These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1086 fasta sequence [CCGAAACGGTCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGGCACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCAACGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAATTGCTCGCTAAGAAGGCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAACCGTCTGTGAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATGATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAGAAAAGGTCGGAAGTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGAAGAAGGAACAGTGAAGGTGTTTGTGCAAGGATCCGTTTATTCCTCGTACAGAAAAAGAAAGCACGCAGAGGAACAGTGGGTGAAACAAATCACGGCACGCCAATGAAAGTGAATCGCGGCAACTTGTTCCCGACCGATCCGTTCTAGCTCTCCTTTAAGTGCGTGACGTCGGCTGGTTGTCCGTGTGTTTGTGTGTGTGACGTGGCTTGCCTAAATTCCGTTATTTCTACTCCCACCGAAAAATCACTCAGCCGGGACACACAGCTGACTGACCATCGCCGGTGAACTTCAGCTAAAAATAAACCAGTGCTTTCCCCCCTTCCCCGCCATCGACTTGGTTGGCAACAGAGCAGTGCGTGTGTGCGATCGCAGCTTCAGTGCCGGTTTCGGGCGAGTGTGTCGCCGCCTGTTGTTCAACGGTTTCCTAACTTGCGTGTTTCGATGCATCCATCGTTCCGGCTAGCCGCGTTCCTTCCACGGGACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTTTCCGCGCCTGTCCGTGTGTGCGTGTCTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTC] [+] EMBL BM648712 [CCGAAACGGTCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGGCACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCAACGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAATTGCTCGCTAAGAAGGCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAACCGTCTGTGAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATGATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAGAAAAGGTCGGAAGTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGAAGAAGGAACAGTGAAGGTGTTTGTGCAAGGATCCGTTTATTCCTCGTACAGAAAAAGAAAGCACGCAGAGGAACAGTGGGTGAAACAAATCACGGCACGCCAATGAAAGTGAATCGCGGCAACTTGTTCCCGACCGATCCGTTCTAGCTCTCCTTTAAGTGCGTGACGTCGGCTGGTTGTCCGTGTGTTTGTGTGTGTGACGTGGCTTGCCTAAATTCCGTTATTTCT ] [+] EMBL BM627986 [ ccgAACAAATCACGGCACGCCAATGAAAGTGAATCGCGGCAACTTGTTCCCGACCGATCCGTTCTAGCTCTCCTTTAAGTGCGTGACGTCGGCTGGTTGTCCGTGTGTTTGTGTGTGTGACGTGGCTTGCCTAAATTCCGTTATTTCTACTCCCACCGAAAAATCACTCAGCCGGGACACACAGCTGACTGACCATCGCCGGTGAACTTCAGCTAAAAATAAACCAGTGCTTTCCCCCCTTCCCCGCCATCGACTTGGTTGGCAACAGAGCAGTGCGTGTGTGCGATCGCAGCTTCAGTGCCGGTTTCGGGCGAGTGTGTCGCCGCCTGTTGTTCAACGGTTTCCTAACTTGCGTGTTTCGATGCATCCATCGTTCCGGCTAGCCGCGTTCCTTCCACGGGACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTTTCCGCGCCTGTCCGTGTGTGCGTGTCTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTC] consensusID : consensus_7253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [TCGGCTCTTGCCGATGCACGATCACTTTGGGAGGAAATTGAGCTGTGTTTCTGTTTCTTTTAACGTGTTATTTAATCCTTTTTGTTAAACTGTCTTCTTTTTTTTTACTGGAACTCTCTGTTTTGTGATCGCGAGTTTTATGTGATATGTTCTGCCCGAGGGCTCCCGCAATGCATCAAATGCATCCCTACACATTGTGATAATGGTATAAAGCCGCGTTCCTTCCACGGGACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTGTCCGCGCCTGTGCGCGTGTGTGAGTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTCTGTCTGCATTGCTGAACGATTTCTGGCGTGAAGAAGTGCCCACTCCAAGTGAGTTTACCCGTGTGTGCTGACTTCTCAACGCGCAAAAGGCAAGGAAGCAGCAAACCGGCCCTTCTAGTTAACCTGTGCCACGACCTTCAAACCCGTTACCGTCCTTCCGCAAGCGTTACTTGGCCGCTTTCCCGCTCGTCTGAATGCCAGCGTTTGCCGAAATGTT] [+] EMBL BM615840 [TCGGCTCTTGCCGATGCACGATCACTTTGGGAGGAAATTGAGCTGTGTTTCTGTTTCTTTTAACGTGTTATTTAATCCTTTTTGTTAAACTGTCTTCTTTTTTTTTACTGGAACTCTCTGTTTTGTGATCGCGAGTTTTATGTGATATGTTCTGCCCGAGGGCTCCCGCAATGCATCAAATGCATCCCTACACATTGTGATAATGGTATAAAGCCGCGTTCCTTCCACGGGACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTGTCCGCGCCTGTGCGCGTGTGTGAGTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTCTGTCTGCATTGCTGAACGATTTCTGGCGTGAAGAAGTGCCCACTCCAAGTGAGTTTACCCGTGTGTGCTGACTTCTCAACGCGCAAAAGGCAAGGAAGCAGCAAACCGGCCCTTCTAGTTAACCTGTGCCACGACCTTCAAACCCGTTACCGTCCTTCCGCAAGCGTTACTTGGCCGCTTTCCCGCTCGTCTGAATGCCAGCGTTTGCCGAAATGTT] consensusID : consensus_7253#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 463 fasta sequence [CCGCCCACGCGTCCGCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGG-CACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCTGCAACGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAATTGCTCGCTAAGAAGGCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAACCGTCTGTGAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATGATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAGAAAAGGTCGGAAGTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGG] [+] EMBL BM636915 [CCGCCCACGCGTCCGCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGG CACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCTGCAACGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAATTGCTCGCTAAGAAGGCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAACCGTCTGTGAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATGATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAGAAAAGGTCGGAAGTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGG] [+] EMBL BM651214 [ AATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGGTCACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCT ] [+] EMBL BM639563 [ ccgGCTCGCTCTTCCCGCAACCATCACACGG CACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAAAGTTTGTGGCCTCTATCCCTGCAACG ] consensusID : consensus_7253#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [CNGGNCATGCATGGCTCAGGCCAGAATCGGCACNGAAGGTTTCGGGGTGTNATCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTCTGTCTGCGATTGCTGAACGATTTCTGGCGTGAAGAAGTGCCCACTCCAAGTGAGTTTACCCGGTGTGTGCTGACGTTCTCAACGCGCAAAAGGCAAGGAAGCAGCAAACCGGCCCTTCTAGATTCAGCCTGTGCCACGGACCGTTACAAATCCGTTACCGTCCTTCCGCGANGCGTN] [+] EMBL BX469697 [CNGGNCATGCATGGCTCAGGCCAGAATCGGCACNGAAGGTTTCGGGGTGTNATCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTCTGTCTGCGATTGCTGAACGATTTCTGGCGTGAAGAAGTGCCCACTCCAAGTGAGTTTACCCGGTGTGTGCTGACGTTCTCAACGCGCAAAAGGCAAGGAAGCAGCAAACCGGCCCTTCTAGATTCAGCCTGTGCCACGGACCGTTACAAATCCGTTACCGTCCTTCCGCGANGCGTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7253#1 TCGGCTCTTGCCGATGCACGATCACTTTGGGAGGAAATTGAGCTGTGTTTCTGTTTCTTT 60 consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 ------------------------------------------------------------ consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 TAACGTGTTATTTAATCCTTTTTGTTAAACTGTCTTCTTTTTTTTTACTGGAACTCTCTG 120 consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 ------------------------------------------------------------ consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 TTTTGTGATCGCGAGTTTTATGTGATATGTTCTGCCCGAGGGCTCCCGCAATGCATCAAA 180 consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 -----CCGAAACGGTCG--AAGCAAATGGACGTAGCTCGCTCTTCCCGCAAC-CATCACA 52 consensus_7253#2 --CCGCCCACGCGTCCGCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAAC-CATCACA 57 consensus_7253#1 TGCATCCCTACACATTGTGATAATGGTATAAAGCCGCGTTCCTTCCACGGGACAAGGCCC 240 consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 CGGCACCAAACACGACACAACAGCAACCC----CGGAGAGCTGCTGCTGTTACTGCTACT 108 consensus_7253#2 CGGCACCAAACACGACACAACAGCAACCC----CGGAGAGCTGCTGCTGTTACTGCTACT 113 consensus_7253#1 GAAAGAGCAAGTGAGCCCGACAGTGTAAGTGTCCGCGCCTGTGCGCGTGTGTGAGTG-TT 299 consensus_7253#3 ----------------------------------------CNGGNCATGCATG---G-CT 16 consensus_7253#0 GCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCC---AA 165 consensus_7253#2 GCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCTGCAA 173 * * * consensus_7253#1 TGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTT-TCACGCCGCCTGCTAGATTGTTAG 358 consensus_7253#3 CAGGCCAGAATCGGCACNGAAGGTTTCGGGGTGTNATCACGCCGCCTGCTAGATTGTTAG 76 consensus_7253#0 CGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAAT-TGCTCGCTAAGAAG 224 consensus_7253#2 CGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAAT-TGCTCGCTAAGAAG 232 * * * **** * * * **** * * ** consensus_7253#1 GCGTTGTGT--TAGGCAAGTGTCTGTCTGC-ATTGCTGAACGATTTCTGGCGTGAAGAAG 415 consensus_7253#3 