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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1552 fasta sequence
[GGCCGTGGAGGAGACGTGCTTTTCCTGTGTTGAAGATGCCGCTCGCGGACACTGTCTGCTTTTGCTGGGCCTGCGAGATTGCTTTGTTTTCCGCACTAAAGTGGTCACTGTGTACTTTCCGACTGTGAGCTGCAATGTTGTTTGCCTCTGCCTGCTGAAAGTCTCCCATTTTTAACGACCGGGCTTCCTTCAGTATTGCACCCTTCTCCTCCGCGGTTACACCGTCCACCTCCATCCGGCTGCTCGTGGCGGCGAGGGCGGCCTGCTCCTGGTACTGCAGGTCGCCCGCCTGCAGCTTCTTCGATTCGGCCGAGTTGATAGTGGCCTGCTCGCTGCTGAACCCGTCCGTCGTTA-CCTTCGTCTTCGACTCGGACGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGGCGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGAGGATGCCGCCGCTGCCCCCACCATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGGAAAGGTGATCGTCATCGGTTTCGGAGTCGGGAAACGTTACCAGCGGGTCGGCCCCCTGAGGATCGTCGAGGCTGTCCATCGAGGAGCGGAGCCTTGACTTGATATCGTTGATTTTGGACGACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAGGTCGACGTCGTGGTCGATAGATTCTGGGACGTGCTGCTGCTGCTGC------TACTATGACCCATCATGTTCTTCATCTCGGCGATGGAGTTTTGCATCTCGCCCAGGCCCTGCTTGACGGCGGCCG-CGACGTTGTGCTGCTGGAGGAGGAGGACGACGTTAGGGACGACATACGCTGCGTGGAGGAGGAACTCTTCTCCACATGCTTCGTCGTGGTGCTGGAGGTGGACGACGACAACTTGGAGCTTTTGCTGCTGCTACTGCTCCTGCTGTTGAGTAACTGTAAATGGACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTG-TTGATTAATAG-TTTGCGTCCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTTTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCGTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCGTCTGCGACAAGTTCGTGCTGATCGTTCGTTCGTTCTGGGGGTACTCCAATAGGCCAACAGTTCTCGAG]
[+] EMBL CNS08ORF [GGCCGTGGAGGAGACGTGCTTTTCCTGTGTTGAAGATGCCGCTCGCGGACACTGTCTGCTTTTGCTGGGCCTGCGAGATTGCTTTGTTTTCCGCACTAAAGTGGTCACTGTGTACTTTCCGACTGTGAGCTGCAATGTTGTTTGCCTCTGCCTGCTGAAAGTCTCCCATTTTTAACGACCGGGCTTCCTTCAGTATTGCACCCTTCTCCTCCGCGGTTACACCGTCCACCTCCATCCGGCTGCTCGTGGCGGCGAGGGCGGCCTGCTCCTGGTACTGCAGGTCGCCCGCCTGCAGCTTCTTCGATTCGGCCGAGTTGATAGTGGCCTGCTCGCTGCTGAACCCGTCCGTCGTTA CCTTCGTCTTCGACTCGGACGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGGCGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGAGGATGCCGCCGCTGCCCCCACCATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGGAAAGGTGATCGTCATCGGTTTCGGAGTCGGGAAACGTTACCAGCGGGTCGGCCCCCTGAGGATCGTCGAGGCTGTCCATCGAGGAGCGGA CCTTGACTTGATATCGTTGATTTTGGACGACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAGGTCGACGTCGTGGTCGATAGATTCTGGGACGTGCTGCTGCTGCTGC TACTATGACCCATCATGTTCTTCATCTCGGCGATGGAGTTTTGCATCTCGCCCAGGCCCTGCTTGACGGCGGCCG CGACGTTGTGCTGCTGGAGGAGGAGGACGACGTTAGGGACGACATACGCTGCGTGGAGGAGGAACTCTTCTCCACATGCTTCGTCGTGGTGCTGGAGGTGGACGACGACAACTTGGAGCTTTTGCTGCTGCTACTGCTCCTGCTGTTGAGTAACTGTAAATGGACGGACGCTCACGGGTTCACA ]
[-] EMBL CNS08ORE [ CTGCAGCTTCTTCGATTCGGCCGAGTTGATAGTGGCCTGCTCGCTGCTGAACCCGTCCGTCGTTACCCTTC TCTTCGACTCGGACGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGGCGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGAGGATGCCGCCGCTGCCCCCACCATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGGAAAGGTGATCGTCATCGGTTTCGGAGTC GGAAACGTTACCAGCGGGTCGGCCCCCTGAGGATCGTCGAGGCTGTCCATCGAGGAGCGGAGCCTTGACTTGATATCGTTGATTTTGGACGACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAGGTCGACGTCGTGGTCGATAGATTCTGGGACGTGCTGCTGCTGCTGC TACTATGACCCATCATGTTCTTCATCTCGGCGATGGAGTTTTGCATCTCGCCCAGGCCCTGCTTGACGGCGGCCGCCGACGTTGTGCTGCTGGAGGAGGAGGACGACGTTAGGGACGACATACGCTGCGTGGAGGAGGAACTCTTCTCCACATGCTTCGTCGTGGTGCTGGAGGTGGACGACGACAGCTTGGAGCTTTTGCTGCTGCTACTGCTCCTGCTGTTGAGTAACTGTAAATGGACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTG TTGATTAATAG TTTGCGTC ]
[-] EMBL AGA281060 [ CGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGGCGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGAGGATGCCGCCGCTACCCCCACTATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGGAAAGGTGATCGTCATCGGTTTCGGAGTCGGGAAACGTTACCAGCGGATCGGCTCCCTGAGGATCGTCGAGGCTGTCCATCGAGGAGCGGAGCCTTGACTTGATATCGTTGATTTTGGACGACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAAGTCGACGTCGTGGTCGATAGATTCTGGGATGTGCTGCTGCTGCTGCTGCTGGTGCTATGACCCATCATGTTCTTCATCTCGGCGATGGAGTTTTGCATCTCGCCCAGGCCC ]
[+] EMBL CNS08INE [ ACGCTCACGGGTTCACAGCAGGGAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACAAAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTTATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTTTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCGTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCGTCTGCGACAAGTTCGTGCTGATCGTTCGTTCGTTCTGGGGGTACTCCAATAGGCCAACAGTTCTCGAG]
consensusID : consensus_7252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 577 fasta sequence
[CCCGGGAAAAGGGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTGTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCGTTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCTCTGCGACAAGTTCGTGCTGATCGTTCGTTCGTT]
[-] EMBL CNS08VGV [CCCGGGAAAAGGGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTGTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCGTTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCTCTGCGACAAGTTCGTGCTGATCGTTCGTTCGTT]
