTATCAGCGGCAGTTGCAGAAAAATTATGTCGAAATGTGCAAGCGCACACAGCTGCTCGAGGAGCAGCTCAAGACTATGCAGATAGAACAAGGTCATCGTGACTCTAGTCGAAACTAGAGCCCATTTAGACNATTGTGCTACGTCTATACCAAGACGAGCACGGC ]
consensusID : consensus_7247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 88 fasta sequence
[TCGCCCCGAGGCGTTTGAAAGACCAGAATGTGCAGTTGAGAGCAGACGTGAAGCTGCACACTATGACGACATTAGTTTGAAAAAGTCT]
[+] EMBL AL933286 [TCGCCCCGAGGCGTTTGAAAGACCAGAATGTGCAGTTGAGAGCAGACGTGAAGCTGCACACTATGACGACATTAGTTTGAAAAAGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7247#0 GGAGCTGAACCGACTGAAAGCGATACACGAAAGCCGTTTGCGAGCCGGTGCTCAGAAGGT 60
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 TCACAAACTCGAGCAACTGCTCATGATGCAAACGTTTCAGCTGCGGCAGGATAAGAAGCG 120
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 TTTACAAGAGGATAACGCACGACTGCAAACAGGCATAGCGCAAGCAAAGGATCAAACTGA 180
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 ACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAAAAGAGCTCAAGGACCAAAA 240
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 CGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCAGCGATCTGAAGGAGCG 300
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 CTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAAC 360
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 TCAGCTCAAAGATGCACAGGCCGAACTATCGTCGAAAGACCAAGAAATTGTGCAGTTGAG 420
consensus_7247#1 ---------------TCGCCCCGAGGCGT--TTGAAAGACCAGAA---TGTGCAGTTGAG 40
* **** * * ********* * ************
consensus_7247#0 AGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAAAAAA 480
consensus_7247#1 AGCAGACGTGAAGCTGCA-CACTATGACGACATTAGTTTGAAAAAGTCT----------- 88
****************** ******************************
consensus_7247#0 GGAGCTTGACTTTGATCTGGAAATTTCACAACTCAATCGCATTGTTATCTTCAAGGATCA 540
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 GATCATCGTGCTGATGAACAACGAAATTCAGAAGTTACGCAAGGAACTGTCTGACATTTC 600
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 GATACTGCGAGGCTATGAAGGTGCACCGACCGGTCGATACGCGCGTTACAAGAAAAAGCT 660
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 CGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCGCAACGACAGCAACAATAACAA 720
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 TCAGCTTACGAATAGCAATAGCGGCAGCAACAAACCAACAGACTCTCCAACGGGTGGGGG 780
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 AAACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAA 840
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 AGAACTATTTCAACAGCAAGCTCGAAATGGATAAGAAATTGTTTTCTGAGCTCGCAGATC 900
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 TGTAACTACTCCGACGAGGACAAGTCGAACATTATCGATGCGTACGGCAGTGGAAAACCG 960
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 GTTGATATCACTGATATCACGCTCGATTTGAGCAGTCTGCTGCCAAACTCTCTGACTGCG 1020
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 ACGACACATAACCCAGTGGATGATGTACCAGTCACTACTTCGGATAGCTATAATCATCAC 1080
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 CACAGCTCATCCGACGATGATTACAAATCCATGACACCTACGCAGGAAGAGCATGTGCCG 1140
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 GCAGAGGCGCACGAAAAGGAATTGCACGTTTCTTCTGCCAAACCCATCGAAAGCTCGGGC 1200
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 CTAAAGGAAGGAAAGCATCAGCACAATAGTGTTGACGAGCTAGAACGGCTTAACCGGGAG 1260
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 CTAGCAGCATGCCGGGAATGCTTCGAACAGGAAAAAGCGAAATGGGCAGACGAAAAGGAA 1320
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 AAGGTGCTGATCTATCAGCGGCAGTTGCAGAAAAATTATGTCGAAATGTGCAAGCGCACA 1380
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 CAGCTGCTCGAGGAGCAGCTCAAGACTATGCAGATAGAACAAGGTCATCGTGACTCTAGT 1440
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 CGAAACTAGAGCCCATTTAGACAATTGTGCTACGTCTATACCAAGACGAGCACGGCTATT 1500
consensus_7247#1 ------------------------------------------------------------
consensus_7247#0 AACGTANGTTTCCAAACGGACGTGAGCGTTT 1531
consensus_7247#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||