GCGTTGTGT--TAGGCAAGTGTCTGTCTGCGATTGCTGAACGATTTCTGGCGTGAAGAAG 134 consensus_7253#0 GCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAAC 284 consensus_7253#2 GCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAAC 292 **** ** ** * * * ** * * *** * * * ** ** ** consensus_7253#1 TGCCCACTCCAAGTGAGTTTACCCG-TGTGTGCTGAC-TTCTCAACGCGCAAAAGGCAAG 473 consensus_7253#3 TGCCCACTCCAAGTGAGTTTACCCGGTGTGTGCTGACGTTCTCAACGCGCAAAAGGCAAG 194 consensus_7253#0 CGTCTGT----GAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATG 340 consensus_7253#2 CGTCTGT----GAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATG 348 * * * * * * * * * ** * ** ** *** ** * * consensus_7253#1 GAA-----GCAGCAAACCGGCCCTTCTAG--TTAACCTGTGCCACGACC---TTCAAACC 523 consensus_7253#3 GAA-----GCAGCAAACCGGCCCTTCTAGATTCAGCCTGTGCCACGGACCGTTACAAATC 249 consensus_7253#0 ATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAG--AAAAGGT 398 consensus_7253#2 ATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAG--AAAAGGT 406 * * * *** * * * * * * ** consensus_7253#1 CGTTACCGTCCTTCCGC-AAGCGTTACTTGGCCGCTTTCCCGCTCGTCTGAATGCCAGCG 582 consensus_7253#3 CGTTACCGTCCTTCCGCGANGCGTN----------------------------------- 274 consensus_7253#0 CGGAA--GTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGAA 456 consensus_7253#2 CGGAA--GTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGG- 463 ** * *** * * ** consensus_7253#1 TTTGCCGAAATGTT---------------------------------------------- 596 consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 GAAGGAACAGTGAAGGTGTTTGTGCAAGGATCCGTTTATTCCTCGTACAGAAAAAGAAAG 516 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------------------------------------ consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 CACGCAGAGGAACAGTGGGTGAAACAAATCACGGCACGCCAATGAAAGTGAATCGCGGCA 576 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------------------------------------ consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 ACTTGTTCCCGACCGATCCGTTCTAGCTCTCCTTTAAGTGCGTGACGTCGGCTGGTTGTC 636 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------------------------------------ consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 CGTGTGTTTGTGTGTGTGACGTGGCTTGCCTAAATTCCGTTATTTCTACTCCCACCGAAA 696 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------------------------------------ consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 AATCACTCAGCCGGGACACACAGCTGACTGACCATCGCCGGTGAACTTCAGCTAAAAATA 756 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------------------------------------ consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 AACCAGTGCTTTCCCCCCTTCCCCGCCATCGACTTGGTTGGCAACAGAGCAGTGCGTGTG 816 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------------------------------------ consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 TGCGATCGCAGCTTCAGTGCCGGTTTCGGGCGAGTGTGTCGCCGCCTGTTGTTCAACGGT 876 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------------------------------------ consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 TTCCTAACTTGCGTGTTTCGATGCATCCATCGTTCCGGCTAGCCGCGTTCCTTCCACGGG 936 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------------------------------------ consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 ACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTTTCCGCGCCTGTCCGTGTGTG 996 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------------------------------------ consensus_7253#3 ------------------------------------------------------------ consensus_7253#0 CGTGTCTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTA 1056 consensus_7253#2 ------------------------------------------------------------ consensus_7253#1 ------------------------------ consensus_7253#3 ------------------------------ consensus_7253#0 GATTGTTAGGCGTTGTGTTAGGCAAGTGTC 1086 consensus_7253#2 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||