These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1424 fasta sequence [CCGCACAGGTGAAAACTCGCTGGTCGATCGTCCCTAGCACACAGACACACCTTCTATCCGGTTGCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGAAACGGAAGAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGTCCGCCTGCGTGTTACAAGTGCTGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAAGCTCGTCAAATTGACGTCACGCAGATAGGTAGCCAAAAAAAAGCGATTCATTGCCCTCAGAGCCAAAGGTTTTGTGCCCGGTTGGT---GACAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTACTAGTTGAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACG-GGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGGAAGGAGTCGGCGCACCAGCGCCGGGCAGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACTCGGGCCCGCTCGACGCCACAGCTGTTCCACACTTCGACGCCCCCGAGACGCTTTAACCCCGAAACCCGAACCATCGCGGCATCATGCAGAAGTTTATCGCTTCCCGGGGCCGACTGAGCAAGCTGGCGGCGAACGGTGGCGCCGGGGGCCACAACGGGCCGGCTTCAGCCGTGCCGCAAATGATGACAAGCATGGTCAGCACGAAAGCAGATCCGATCGTGCCCTCGGTCGATCTGAGCCGCTCACATCTGATGATCCTGCCGACGGCCATCTCCACACCGCCCACCATCGAGCG] [+] EMBL BM634772 [CCGCACAGGTGAAAACTCGCTGGTCGATCGTCCCTAGCACACAGACACACCTTCTATCCGGTTGCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGAAACGGAAGAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGTCCGCCTGCGTGTTACAAGTGCTGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAAGCTCGTCAAATTGACGTCACGCAGATAGGTAGCCAAAAAAAAGCGATTCATTGCCCTCAGAGCCAAAGGTTTTGTGCCCGGTTGGT GACAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTACTAGTTGAATTATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGTGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAA ] [+] EMBL BM591222 [ CCGAAGG TTGTGCCCGGTTGGTGCCGCCAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTTCTAGTTCAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACG GGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGGAAGGAGTCGGCGCACCAGCGCCGGGCAGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACTCGGGCCCGCTCGACGCCACAGCTGT ] [+] EMBL CNS08PWW [ CAATCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTACTAGTTGAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACGTGGTTGGACCTGAACGATGACAACCTG ] [+] EMBL BM604052 [ ccgGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACG GGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCACCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGTGAAGGAGACGGCGCACCAGCGCCGAGCGGAAGAGCAGCAGCGCCGCGCGTTCATCTTGCCTAGCCCGAAAACACTCACACGGGCCCGCTCGACGCCACAGCTGTTCCACACTTCGACGCCCCCGAGACGCTTTAACCCCGAAACCCGAA ] [+] EMBL BM591051 [ ccGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACG GGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGGAAGGAGTCGGCGCACCAGCGCCGGGCAGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACTCGGGCCCGCTCGACGCCACAGCTGTTCCACACTTCGACGCCCCCGAGACGCTTCAA CCCG AACCCGAACCATCGCGGCATCATGCAGAAGTTTATCGCTTCCCGGGGCCGACTGAGCAAGCTGGCGGCGAACGGTGGCGCCGGGGGCCACAACGGGCCGGCTTCAGCCGTGCCGCAAATGATGACAAGCATGGTCAGCACGAAAGCAGATCCGATCGTGCCCTCGGTCGATCTGAGCCGCTCACATCTGATGATCCTGCCGACGGCCATCTCCACACCGCCCACCATCGAGCG] consensusID : consensus_7256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [GACCCACGCGTCCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGAAACGGAAAAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGCCCGTCCGGGTGTTACAAGTGCTGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAAGCTCGTCAAATTGACGTCACGCAGATAGGCAGTCAAAAAAAAAAGCGATTCATTGCCGTAAGGTTGTGCCCGGTTGGTGCCGCCAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTTCTAGTTCAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCAC] [+] EMBL BM653536 [GACCCACGCGTCCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGAAACGGAAAAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGCCCGTCCGGGTGTTACAAGTGCTGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAAGCTCGTCAAATTGACGTCACGCAGATAGGCAGTCAAAAAAAAAAGCGATTCATTGCCGTAAGGTTGTGCCCGGTTGGTGCCGCCAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTTCTAGTTCAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCAC] consensusID : consensus_7256#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [GACCCACGCGTCCGCTCCATTTAGGTGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCAAGACCCAACCTTAACTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGGACCGAGGAGCGGAACGGGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGAAAGGAGACGGCGCACCAGCGCCGGGCGGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACACGGGCCCGCT] [+] EMBL BM630168 [GACCCACGCGTCCGCTCCATTTAGGTGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCAAGACCCAACCTTAACTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGGACCGAGGAGCGGAACGGGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGAAAGGAGACGGCGCACCAGCGCCGGGCGGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACACGGGCCCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7256#0 CCGCACAGGTGAAAACTCGCTGGTCGATCGTCCCTAGCACACAGACACACCTTCTATCCG 60 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 GTTGCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTA 