These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 688 fasta sequence [CCGATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG-TTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG-AGTGTATGA--GTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAGAGAGAGAGATCATTGTTGCACTACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCAGCGTGGAGAGATTCGGTCGTGATTGGTGTCGCACATAAGAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGTGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCT-GCCAC-GGTCGCCGCCGTCAGCGGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGG] [+] EMBL BM643687 [CCGATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCGTTTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTT ] [+] EMBL BM616867 [ ccgGTGAGTGTGTCGCAAAGTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG TTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG AGTGTATGA GTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAGAGAGAGAGATCATTGTTGCACTACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCAGCGTGGAGAGATTCGGTCGTGATTGGTGTCGCACATAAGAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGTGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCT GCCAC GGTCGCCGCCGTCAGCGGCAGCACGGCCAAGGCGAA ] [+] EMBL BM641223 [ ccgGTCGCAAAGTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG TTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG AGTGTATGA GTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAGAGAGAGAGATCATTGTTGCACTACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCAGCGTGGAGAGATTCGGTCGTGATTGGTGTCGCACATAAGAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGTGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTAGCCACGGGTCGCCGCCGTCAGCGGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGG] consensusID : consensus_7268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [CCGGTTCGCACAAGTAGTGGCGCATATGCGTTTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGGTGGCG--GTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCG--GAGAGAGAGAGATCATTGTTGCAC-TACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCATCGTGGAGAGATTCGGTCGTGATTGGTGCCGCACATAAGAACGAACAACAGGCGCACAAGCGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTGCCACGGTCGCCGCCGTCAGCAGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGGCGGCCCCGGCGGCGGCGCTCGCGATCGATCCGATCATCAACCACGTCGGGGACGGCATCTTCCTGCAGGCC] [+] EMBL BM642666 [CCGGTTCGCACAAGTAGTGGCGCATATGCGTTTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGGTGGCG GTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCG GAGAGAGAGAGATCATTGTTGCAC TACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCATCGTGGAGAGATTCGGTCGTGATTGGTGCCGCACATAAGAACGAACAACAGGCGCACAAGCGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTGCCACGGTCGCCGCCGTCAGCAGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGGCGGCCCCGGCGGCGGCGCTCGCGATCGATCCGATCATCAACCACGTCGGGGACGGCATCTTCCTGCAGGCC] [+] EMBL BM620042 [ ccgTGCG TTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGGTGGCGGTGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAGAGAGAGAGAGATCATTGTTGCACATACAGTACATTGTTGGCGAGAGTGGCTGGATATAGGGCTGGCAGGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGAGCACATCATCGTGGAGAGATTCGGTCGTGATTGGTGCCGCACATAAGAACGAACAACAGGCGCACAAGCGGGTTTGCGTGTGCACGCAGCAGCAGTAGCAGCACCGAGCGCCACGATGAGTACGGAAC ] consensusID : consensus_7268#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [AAGAATCCCCCGAGGTTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCTAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCGTTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAGAGTGTATGAGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGANGAGAGAGAGATCATNTGTTGCACTACAGTACATTGTTGGCGACGAGTGGCTGGATATAGGGCTGGCAGTGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGACGCACNTCAGCGTGGAGAGATTCGGTCGTGACTCTGGTGTCGCACATAACAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGNTGGGTTTGCGTGTGCACGCANGCAGCAGCTAGCAGCACCGAGCGCCACGATGAGTACGGAACATACGGCAGCGAGTGAGCTGCTGGCCAATGGTACGTGCCACGGGTCGCCGCGNCAGCGGCAGCACGGC] [+] EMBL AL693121 [AAGAATCCCCCGAGGTTTTGCACAATATTGAACGCTGCTCCGTGCGCTTCCGCTAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCGTTTTTTCGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAGAGTGTATGAGTAATTGTTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGTGGCGGTGTGTGTGGCAGTGAAAACTGTACGTGAAATTGTGAAAACTACTCCCCACGCACTTGCGCTGGTGGTACGCACGCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGANGAGAGAGAGATCATNTGTTGCACTACAGTACATTGTTGGCGACGAGTGGCTGGATATAGGGCTGGCAGTGCGCCGGCACAGCTTCACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGACGCACNTCAGCGTGGAGAGATTCGGTCGTGACTCTGGTGTCGCACATAACAACGAACAACAGGCGTACAAGCACACACATCTCAGTAAGGCGGNTGGGTTTGCGTGTGCACGCANGCAGCAGCTAGCAGCACCGAGCGCCACGATGAGTACGGAACATACGGCAGCGAGTGAGCTGCTGGCCAATGGTACGTGCCACGGGTCGCCGCGNCAGCGGCAGCACGGC] consensusID : consensus_7268#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [CCGATTCGTGTTTCCATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAATGCTGCTCCGTGCGCTTCCGCAGCCAAAAGATTTGAACAAATTGGCCGGACAACGCATTCACAAAAAGAACTCAAACATCAACCGACTGCAGTAACCCATAATCAAACGAAAGGAATCAGGACAATCGGCCACCGTCCGTCTGCCTAGTGATGGTTGTTTTGACGTATAAATAATTAAATCTCCTGCGATTGCTCTTTGCACGTGCTGCACTACTACTTCT] [+] EMBL BM598181 [CCGATTCGTGTTTCCATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAATGCTGCTCCGTGCGCTTCCGCAGCCAAAAGATTTGAACAAATTGGCCGGACAACGCATTCACAAAAAGAACTCAAACATCAACCGACTGCAGTAACCCATAATCAAACGAAAGGAATCAGGACAATCGGCCACCGTCCGTCTGCCTAGTGATGGTTGTTTTGACGTATAAATAATTAAATCTCCTGCGATTGCTCTTTGCACGTGCTGCACTACTACTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7268#1 ------------------------------------------------------------ consensus_7268#2 -----------------------AAGAATCCCCCGAGGTTTTGCACAATATTGAACGCTG 37 consensus_7268#0 ------------CCGATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAACGCTG 48 consensus_7268#3 CCGATTCGTGTTTCCATTTTATGTGAGTGTGTCGCAAAGTTTGCACAATATTGAATGCTG 60 consensus_7268#1 ------------------------------CCGGTTCGCACAAGTAGTGGCGCATATGCG 30 consensus_7268#2 CTCCGTGCGCTTCCGCTAGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG 97 consensus_7268#0 CTCCGTGCGCTTCCGC-AGCCAAAAGTGGAAGTGTTCGCACAAGTAGTGGTGCATATGCG 107 consensus_7268#3 CTCCGTGCGCTTCCGC-AGCCAAAAG-------ATTTGAACAAATTG-GCCGGACA-ACG 110 ** * **** * * * * * * ** consensus_7268#1 TTTTTTTCGAATGAACCAGAAAAGCCTTCATGTGAGTGCAGCAGTGTATGAGTGTAATTG 90 consensus_7268#2 TTTTTT-CGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG-AGTGTATGAGT--AATTG 153 consensus_7268#0 TTTTTT-CGAATGAACCAGAAAAGTGTTCGTGTGAGTGCAG-AGTGTATGAGT--AATTG 163 consensus_7268#3 CATTCACAAAAAGAACTCAAACA----TCAACCGACTGCAGTAACCCATAA--------- 157 ** ** **** ** * ** ** ***** * ** * consensus_7268#1 TTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAGGTGGCGGTGTGTGTGGC-AGTG 149 consensus_7268#2 TTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAG-TGGCGGTGTGTGTGGC-AGTG 211 consensus_7268#0 