These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1305 fasta sequence [CCGGTTTACACCCGAACAAATACAATCTGAATGAGTTTTGTTATTACAATCTTTCCACAACGCGCCAGCATGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCTCAACCACGTCGTAGCACCAAAAAGGAGAAACCCAACACATTCAAAGCTAAACGGAGACCTAAAAAGAAACCGACGAACCAGCTGGCACAAACCTTCGCAAGCATGGATACCCGGCAGGCAAACATGAGCCCTGGCAAGATGTCGAAAGCGATGAAACGAAGCTCGAAGGAAAATTTGCGCCGGTTGAGTGCTGTTGTGGAAAAACGTCGCAAGCAGCAGGATGC---AGTGCAGTCGCTCCAAAACATGCCAGTCGCTGTCAACCCACAGAACGGGGGTATCAAAGAGAATAATCAACGAAAATCGGCCCCCGATACGATCGTGATTGAGGATTCGGATGAAGAAAGTGAGCCGACGAGTGGTACGGGTGGTGATGCAGTGGAAAAGGCTTCCACTGATCCTTTGTTTTACGTCGATCGTAACCCTGGTATACGGGGAGGAAGATGTTCCACTGTACGTCGTCGGTACCGATGTGGAGGAACAATCAGCATCAACGAAGGATGGTGAACCAAAACAACAACCGTCGTCTGGCAATATCGAACCGGGACCACCGACGGTCTGCCACTATCGAACCGGGCGAATGTAGTGTGATTGTGCTAGACAGCACGTTCGATCAAACGATGAACAACAGCATGAAGGACATGAAGATCAACGCTGCTGAGTGTGTACAACCAGTAACGGTGGACACTGCCGAACCGTGCACGAGTTCGAGCGGTACCAGTACCAATACCAGTGCCACTAAAGGACAGACGAAGAAGAAGATCCGTTCCAACAGTCAAGCTGCCGAAACGATCGTTACCGATGTGATCGATTTGAGCGACTATCCCGATACGGAGCAGCAACCTTCTTGCTCGTTATATGCTGCCAGCAATACCAAAACGCCAGCCTTTCCCACGCTGGATCGTATCCCGCTCGGGTACAGCGCATCCAACGCTGCTCGAGCAAAACCCAATCGTCCTCAACAGAAGCCACACACAAATGGCAGTGGTAGTGGTAGTGGTGGTAGTGGTAAAAGTGGTGGTGGTAGTGGTAAAAGTGGGTGGGTGGCGGTGGAAAAGCCACGAATTCGAACGATGTGGTTATTGGGTCGGCTCTTCATGTAGAAAAGAAGATGAAGCGGATGGTAATCATTGATGGAAATAATGTCGCGTATGGCCATCTCAATGGGAAGATGTTCTCGGTCAAGGG] [+] EMBL BM626147 [CCGGTTTACACCCGAACAAATACAATCTGAATGAGTTTTGTTATTACAATCTTTCCACAACGCGCCAGCATGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCTCAACCACGTCGTAGCACCAAAAAGGAGAAACCCAACACATTCAAAGCTAAACGGAGACCTAAAAAGAAACCGACGAACCAGCTGGCACAAACCTTCGCAAGCATGGATACCCGGCAGGCAAACATGAGCCCTGGCAAGATGTCGAAAGCGATGAAACGAAGCTCGAAGGAAAATTTGCGCCGGTTGAGTGCTGTTGTGGAAAAACGTCGCAAGCAGCAGGATGC AGTGCAGTCGCTCCAAAACATGCCAGTCGCTGTCAACCCACAGAACGGGGGTATCAAAGAGAATAATCAACGAAAATCGGCCCCCGATACGATCGTGATTGAGGATTCGGATGAAGAAAGTGAGCCGACGAGTGGTACGGGTGGTGATGCAGTGGAAAAGGCTTCCACTGATCCTTTGTTTTACGTCGATCGTAACCCTGGTATACGGGGAGGAAGATGTTCCACTGTACGTCGTCGGTACCGATGTGGAGGAACAATCAGCATCAACGAAGGATGGTGAACCAAAACAACAACCGTCGTCTGGCAATATCGAACCGGGACCACCGACGGTCTGCCACTATCGA ] [+] EMBL CNS08RJZ [ GACCTAAAAAGAAACCGACGAACCAGCTGGCACAAACCTTCGCAAGCATGGATACCCGGCAGGCAAACATGAGCCCTGGCAAGATGTCGAAAGCGATGAAACGAAGCTCGAAGGAAAATTTGCGCCGGTTGAGTGCTGTTGTGGAAAAACGTCGCAAGCAGCAAGATGCAGTAGTGCAGTCGCTCCAAAACATGCCAGTCGCTGTCAATCCACAGAACGGGGGTATCAAAGAGAATAATCAACAAAAATCGGCCCCCGATACGATCGTGATTGAGGATTCGGATGAAGAAAGTGAGCCGACGGGTGGTACGGGTGGTGATGCAGTGGAAAAGGCTTCCACTGATCCTTT ] [+] EMBL BM594880 [ ccgAATCAGCATCAACGAAGGATGGTGAACCAAAACAACAACCGTCGTCTGGCAATATCGAACC GGACCACCGACGTTCTGCCACTATCGAACCGGGCGAATGTAGTGTGATTGTGCTAGACAGCACGTTCGATCAAACGATGAACAACAGCATGAAGGACATGAAGATCAACGCTGCTGAGTGTGTACAACCAGTAACGGTGGACACTGCCGAACCGTGCACGAGTTCGAGCGGTACCAGTACCAATACCAGTGCCACTAAAGGACAGACGAAGAAGAAGATCCGTTCCAACAGTCAAGCTGCCGAAACGATCGTTACCGATGTGATCGATTTGAGCGACTATCCCGATACGGAGCAGCAACCTTCTTGCTCGTTATATGCTGCCAGCAATACCAAAACGCCAGCCTTTCCCACGCTGGATCGTATCCCGCTCGGGTACAGCGCATCCAACGCTGCTCGAGCAAAACCCAATCGTCCTCAACAGAAGCCACACACAAATGGCAGTGGTAGTGGTAGTGGTGGTAGTGGTAAAAGTGGTGGTGGTAGTGGTAAAAGTGGGTGGGTGGCGGTGGAAAAGCCACGAATTCGAACGATGTGGTTATTGGGTCGGCTCTTCATGTAGAAAAGAAGATGAAGCGGATGGTAATCATTGATGGAAATAATGTCGCGTATGGCCATCTCAATGGGAAGATGTTCTCGGTCAAGGG] consensusID : consensus_7257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 519 fasta sequence [ACACTTTTTTTTCCCACTGTACAACAGAAAACAGTGCACAGTTTTATGGTTTATAAAAAAAAATACACTCGCGAGATATTCTAATGCGATGTGCGATACAGTATCTGATGCAGCGTAGGACCGTACCGTCCGTACGGATCGTCCGGCAGGAAGAAGCAGTCTTTTACCCACGAGTAACCGACGACACGCGTTTCGATAATGCGTCGCCATTCTGGAGAAATGTCAAGAAGATCACGAAAATTATCGTTCGATATGATCACACCATCAAACTGTTCAGCGATTGATAGTATTAATCGATCATCGTACGATGAAGAGCACTGGCCGGGAAGACTTTTGCACGGGGCCAGCGTTACATCGCCATTTCGATGCATCTGTTCTAGCAATGCCTGGTCCGTACTTTGATACCTTTTTAATTTAAACTGAGGCACTACGGCGGTCACCTCGAAGCCGAGCTTTTTAAAGTAATTTATACACAGCTCTAGCCCCTTGACCGAGAACATCTTCCCATTGAGATGGCCA] [+] EMBL CNS08RK0 [ACACTTTTTTTTCCCACTGTACAACAGAAAACAGTGCACAGTTTTATGGTTTATAAAAAAAAATACACTCGCGAGATATTCTAATGCGATGTGCGATACAGTATCTGATGCAGCGTAGGACCGTACCGTCCGTACGGATCGTCCGGCAGGAAGAAGCAGTCTTTTACCCACGAGTAACCGACGACACGCGTTTCGATAATGCGTCGCCATTCTGGAGAAATGTCAAGAAGATCACGAAAATTATCGTTCGATATGATCACACCATCAAACTGTTCAGCGATTGATAGTATTAATCGATCATCGTACGATGAAGAGCACTGGCCGGGAAGACTTTTGCACGGGGCCAGCGTTACATCGCCATTTCGATGCATCTGTTCTAGCAATGCCTGGTCCGTACT ] [-] EMBL BX626518 [ TCGCGAGATATTCTAATGCGATGTGCGATACAGTATCTGTTGCAGNGTAGGACCGTNCCGTCCGTACGGATCGTCCGGCAGGAAGAAGCAGTCTTTTACCCACGAGTAACCGACGACACGCGT ] [+] EMBL AGA282681 [ AGAAGCAGTCTTTTACCCACGAGTAACCGACGACACGCGTTTCGATAATGCGTCGCCATTCTGGAGAAATGTCAAGAAGATCACGAAAATTATCGTTCGATATGATCACACCATCAAACTGTTCGGCGATTGATAGTATTAATCGATCATCGTACGATGAAGAGCACTGGCCGGGAAGACTTTTGCACGGGGCCAGCGTTACATCGCCATTTCGATGCATCTGTTCTAGCAATGCCTGGTCCGTACTTTGATACCTTTTTAATTTAAACTGAGGCACTACGGCGGTCACCTCGAAGCCGAGCTTTTTAAAGTAATTTATACACAGCTCTAGCCCCTTGACCGAGAACATCTTCCCATTGAGATGGCCA] consensusID : consensus_7257#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [ATTTTTGCGAAAGCGCTAGCCCGCAGCCAGCACCACACATCGATTAGTATTGTGGGATAAATTCCTCCTTGCGAATTACAATTGTGCTACTGTGCCCGCAACATCAAATATACTACCCAAATAGCGATAGACTCTTTATTCGTTTACCCTAACTTTTAACGCAACGACGTCCCAAACCCCCACCGACAATCCAATGCGGTTGGAACAGCGTGGAACAGTTGTTTCGGCGAACACACGGCACGAACACGCAACGGCGAGAACGAGTAATAATACTTACGTAGTAGAGGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCTCAACC] [+] EMBL AGA281053 [ATTTTTGCGAAAGCGCTAGCCCGCAGCCAGCACCACACATCGATTAGTATTGTGGGATAAATTCCTCCTTGCGAATTACAATTGTGCTACTGTGCCCGCAACATCAAATATACTACCCAAATAGCGATAGACTCTTTATTCGTTTACCCTAACTTTTAACGCAACGACGTCCCAAACCCCCACCGACAATCCAATGCGGTTGGAACAGCGTGGAACAGTTGTTTCGGCGAACACACGGCACGAACACGCAACGGCGAGAACGAGTAATAATACTTACGTAGTAGAGGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCTCAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7257#0 CCGGTTTACACCCGAACAAATACAATCTGAATGAGTTTTGTTATTACAATCTTTCCACAA 60 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 CGCGCCAGCATGGCTCGCACTAGGGCGGGCAAGAAGCAGCAATCAAACGGGCCTCCTGCT 120 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 CAACCACGTCGTAGCACCAAAAAGGAGAAACCCAACACATTCAAAGCTAAACGGAGACCT 180 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 AAAAAGAAACCGACGAACCAGCTGGCACAAACCTTCGCAAGCATGGATACCCGGCAGGCA 240 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 AACATGAGCCCTGGCAAGATGTCGAAAGCGATGAAACGAAGCTCGAAGGAAAATTTGCGC 300 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 CGGTTGAGTGCTGTTGTGGAAAAACGTCGCAAGCAGCAGGATGCAGTGCAGTCGCTCCAA 360 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 AACATGCCAGTCGCTGTCAACCCACAGAACGGGGGTATCAAAGAGAATAATCAACGAAAA 420 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 TCGGCCCCCGATACGATCGTGATTGAGGATTCGGATGAAGAAAGTGAGCCGACGAGTGGT 480 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 ACGGGTGGTGATGCAGTGGAAAAGGCTTCCACTGATCCTTTGTTTTACGTCGATCGTAAC 540 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 CCTGGTATACGGGGAGGAAGATGTTCCACTGTACGTCGTCGGTACCGATGTGGAGGAACA 600 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 ATCAGCATCAACGAAGGATGGTGAACCAAAACAACAACCGTCGTCTGGCAATATCGAACC 660 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 GGGACCACCGACGGTCTGCCACTATCGAACCGGGCGAATGTAGTGTGATTGTGCTAGACA 720 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 ------------------------------------------------------------ consensus_7257#0 GCACGTTCGATCAAACGATGAACAACAGCATGAAGGACATGAAGATCAACGCTGCTGAGT 780 