120 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 GTTTAGAAACGGAAGAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAA 180 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 AAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACG 240 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 TTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGTCCGCCTGCGTGTTACAAGTGC 300 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 TGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGG 360 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 TGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAA 420 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 GCTCGTCAAATTGACGTCACGCAGATAGGTAGCCAAAAAAAAGCGATTCATTGCCCTCAG 480 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 AGCCAAAGGTTTTGTGCCCGGTTGGTGACAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAA 540 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 GGGAAGCATTTTGTACTAGTTGAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGC 600 consensus_7256#2 ---------------------------------------------GACCCACGCGTCCGC 15 consensus_7256#1 ---------------------------------------------GACCCACGCGTCCGA 15 * ** * consensus_7256#0 TC----------CATTTAGGG-----GGAAACGTTTGCACAGGT-GCAGTGTAGTCAGAC 644 consensus_7256#2 TC----------CATTTAGGT-----GGAAACGTTTGCACAGGT-GCAGTGTAGTCAGAC 59 consensus_7256#1 TCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGA 75 ** *** ** ** * * * ** * ******* consensus_7256#0 CGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGAT-----TAAATCAATAC 699 consensus_7256#2 CGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGAT-----TAAATCAATAC 114 consensus_7256#1 AACGGAAAAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAAAC 135 **** * *** * *** * *** ** ** *** ** ** consensus_7256#0 CCTCTATCGCTATCTGCCGT--TTCAAGTG-GTCGTGGTGGTTCGGGGTGTATTATCGAT 756 consensus_7256#2 CCTCTATCGCTATCTGCCGT--TTCAAGTG-GTCGTGGTGGTTCGGGGTGTATTATCGAT 171 consensus_7256#1 AACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCA 195 * * *** * ** ** ***** * * * *** ** * * consensus_7256#0 TGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAG------ACA 810 consensus_7256#2 TGATAACGCGTAAAGCCAAGACCCAACCTTAACTCCAGCAATCATCATGAG------ACA 225 consensus_7256#1 CATCCACGCGATCGGCGTTGTGTGTGGTTCGGCCCGTCCGGGTGTTACAAGTGCTGCGTG 255 ***** ** * * * * * * * ** consensus_7256#0 GATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGAC 870 consensus_7256#2 GATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGAC 285 consensus_7256#1 TGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTA 315 ** * ** *** * * ** * * **** **** * * consensus_7256#0 GCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACGGGCT 930 consensus_7256#2 GCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGGACCGAGGAGCGGAACGGGCT 345 consensus_7256#1 CCATTAGAGGTCAG-GCTCCTCCTGTTCGACTTTTC--GATCCGCTGGGATGAACAAGCT 372 * * * * *** * * ** * * *** * * **** *** consensus_7256#0 GGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTC 990 consensus_7256#2 GGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTC 405 consensus_7256#1 CGTC----AAATTGACGTCACGCAGATAGGCAGTCAAAAAAAA--AAGCGATTCATTGCC 426 * * * **** * * * **** * * ** ** ** * consensus_7256#0 GCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGG 1050 consensus_7256#2 GCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGG 465 consensus_7256#1 GTAAGGTTGTGCCCGGTTGGTGCCGCCAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGG 486 * * ** * * * * * * ** ** ** ** consensus_7256#0 GAAGGAGTCGGC----GCACCAGCGCCGGGCAGAAGAGCAGCAGCGCCGGGCATTCATCT 1106 consensus_7256#2 AAAGGAGACGGC----GCACCAGCGCCGGGCGGAAGAGCAGCAGCGCCGGGCATTCATCT 521 consensus_7256#1 GAAGCATTTTGTTCTAGTTCAATCATCCTAAAAAAAAGTTGTGTAGCCGAA-ACCAAGCT 545 *** * * * * * * * ** ** * **** * * ** consensus_7256#0 TGCCGAGCCCGAAAACACTCACTCGGGCCCGCTCGACGCCACAGCTGTTCCACACTTCGA 1166 consensus_7256#2 TGCCGAGCCCGAAAACACTCACACGGGCCCGCT--------------------------- 554 consensus_7256#1 CCATTTAGGGGGAAACGTTTGCAC------------------------------------ 569 * **** * * * consensus_7256#0 CGCCCCCGAGACGCTTTAACCCCGAAACCCGAACCATCGCGGCATCATGCAGAAGTTTAT 1226 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 CGCTTCCCGGGGCCGACTGAGCAAGCTGGCGGCGAACGGTGGCGCCGGGGGCCACAACGG 1286 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 GCCGGCTTCAGCCGTGCCGCAAATGATGACAAGCATGGTCAGCACGAAAGCAGATCCGAT 1346 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 CGTGCCCTCGGTCGATCTGAGCCGCTCACATCTGATGATCCTGCCGACGGCCATCTCCAC 1406 consensus_7256#2 ------------------------------------------------------------ consensus_7256#1 ------------------------------------------------------------ consensus_7256#0 ACCGCCCACCATCGAGCG 1424 consensus_7256#2 ------------------ consensus_7256#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||