TTAATTGGTGCTAGGTGTGAGATCAGTTGTGACGAAAG-TGGCGGTGTGTGTGGC-AGTG 221 consensus_7268#3 TCAA------------ACGAAAGGAATCAGGACAATCGGCCACCGTCCGTCTGCCTAGTG 205 * ** ** * * * *** * * * ** ** ** * **** consensus_7268#1 AAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCAC 209 consensus_7268#2 AAAACTGTACGTGAAATTGTGAAAACTAC-TCCCCACGCACTTGCGCTGGTGGTACGCAC 270 consensus_7268#0 AAAACTGTACGTGAAATTGTGAAAACTACCTCCCCACGCACTTGCGCTGGTGGTACGCAC 281 consensus_7268#3 ATGGTTGT-TTTGACGTATAAATAATTAAATCTCC-TGCGATTGCTCT--TTGCACGTGC 261 * *** *** * * ** ** ** ** ** **** ** * * *** * consensus_7268#1 GCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAG-AGAGAGAGATCATT-GTTGCACT 267 consensus_7268#2 GCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGANGAGAGAGAGATCATNTGTTGCACT 330 consensus_7268#0 GCGGGTAGTTGAACGAGCAAAAATTGGCTACCGGAG-AGAGAGAGATCATT-GTTGCACT 339 consensus_7268#3 TGCACTACTACTTCT--------------------------------------------- 276 ** * * consensus_7268#1 ACAGTACATTGTTGGCGA-GAGTGGCTGGATATAGGGCTGGCAG-GCGCCGGCACAGCTT 325 consensus_7268#2 ACAGTACATTGTTGGCGACGAGTGGCTGGATATAGGGCTGGCAGTGCGCCGGCACAGCTT 390 consensus_7268#0 ACAGTACATTGTTGGCGA-GAGTGGCTGGATATAGGGCTGGCAG-GCGCCGGCACAGCTT 397 consensus_7268#3 ------------------------------------------------------------ consensus_7268#1 CACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGA-GCACATCATCGTGGAGAGAT 384 consensus_7268#2 CACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGACGCACNTCAGCGTGGAGAGAT 450 consensus_7268#0 CACCCGCCAGCGCAACGTCAACGAACCGTGAAGCACCGA-GCACATCAGCGTGGAGAGAT 456 consensus_7268#3 ------------------------------------------------------------ consensus_7268#1 TCGGTCGTGATT--GGTGCCGCACATAAGAACGAACAACAGGCGCACAAGC--------- 433 consensus_7268#2 TCGGTCGTGACTCTGGTGTCGCACATAACAACGAACAACAGGCGTACAAGCACACACATC 510 consensus_7268#0 TCGGTCGTGATT--GGTGTCGCACATAAGAACGAACAACAGGCGTACAAGCACACACATC 514 consensus_7268#3 ------------------------------------------------------------ consensus_7268#1 --------------GGGTTTGCGTGTGCACGCAG-CAGCAG-TAGCAGCACCGAGCGCCA 477 consensus_7268#2 TCAGTAAGGCGGNTGGGTTTGCGTGTGCACGCANGCAGCAGCTAGCAGCACCGAGCGCCA 570 consensus_7268#0 TCAGTAAGGCGGT-GGGTTTGCGTGTGCACGCAG-CAGCAG-TAGCAGCACCGAGCGCCA 571 consensus_7268#3 ------------------------------------------------------------ consensus_7268#1 CGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTGCCACGG 537 consensus_7268#2 CGATGAGTACGGAACATACGGCAGCGAGTGAGCTGCTGGCCAATGGTAC--GTGCCACGG 628 consensus_7268#0 CGATGAGTACGGAACATCCGGCAGCGAGTGAGCTGCTGGCCAATGCTACCGCTGCCACGG 631 consensus_7268#3 ------------------------------------------------------------ consensus_7268#1 -TCGCCGCCGTCAGCAGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGGCG 596 consensus_7268#2 GTCGCCGC-GNCAGCGGCAGCACGGC---------------------------------- 653 consensus_7268#0 -TCGCCGCCGTCAGCGGCAGCACGGCCAAGGCGAACATTGCCGTGCGCGTCACGGAGG-- 688 consensus_7268#3 ------------------------------------------------------------ consensus_7268#1 GCCCCGGCGGCGGCGCTCGCGATCGATCCGATCATCAACCACGTCGGGGACGGCATCTTC 656 consensus_7268#2 ------------------------------------------------------------ consensus_7268#0 ------------------------------------------------------------ consensus_7268#3 ------------------------------------------------------------ consensus_7268#1 CTGCAGGCC 665 consensus_7268#2 --------- consensus_7268#0 --------- consensus_7268#3 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||