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 -ACACTTTTTTTTCCCACTGTACAACAGAAAACAGTGCACAGTTTTATGGTTTATAAAAA 59 consensus_7257#0 GTGTACAACCAGTAACGGTGGACACTGCCGAACCGTGCACGAGTTCGAGCGGTACCAGTA 840 consensus_7257#2 ------------------------------------------------------------ consensus_7257#1 A---AAATACACTCGCGAGATATTCTAATGCGATGTGCGATACAGTATCTGATGCAGCGT 116 consensus_7257#0 CCAATACCAGTGCCACTAAAGGACAGACGAAGAAGAAGATCCGTTCCAACAGTCAAGCTG 900 consensus_7257#2 --------ATTTTTGCGAAAGCGCTAGCCCGCAGCCAGCACCACACATCGATTAGTATTG 52 consensus_7257#1 AGGACCGTACCGTC-CGTACGGATCGTCCGGCAGGAAGAAGCAGTCTTTTACCCA----- 170 * * * * * * ** * * * consensus_7257#0 CCGAAACGATCGTTACCGATGTGATCGATTTGAGCGACTATCCCGATACGGAGCAGCAAC 960 consensus_7257#2 TGGGATAAATTCCTCCTTGCGAATTACAATTGTGCTACTGTGCC----CGCAACATCAAA 108 consensus_7257#1 -CGAGTAACCGACGACACGCGTTTCGATAATGCGTCGCCATTCTGG--AGAAATGTCAAG 227 * * * ** * * * * * * *** consensus_7257#0 CTTCTTGCTCGTTATATGCTGCCAGCAATACCAAAACGCCAGCCTTTCCCACGCTGGATC 1020 consensus_7257#2 TATACTACCCAAATAGCGATAGACTCTTTATTCGTTTACCCTAACTTTTAACGC--AACG 166 consensus_7257#1 AAGATCACGAAAATTATCGTTCGAT-ATGATCACACCATCAAACTGTTCAGCGATTGATA 286 * * * * * ** * consensus_7257#0 GTATC--CCGCTC-GGGTACAGCGCATCCAACGCTGCTCGAGCAAAACCCAATCGTCCTC 1077 consensus_7257#2 ACGTC--CCAAAC-CCCCACCGACAATCCAATGCGGTTGGAACAGCGTGGAACAGTTGTT 223 consensus_7257#1 GTATTAATCGATCATCGTACGATGAAGAGCACTGGCCGGGAAGACTTTTGCACGGGGCCA 346 * * * ** * * ** * * * consensus_7257#0 AACAGAAGCCACACACAAATGGCAGTGGTAGTGGTAGTGGTGGTAGTG-GTAAAAGTGGT 1136 consensus_7257#2 T-------CGGCGAACACACGGCACGAACAC--GCAACGGCGAGAACGAGTAATAATACT 274 consensus_7257#1 GCGTTACATCGCCATTTCGATGCATCTGTTCTAGCAATGCCTGGTCCGTACTTTGATACC 406 * *** * * * * * consensus_7257#0 GGTGGTAGTGGTAAAAGTGGGTGGGTGGCGGTGGA---AAAGCCACGAATTCGAACGATG 1193 consensus_7257#2 TACG-TAGTAGAGGGCTCGCACTAG-GGCGGGCAA---GAAGCAGCAA--TCAAACGGGC 327 consensus_7257#1 TTTTTAATTTAAACTGAGGCACTAC-GGCGGTCACCTCGAAGCCGAGCTTTTTAAAGTAA 465 * * * ***** **** * ** * consensus_7257#0 TGGTTATTGGGTCGGCTCTTCATGTAGAAAAGAAGATGAAGCGGATGGTAATCATTGATG 1253 consensus_7257#2 CTCCTGCTCAACC----------------------------------------------- 340 consensus_7257#1 TTTATACACAGCTCTAGCCCCTTGACCGAGAACATCTTCCCATTGAGATGGCCA------ 519 * consensus_7257#0 GAAATAATGTCGCGTATGGCCATCTCAATGGGAAGATGTTCTCGGTCAAGGG 1305 consensus_7257#2 ---------------------------------------------------- consensus_7257#1 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||