These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1278 fasta sequence [CCGATCGGCGCCCAAAAATTTTCACGTTTGTATCTGTAGCGGTTCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCCCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAGCATGCTCAACTACTACTCTACGCTGAACACGTTTGAAAAGGCTGCCGCATTCGAGACGCGCTTCGTCAATCGCTTCAAGTTCCGTTTGCGTAATATGCACGGCTTTCAAGTTATGCGACGTGTTAACCAGACGCTGATCCGCATCAAAAACCTGGACCTGGTGCAGGTTATTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATCCCGCAGACGGTGAACTTGCCGGTACGATCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTCCCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGCTTGGCGAAGAGTATGAGCGTGATATTTTGCAATGCGGCGACGCAAACGGTGCAACATCTAGCAATTGTGCTGGGATCGGAAGGGGATGCAGACCTTTTCACCCTGCTTCAGCACAGCACGACGGATGGGGAAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCAACAAGAGTGTGGAGGAAGCGCTCACGGC-GCCATCGTTCAGTTCCGTACCGAAAGCGATGCTACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCACCTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGCAGTTCCTGAAGCAGGAGCGAACC-AATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAGGGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAA-CCGACTTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGAGGGCACGTGAGTGAATCGTGCATCGC-TTCAATAAAGCAGAAACT] [+] EMBL BM621641 [CCGATCGGCGCCCAAAAATTTTCACGTTTGTATCTGTAGCGGTTCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCCCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAGCATGCTCAACTACTACTCTACGCTGAACACGTTTGAAAAGGCTGCCGCATTCGAGACGCGCTTCGTCAATCGCTTCAAGTTCCGTTTGCGTAATATGCACGGCTTTCAAGTTATGCGACGTGTTAACCAGACGCTCATCCGCATCAAAAACCTGGACCTGGTGCAGGTTATTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATCCCGCAGACGGTGAACTTGCCGGTACGATCCAACCTCGAGTATCTGCTGGTCAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTCCCGCTCGGTATGCAGACGAA ] [+] EMBL BX617604 [ TCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCTCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAACATGCTCAACTACTACTCTACGCTGAACTCGTTTGAAAAGGCTGCCGCATTCGAGACGCGCTTTGTCAATCGCTTCAAGTTCCGTTTGCGTAATATGCACGGCTTTCAAGTTATGCGACGTGTTAACCAGACGCTGATCCGCATCAAAAACCTGGACCTGGTTCAGGTTATTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATTCCGCAGACCGTGAACTTGCCAGTACGATCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTTTCCCGCTCGGTATGCAGAAGGACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGCTTGGCGAAGAGTACGAGC ] [+] EMBL CNS08SKG [ GTTAA CAGACGCTGATCCGCATCAAAAACCTGGACCTGGTGCAGGTTATTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATCCCGCAGACGGTGAACTTGCCGGTACGCTCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGCCAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTCCCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGCTTGGCGAAGAGTATGAGCGTGATATTTTGCAATGCGGCGACGCAAACGGTGCAACATCTAGCAATTGTGCTGGGATCGGAAGGGGATGCAGACCTTTTCACCCTGCTTCAGCACAGCACGACGGATGGGGAAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCAACAAGAGTGTGGAGGAAGCGCTCACGGC GCCATCGTTCAGTTCCGTACCGAAAGCGATGCTACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCACCTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGCAGTTCCTGAAGCAGGAGCGAACC AATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAGGGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAA CCGACTTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGAGGG ] [+] EMBL CNS08YVZ [ TTATGGATTTGCACAGCTTCCTGCCCGAGTCGGAATACATCCCGCAGACGGTGAACTTGCCGGTACGCTCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGATGCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTCCCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGC ] [-] EMBL CNS08SKH [ GCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACATGCATCTGTACCCCACGTACGTGATGTTTCTCGGCTTAATGGGCGAGCTGTGGCTGTTCTCCCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGATTCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGCGGCATGGCTTGGCGAAGAGTATGAGCGTGATATTTTGCAATGCGGCCACGCAAACGGTGCCACATCTAGCAATTG GCTGGGATCGGAAGGGGATGCAGACCTTTTCACCCTGCTTCAGCACAGCACGACGGATGGGGGAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCCACAAGAGTGTGGAGGAAG GCTCACGGCAGCCAACGTTCAGTTCCGTACCGAAAGCGATGCTACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCACCTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGCAGTTCCTGAAGCAGGAGCGAACCGAATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAGGGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAACCCGACTTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGGGGGCACGTGAGTGAATCGTGCATCGCTTTCAATAAAGCAGAA ] [-] EMBL CNS08YW0 [ GATGGGGAAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCAACAAGAGTGTGGAGGAAGCGCTCACGGC GCCATCGTTCAGTTCCGTACCGAAAGCGATGCTACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCACCTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGCAGTTCCTGAAGCAGGAGCGAACC AATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAGGGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAA CCGACTTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGAGGGCACGTGAGTGAATCGTGCATCGC TTCAATAAAGCAGAAACT] consensusID : consensus_7274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [CGNGGGTTACGGCGCTCCAATTATTTTCACGTTTGTATCTTGTATCGGTTCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCTCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAACATGCTCAACTACTACTCTACGCTGAACTCGTTTTGAAAAGGCTGCGCATTCGAGACGCGCTTTTGTCATCGCTTCAAGTTCCCGTGCGTAATATGCACGGCTTTTCAAGTTATCGCGACGTAGTTAACCAGACGCTTGATCCGACATCAAGAAAGCTTGGANCTGGTTTCAGGTTCATTATGGACTTATGCAACACGGCTTTCCTTGCCCCGAGTCGGGAAATTACAATTTGCCCGACATGTGAGCCCGGTTGAAACTTNGGCGCAGTTAACGGACTCCAACCGTTGGGAAGATAATCTTGGCGTTAGGGTTGANAGAAATTGCACAGGGATTAG] [+] EMBL AL697421 [CGNGGGTTACGGCGCTCCAATTATTTTCACGTTTGTATCTTGTATCGGTTCTCCCAAGAAAATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCTCCGTGTAAATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAACATGCTCAACTACTACTCTACGCTGAACTCGTTTTGAAAAGGCTGCGCATTCGAGACGCGCTTTTGTCATCGCTTCAAGTTCCCGTGCGTAATATGCACGGCTTTTCAAGTTATCGCGACGTAGTTAACCAGACGCTTGATCCGACATCAAGAAAGCTTGGANCTGGTTTCAGGTTCATTATGGACTTATGCAACACGGCTTTCCTTGCCCCGAGTCGGGAAATTACAATTTGCCCGACATGTGAGCCCGGTTGAAACTTNGGCGCAGTTAACGGACTCCAACCGTTGGGAAGATAATCTTGGCGTTAGGGTTGANAGAAATTGCACAGGGATTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7274#0 --CCGAT--CGGCGC-CCAAAAATTTTCACGTTTGTATCT-GTAGCGGTTCTCCCAAGAA 54 consensus_7274#1 CGNGGGTTACGGCGCTCCAATTATTTTCACGTTTGTATCTTGTATCGGTTCTCCCAAGAA 60 * * ****** **** ****************** *** *************** consensus_7274#0 AATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCCCCGTGTAA 114 consensus_7274#1 AATGGCTCTGTGGAATCAAAGAAATCTGGATCCGCCGGTAGTTTTGAATGCTCCGTGTAA 