These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1676 fasta sequence [TTGTTTTACCCCATTCTAAGTCTCTTATTTATATAATGTTTGCTCACACTTTGCTCTCTTCTATTGTTCTGTTCCAGTCTGAGTGCGTTTTTTCCACTTTTTTCATGTGTGTGCTCTCTGTAAATTATGTAAACTTCTTTTCGCATGATTCAATTTTATTTACAAAATACTGTTTCCATTTTCCATCATCAATAACACACACACACAGTACGTAAAATAGAATGAGCTTAGATTTATTTTGTGTTATTTGAAATCGTGACAAAGAATTTAAATTCAATCTATTAAACCTGCAACGAACAAAAGCCAACGGCAGTTTTAGAGAGAAAACTTGCCTGCATTGAGCACATTTCCTTAAACAGTAATGTACAATAGTTTCAAGAAATGCGTTTGAGTTTAACAATAAAATATGATGGAGATGGACAGATGGATATCGCAACTGATTGTTTTTTTATCGACCGCNATTGCCATACACGTGGAACTCGATCAATGGCGTAAAACAGAAATTTGACCACTCCTCATATATACAGTGCAGTATTAAGAAATGNTTTATCTTTGTCGTTTGATGAGTTTTTGTGNAATAAATTTTCTGGTTTTTTTTGTGTATTAGAACAAAGAATAGGACCACATACGCTTGTCGATGATCGTTTGTTACACTATTTTTAAATCCCCTGTCGTGTGCTTAACGTAAGAGTTCAGTATTTTATACACATTACACATCTAGTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATTATTATTCTTGTAATTTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGCAATGTGTCTCTCTGATGTAGAGCCGTAGAGTATTTGTCATAGTTTATGTTAGCATTTCATTTGTATTAGGTTTTAGCGAAACCAGACGTCTACTTACTGCATTTAAACCCAGGACGGCTCGATGCCCAAATCGCAAGCCCTTCCTTTTTAAGCTAATAGTATTTAGTTATATTACCGATGTTTGTTGGTTATGTTG-ATCT-TTGTGTTGT-TAAATTATAATGCTTAAGTTTTTGAGTTTGATGAGTTTGCTTATTTAGTGTGAACAGATCTAGAAACAATTCTCGATAAACGATTAAATATCCCAGGCTCGATTGTCAGCAACGTATAATGTCTTGCAAGACAGCAATAGATCACGCTTGCCAGATAAATAGTAAAAAAAAACAGAAGAAAAAAACAAACAAACTACATGTTGAACAAGCAATGGTGTAACTACGTAATCAAAAGTCAACCAGTACAGCAGGCCCACATAACCGTTCGTGGCGCGAAGCATCGTTATTGCATACGGCAAACATTCACTCCATGCACTCACATNTGACGTGCAATCGACTGATAATGCTATTAAAACTGAAATGATATAAAGAACATCAATTCTAGTTGCAAAGCGGTTGCACAGAAACAGAGATAAAGAAAGCGCTAATGCGTTTCTCTCGAACTTATTTAGTTTTCTCGTNCATTACTCGTATCTCGCAANGACTTTCTTCGTTCATATCGACCGAAAAGCGAAAAGCTATTGTTAGGAGTTTATACGGATTATTATTATTTTTTTAAGTATATCTTTTTTTGATGATTTATTAAGATAATTTAAAAGGTAAATAAAAGTGTTGTTTAGTCAAATT] [+] EMBL BX627230 [TTGTTTTACCCCATTCTAAGTCTCTTATTTATATAATGTTTGCTCACACTTTGCTCTCTTCTATTGTTCTGTTCCAGTCTGAGTGCGTTTTTTCCACTTTTTTCATGTGTGTGCTCTCTGTAAATTATGTAAACTTCTTTTCGCATGATTCAATTTTATTTACAAAATACTGTTTCCATTTTCCATCATCAATAACACACACACACAGTACGTAAAATAGAATGAGCTTAGATTTATTTTGTGTTATTTGAAATCGTGACAAAGAATTTAAATTCAATCTATTAAACCTGCAACGAACAAAAGCCAACGGCAGTTTTAGAGAGAAAACTTGCCTGCATTGAGCACATTTCCTTAAACAGTAATGTACAATAGTTTCAAGAAATGCGTTTGAGTTTAACAATAAAATATGATGGAGATGGACAGATGGATATCGCAACTGATTGTTTTTTTATCGACCGCNATTGCCATACACGTGGAACTCGATCAATGGCGTAAAACAGAAATTTGACCACTCCTCATATATACAGTGCAGTATTAAGAAATGNTTTATCTTTGTCGTTTGATGAGTTTTTGTGNAATAAATTTTCTGGT ] [+] EMBL BX620400 [ TGTTATTTGAAATCGTGACAAAGAATTTAAATTCAATCTATTAAACCTGCAACGAACAAAAGCCAACGGCAGTTTTAGAGAGAAAACTTGCCTGCATTGAGCACATTTNCTTAAACAGTAATGTACAATANTTTCNAGAAAT ] [+] EMBL AL695242 [ cccgaggtnTTTTTTTATCGACCGCGATTGCCATACACATGGAACTCGATCAATGGCGTAAAACAGAAATTTGACCACTCCTCATATATACAGTGCAGTATTAAGAAATGTTTTATC TTGTCGTTTGATGAGTTTTTGTGTAATAAATTTTCTGTGTTTTTTTGTGTATTAGAACAAAGAATAGGACCACATACGCTTGTCGATGATCGTTTGTTACACTATTTTTAAATCCCCTGTCGTGTGCTTAACGTAAGAGTTCAGTATTTTATACACATTACACATCTAGTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATTATTATTCTTGTAATTTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGCAATGTGTCTCTCTGATGTAGAGCCGTAGAGTATTTGTCATAGTTTATGTTAGCATTTCATTTGTATTAGGTTTTAGCGAAACCAGACGTCTACTTACTGCATTTAAACCCAGGACGGCTCGATGC ] [+] EMBL AGA280079 [ tttttTTTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGTAATGTGTCTCTCTGATGTAGAGCCGTAGAGTATTTGTCATAGTTTATGTTAGCATTTCATTTGTATTAGGTTTTAGCGAAACCAGACGTCTACTTACTGCATTTAAACCCAGGACGGCTCGATGCCCAAATCGCAAGCCCTTCCTTTTTAAGCTAATAGTATTTAGTTATATTACCGATGTTTGTTGGTTATGTTG ATCT TTGTGTTGT TAAATTATAATGCTTAAGTTTTTGAGTTTGATGAGTTTGCTTATTTAGTGTGAACAGATCTAGAAACAATTCTCGATAAACGATTAAATATCCCAGGCTCGATTGTCAGCAACGTAT ] [+] EMBL BX624353 [ aaggaTTATGTAGCATCTGNANTGTAGTATAAATTATAATGCTTAAGTTTTTGAGTTTGATGAGTTTGCTTATTTAGTGTGAACAGATCTAGAAACAATTCTCGATAAACGATTAAATATCCCAGGCTCGATTGTCAGCAACGTATAATGTCTTGCAAGACAGCAATAGATCACGCTTGCCAGATAAATAGTAAAAAAAAACAGAAGAAAAAAACAAACAAACTACATGTTGAACAAGCAATGGTGTAACTACGTAATCAAAAGTCAACCAGTACAGCAGGCCCACATAACCGTTCGTGGCGCGAAGCATCGTTATTGCATACGGCAAACATTCACTCCATGCACTCACATNTGACGTGCAATCGACTGATAATGCTATTAAAACTGAAATGATATAAAGAACATCAATTCTAGTTGCAAAGCGGTTGCACAGAAACAGAGATAAAGAAAGCGCTAATGCGTTTCTCTCGAACTTATTTAGTTTTCTCGTNCATTACTCGTATCTCGCAANGACTTTCTTCGTTCATATCGACCGAAAAGCGA ] [-] EMBL AGA281776 [ GTATAATGTCTTGCAAGACAGCAATAGATCACGCTTGCCAGATAAATAGTAAAAAAAACCGGAAGAAAAAAACAAACAAACTACATGTTGAACAAGCAATGGTGTAACTACGTAATCAAAAGTCAACCAGTACAGCAGGCCCACATAACCGTTCGTGGCGCGAAGCATCGTTATTGCATACGGCAAACATTCACTCCATGCACTCACATTTGACGTGCAATCGACTGATAATGCTATTAAAACTGAAATGATATAAAGAACATCAATTCTAGTTGCAAGGCGGTTGCACAGAAACAGAGATAAAGAAAGCGCTAATGCGTTTCTCTCGAACTTATTTAGTTTTCTCGTTCATTACTCGTATCTCGCAATGACTTTCTTCGTTCATATCGACCGAAAAGCGAAAAGCTATTGTTAGGAGTTTATACGGATTATTATTATTTTTTTAAGTATATCTTTTTTTGATGATTTATTAAGATAATTTAAAAGGTAAATAAAAGTGTTGTTTAGTCAAATT] consensusID : consensus_7272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [CAGATCGGCACGAGGTGTAAATCCCCTGTCGTGTGCTTACGTAAGAGTCAGTATTTTATACACATTACACATCTAGTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATTATTATTCTTGTAATTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGCAATGTGTCTCTCTGATGTAAGAGCCGTAGAGTATTTGTTCATAGTGTATGTTTGAGGCCATTTTCCAATTTGTAATTAGCGTTTTTAAGCGAAAAACCAGGAACCGTTCTAACTTTTAACCTGGGCNATTTTTAAAAACCCCCACAGGGACGGGGCTCCGAATTGGCCCCCAAAATTACGGGCGAAAGGCCCCTTGTTCCCGT] [+] EMBL BX468716 [CAGATCGGCACGAGGTGTAAATCCCCTGTCGTGTGCTTACGTAAGAGTCAGTATTTTATACACATTACACATCTAGTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATTATTATTCTTGTAATTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGCAATGTGTCTCTCTGATGTAAGAGCCGTAGAGTATTTGTTCATAGTGTATGTTTGAGGCCATTTTCCAATTTGTAATTAGCGTTTTTAAGCGAAAAACCAGGAACCGTTCTAACTTTTAACCTGGGCNATTTTTAAAAACCCCCACAGGGACGGGGCTCCGAATTGGCCCCCAAAATTACGGGCGAAAGGCCCCTTGTTCCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7272#0 TTGTTTTACCCCATTCTAAGTCTCTTATTTATATAATGTTTGCTCACACTTTGCTCTCTT 60 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 CTATTGTTCTGTTCCAGTCTGAGTGCGTTTTTTCCACTTTTTTCATGTGTGTGCTCTCTG 120 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 TAAATTATGTAAACTTCTTTTCGCATGATTCAATTTTATTTACAAAATACTGTTTCCATT 180 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 TTCCATCATCAATAACACACACACACAGTACGTAAAATAGAATGAGCTTAGATTTATTTT 240 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 GTGTTATTTGAAATCGTGACAAAGAATTTAAATTCAATCTATTAAACCTGCAACGAACAA 300 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 AAGCCAACGGCAGTTTTAGAGAGAAAACTTGCCTGCATTGAGCACATTTCCTTAAACAGT 360 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 AATGTACAATAGTTTCAAGAAATGCGTTTGAGTTTAACAATAAAATATGATGGAGATGGA 420 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 CAGATGGATATCGCAACTGATTGTTTTTTTATCGACCGCNATTGCCATACACGTGGAACT 480 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 CGATCAATGGCGTAAAACAGAAATTTGACCACTCCTCATATATACAGTGCAGTATTAAGA 540 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 AATGNTTTATCTTTGTCGTTTGATGAGTTTTTGTGNAATAAATTTTCTGGTTTTTTTTGT 600 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 GTATTAGAACAAAGAATAGGACCACATACGCTTGTCGATGATCGTTTGTTACACTATTTT 660 consensus_7272#1 -----------------------------------------CAGATCG--GCACGAGGTG 17 * * * *** * * consensus_7272#0 TAAATCCCCTGTCGTGTGCTTAACGTAAGAGTTCAGTATTTTATACACATTACACATCTA 720 consensus_7272#1 TAAATCCCCTGTCGTGTGCTTA-CGTAAGAGT-CAGTATTTTATACACATTACACATCTA 75 ********************** ********* *************************** consensus_7272#0 GTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATT 780 consensus_7272#1 GTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATT 135 ************************************************************ consensus_7272#0 ATTATTCTTGTAATTTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGC 840 consensus_7272#1 ATTATTCTTGTAATT-ACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGC 194 *************** ******************************************** consensus_7272#0 AATGTGTCTCTCTGATGTA-GAGCCGTAGAGTATTTGT-CATAGTTTATGTTAGCATTTC 898 consensus_7272#1 AATGTGTCTCTCTGATGTAAGAGCCGTAGAGTATTTGTTCATAGTGTATGTTTG-AGGCC 253 ******************* ****************** ****** ****** * * * consensus_7272#0 ATTTGTATTAGGTTTTAGCGAAACCAGACGTCTACTTACTGCATTTAAACCCAGGACGGC 958 consensus_7272#1 ATTT---TCCAATTT----GTAATTAG-CGTTT-TTAAGCGAA---AAACCAGGAACCGT 301 **** * *** * ** ** *** * * * * * ***** * ** * consensus_7272#0 TCGATGCCCAAATCGCAAGCCCTTCCTTTTTAAGCTAATAGTATTTAGTTATATTACCGA 1018 consensus_7272#1 TCTAACTTTTAACC-TGGGCNATTTTTAAAAACCCCCACAGGGACGGGGCTCCGAATTGG 360 ** * ** * ** ** * * * * ** * * * consensus_7272#0 TGTTTGTTGGTTATGTTGATCTTTGTGTTGTTAAATTATAATGCTTAAGTTTTTGAGTTT 1078 consensus_7272#1 CCCCCAAAATTACGGGCGAAAGGCCCCTTGTTCCCGT----------------------- 397 * * ** ***** * consensus_7272#0 GATGAGTTTGCTTATTTAGTGTGAACAGATCTAGAAACAATTCTCGATAAACGATTAAAT 1138 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 ATCCCAGGCTCGATTGTCAGCAACGTATAATGTCTTGCAAGACAGCAATAGATCACGCTT 1198 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 GCCAGATAAATAGTAAAAAAAAACAGAAGAAAAAAACAAACAAACTACATGTTGAACAAG 1258 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 CAATGGTGTAACTACGTAATCAAAAGTCAACCAGTACAGCAGGCCCACATAACCGTTCGT 1318 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 GGCGCGAAGCATCGTTATTGCATACGGCAAACATTCACTCCATGCACTCACATNTGACGT 1378 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 GCAATCGACTGATAATGCTATTAAAACTGAAATGATATAAAGAACATCAATTCTAGTTGC 1438 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 AAAGCGGTTGCACAGAAACAGAGATAAAGAAAGCGCTAATGCGTTTCTCTCGAACTTATT 1498 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 TAGTTTTCTCGTNCATTACTCGTATCTCGCAANGACTTTCTTCGTTCATATCGACCGAAA 1558 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 AGCGAAAAGCTATTGTTAGGAGTTTATACGGATTATTATTATTTTTTTAAGTATATCTTT 1618 consensus_7272#1 ------------------------------------------------------------ consensus_7272#0 TTTTGATGATTTATTAAGATAATTTAAAAGGTAAATAAAAGTGTTGTTTAGTCAAATT 1676 consensus_7272#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||