[-] EMBL CNS08IND [CCCGGGCACATGTGGCC TTTTTTTTTTTTTTTTTTTTTTTTTTACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTGTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCG TTTTTTTTTGTTCTTCGGTCTGTTACTTTT ]
[+] EMBL CNS08VGW [ CTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGGAAGTTATGGTTTCGATCGTTTTAGTTTCCGGGTTTAATTAAAAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTTTTGGAGTTTGAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7252#0 GGCCGTGGAGGAGACGTGCTTTTCCTGTGTTGAAGATGCCGCTCGCGGACACTGTCTGCT 60
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 TTTGCTGGGCCTGCGAGATTGCTTTGTTTTCCGCACTAAAGTGGTCACTGTGTACTTTCC 120
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 GACTGTGAGCTGCAATGTTGTTTGCCTCTGCCTGCTGAAAGTCTCCCATTTTTAACGACC 180
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 GGGCTTCCTTCAGTATTGCACCCTTCTCCTCCGCGGTTACACCGTCCACCTCCATCCGGC 240
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 TGCTCGTGGCGGCGAGGGCGGCCTGCTCCTGGTACTGCAGGTCGCCCGCCTGCAGCTTCT 300
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 TCGATTCGGCCGAGTTGATAGTGGCCTGCTCGCTGCTGAACCCGTCCGTCGTTACCTTCG 360
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 TCTTCGACTCGGACGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGG 420
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGA 480
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 GGATGCCGCCGCTGCCCCCACCATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGG 540
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 AAAGGTGATCGTCATCGGTTTCGGAGTCGGGAAACGTTACCAGCGGGTCGGCCCCCTGAG 600
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 GATCGTCGAGGCTGTCCATCGAGGAGCGGAGCCTTGACTTGATATCGTTGATTTTGGACG 660
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 ACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAGGTCGACGTCGTGGTCG 720
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 ATAGATTCTGGGACGTGCTGCTGCTGCTGCTACTATGACCCATCATGTTCTTCATCTCGG 780
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 CGATGGAGTTTTGCATCTCGCCCAGGCCCTGCTTGACGGCGGCCGCGACGTTGTGCTGCT 840
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 GGAGGAGGAGGACGACGTTAGGGACGACATACGCTGCGTGGAGGAGGAACTCTTCTCCAC 900
consensus_7252#1 ------------------------------------------------------------
consensus_7252#0 ATGCTTCGTCGTGGTGCTGGAGGTGGACGACGACAACTTGGAGCTTTTGCTGCTGCTACT 960
consensus_7252#1 ----------------------------CCCGGGAAAAGGGGGCCTTTTTTTTTTTTTTT 32
** ** ** ** *** * * * *
consensus_7252#0 GCTCCTGCTGTTGAGTAACTGTAAATGGACGGACGCTCACGGGTTCACAGCAGGCAGCGG 1020
consensus_7252#1 TTTTTTTTTTTTTA---------------CGGACGCTCACGGGTTCACAGCAGGCAGCGG 77
* * * ** * *******************************
consensus_7252#0 GGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAA 1080
consensus_7252#1 GGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAA 137
************************************************************
consensus_7252#0 GCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCG 1140
consensus_7252#1 GCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCG 197
************************************************************
consensus_7252#0 CACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGC 1200
consensus_7252#1 CACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGC 257
************************************************************
consensus_7252#0 GAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTT-GATTAATAGTTT-GCGTCCG 1258
consensus_7252#1 GAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCG 317
*************************************** ************ **** **
consensus_7252#0 AAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTG 1318
consensus_7252#1 AAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTG 377
************************************************************
consensus_7252#0 GAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTTTTCGCTGCAAACAGCA 1378
consensus_7252#1 GAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTGTTCGCTGCAAACAGCA 437
******************************************* ****************
consensus_7252#0 CCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTAT 1438
consensus_7252#1 CCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTAT 497
************************************************************
consensus_7252#0 CGTTTTTTTTT-GTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCGTCTGCGACAAGTT 1497
consensus_7252#1 CGTTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTC-TCTGCGACAAGTT 556
*********** ********************************** *************
consensus_7252#0 CGTGCTGATCGTTCGTTCGTTCTGGGGGTACTCCAATAGGCCAACAGTTCTCGAG 1552
consensus_7252#1 CGTGCTGATCGTTCGTTCGTT---------------------------------- 577
*********************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||