120 *************************************************** ******** consensus_7274#0 ATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAGCATGCTCAA 174 consensus_7274#1 ATCGAAACACATCAAGAGTCAAATTTCCGCTCTAACCAAAACAAGTACCAACATGCTCAA 180 ************************************************** ********* consensus_7274#0 CTACTACTCTACGCTGAACACGTTT-GAAAAGGCTGCCGCATTCGAGACGCGCTTCGTCA 233 consensus_7274#1 CTACTACTCTACGCTGAACTCGTTTTGAAAAGGCTGC-GCATTCGAGACGCGCTTTTGTC 239 ******************* ***** *********** ***************** consensus_7274#0 ATCGCTTCAAGTTCCGTTTGCGTAATATGCACGGCTTT-CAAGTTAT-GCGACGT-GTTA 290 consensus_7274#1 ATCGCTTCAAGTTCC-CGTGCGTAATATGCACGGCTTTTCAAGTTATCGCGACGTAGTTA 298 *************** ******************** ******** ******* **** consensus_7274#0 ACCAGACGCT-GATCCG-CATCAAAAA--CCTGGACCTGGTG-CAGGTT-ATTATGGATT 344 consensus_7274#1 ACCAGACGCTTGATCCGACATCAAGAAAGCTTGGANCTGGTTTCAGGTTCATTATGGACT 358 ********** ****** ****** ** * **** ***** ****** ******** * consensus_7274#0 TGCACAGC-------TTCCTGCCC-GAGTCGGAATACATCCCGCAGACGGTGAACTTGCC 396 consensus_7274#1 TATGCAACACGGCTTTCCTTGCCCCGAGTCGGGAAATTAC---AATTTGCCCGACATGTG 415 * ** * * * ***** ******* * * * * * ** ** consensus_7274#0 GGTACGATCCAACCTGGAGTATCTGCTGGTAAGAATGCAAGGATTGTGCAAGCTGCTGAT 456 consensus_7274#1 AGCCCGGTTGAAACTTNGGCG-CAGTTAACG-GACTCCAACCGTTGGG-AAGATAAT--- 469 * ** * ** ** * * * * ** * *** *** * *** * * consensus_7274#0 GCGTGTCGTCTACCTTACAAAGGAAGCCGCACGATTCCACGTGAAGCAAATAGTGAACAT 516 consensus_7274#1 -CTTGGCGTTAGGGTTGANAGAAATTGCACAGGGATTAG--------------------- 507 * ** *** ** * * * ** * * consensus_7274#0 GCATCTGTACCCTACGTACGTGATGTTTCTCGGCTTGATGGGCGAGCTGTGGCTGTTCTC 576 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 CCGCTCAGTATGCAGACGAACGGTGCAGTTCTACGACGAGCTGTATCCGGCCCTGGAGAT 636 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 TCTTCCCGAGACCAAGGTGAGCTGGTTACCGGAGCATTACCAGCTGCCGGTTAGCTTGGC 696 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 GGCATGGCTTGGCGAAGAGTATGAGCGTGATATTTTGCAATGCGGCGACGCAAACGGTGC 756 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 AACATCTAGCAATTGTGCTGGGATCGGAAGGGGATGCAGACCTTTTCACCCTGCTTCAGC 816 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 ACAGCACGACGGATGGGGAAGAGCAGTTACTATCGCGGAAACAGGAAACCGAGGCAGCCA 876 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 ACAAGAGTGTGGAGGAAGCGCTCACGGCGCCATCGTTCAGTTCCGTACCGAAAGCGATGC 936 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 TACTGCAGAGCCTGCGCTCCGATACCGGTGAGGTGGTGGAGAGGAAGGGACGGAATGCAC 996 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 CTGCGACGCAATTCGATGCCAAACAGCTCGACCACATACGCTCCAAGTTCCACGTGCAGC 1056 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 AGTTCCTGAAGCAGGAGCGAACCAATCGCACCGACAGCCCGGCGAAAGCGCTGACAAAAG 1116 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 GGCTTTCAGAGCAGCAGTTTGGTGATTTCAATGTACGCTTGATGAAGGAGTTCAACCGAC 1176 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 TTTCATCTGTGGAGTTTGTAAAGTTCTTCAAGGAACAGTTTCTACAGCTGGTTACAGAGG 1236 consensus_7274#1 ------------------------------------------------------------ consensus_7274#0 GCACGTGAGTGAATCGTGCATCGCTTCAATAAAGCAGAAACT 1278 consensus_7274#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||