These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1354 fasta sequence [CCGGCTGCTGTTATCGGTTCGTTCTGGGTGTTTGTGGTGCTGCGGTTCCTTACGGCCG-GGCCACTGGCGGTACTATGGTAACGAGCTTCGTTCTCGTGATGGAGATCATCGGCCCGAAGTGGCGCGAACTGTTCTCCGTGCTCTACCAGATCCCGTTCAACCTGGGCCATCTGACGCTGGCCGGTTTCGCCTACTTCCTGCGCGAGTGGCGCCAGCTGCAGTTCGCCCTGTCGATCTTCTCCGTGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGTCGGGCAATGTGGACG-GTGCGGTCACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATC-TACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTTCCTACCCGAAACGCAAGGCCATCCGCTGCCCGAGACGCTGGAGGATGGGGAAAACTTTGGCAAACGTCAGACGGCTGCCAACGGTGCGGCGGGTGTTGAGAATGGCAAGCACTAGGCTGGCGTTTGTGTGGGATGGGGAATGAGCTATGGTAGCATTTTTTTTTAGAATAGTGCAGTCAGTCCGTTCCTCTTTACCTCCGTTCGGATGTGACATTGCGGCACCTCTCGCTGTGCTGTGACAGTGCATTATCTCCCAAGGAACACTATGTGTTCAGTAGCTGCGGAGGAAAGGGAATGGTCGGAATGTGTCCTAATCGCTTATGAGCGTGGAAGCGAATAAATGTAAACGAGTTTTTTTTAAATATAAATTACCTCTTT] [+] EMBL BM628908 [CCGGCTGCTGTTATCGGTTCGTTCTGGGTGTTTGTGGTGCTGCGGTTCCTTACGGCCGTGGCCACTGGCGGTACTATGGTAACGAGCTTCGTTCTCGTGATGGAGATCATCGGCCCGAAGTGGCGCGAACTGTTCTCCGTGCTCTACCAGATCCCGTTCAACCTGGGCCATCTGACGCTGGCCGGTTTCGCCTACTTCCTGCGCGAGTGGCGCCAGCTGCAGTTCGCCCTGTCGATCTTCTCCGTGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGTCGGGCAATGTGGACG GTGCGGTCACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCAACGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATCTTACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCT ] [+] EMBL BM642024 [ CCG GGCCACTGGCGGTACTATGGTAACGAGCTTCGTTCTCGTGATGGAGATCATCGGCCCGAAGTGGCGCGAACTGTTCTCCGTGCTCTACCAGATCCCGTTCAACCTGGGCCATCTGACGCTGGCCGGTTTCGCCTACTTCCTGCGCGAGTGGCGCCAGCTGCAGTTCGCCCTGTCGATCTTCTCCGTGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGTCGGGCAATGTGGACG GTGCGGTAACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTG ] [+] EMBL BX617514 [ TGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGTCGGGCAATGTGGACG GTGCGGTCACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATC TACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTT ] [+] EMBL BM590945 [ ccgcGGACGCGTG GG CGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATC TACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTTCCTACCC ] [+] EMBL BM624850 [ ccgGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATC TACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTTCCTACCCGAAACGCAAGGCCATCCGCTGCCCGAGACGCTGGAGGATGGGGAAAACTTTGGCAAACGTCAGACGGCTGCCAACGGTGCGGCGGGTGTTGAGAATGGCAAGCACTAGGCTGGCGTTTGTGTGGGATGGGGAATGAGCTATGGTAGCATTTTTTTTTAGAATAGTGCAGTCA ] [+] EMBL BX628738 [ CTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCTTCCCCACCGTTTATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGGGCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGGGCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCGGTGCGTTCTGCGTCTTTTTCCTACCCGAAACGCAAGGCCATCCGCTGCCCGAGACGCTGGAGGATGGGGAAAACTTTGGCAAACGTCAGACGGCTGCCAACGGTGCGGCGGGTGTTGAGAATGGCAAGCACTAGGCTGGCGTTTGTGTGGGATGGGGAATGAGCTATGGTAGCATTTTTTTTTAGAATAGTGCAGTCAGTCCGTTCCTCTTTACCTCCGTTCGGATGTGACATTGCGGCACCTCTCGCTGTGCTGTGACAGTGCATTATCTCCCAAGGAACACTATGTGTTCAGTAGCTGCGGAGGAAAGGGAATGGTCGGAATGTGTCCTAATCGCTTATGAGCGTGGAAGCGAATAAATGTAAACGAGTTTTTTTTAAATATAAATTACCTCTTT] consensusID : consensus_7277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [GATCGCACGAGGTGGATGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATCTACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCGTTCCCCACCGNGTTGATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAAGT] [+] EMBL BX469633 [GATCGCACGAGGTGGATGCTGGAGCAGGCGGCCAAACGTAACAACCTGCCGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCATCGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCAAAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCCAGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCGAGCTGCCCGGCACGCTGCTGTGCATCTACATGATGAAGGCGTACGGGCGCAAGAAGACGCTCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCTCGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCGTTCCCCACCGNGTTGATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7277#0 CCGGCTGCTGTTATCGGTTCGTTCTGGGTGTTTGTGGTGCTGCGGTTCCTTACGGCCGGG 60 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 CCACTGGCGGTACTATGGTAACGAGCTTCGTTCTCGTGATGGAGATCATCGGCCCGAAGT 120 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 GGCGCGAACTGTTCTCCGTGCTCTACCAGATCCCGTTCAACCTGGGCCATCTGACGCTGG 180 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 CCGGTTTCGCCTACTTCCTGCGCGAGTGGCGCCAGCTGCAGTTCGCCCTGTCGATCTTCT 240 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 CCGTGCTGATGCTGTCGTACTACTGGCTGGTGCCGGAATCGCCCCGCTACCTGTTTACGT 300 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 CGGGCAATGTGGACGGTGCGGTCACGGTGCTGGAGCAGGCGGCCAAACGTAACAACCTGC 360 consensus_7277#1 -----------GATCGCACGAGGTGGATGCTGGAGCAGGCGGCCAAACGTAACAACCTGC 49 ** * ** * ********************************* consensus_7277#0 CGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCAT 420 consensus_7277#1 CGACCGACACCATCCGCAACGACATCGAGCAGTACGCGAAGGAGAAGACGCGCAACGCAT 109 ************************************************************ consensus_7277#0 CGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCA 480 consensus_7277#1 CGGCAAACGCGTCGAAGGGCAACGTGCTCGATCTGTTCCGCACGCCCAACATGCGCGCCA 169 ************************************************************ consensus_7277#0 AAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCC 540 consensus_7277#1 AAACGCTGTACATGTGCTTCAACTGGTTCGTGTGCGGGCTGGCGTTCTTCGGTGTGGCCC 229 ************************************************************ consensus_7277#0 AGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCG 600 consensus_7277#1 AGTACATCGGGCATGCCGGTGGCGATATCTACACGAACGTGGCGATCAGTGCGGCCCTCG 289 ************************************************************ consensus_7277#0 AGCTGCCCGGCACGCTGCTGTGCATCTACATGATGAAGGCGTACGGGCGCAAGAAGACGC 660 consensus_7277#1 AGCTGCCCGGCACGCTGCTGTGCATCTACATGATGAAGGCGTACGGGCGCAAGAAGACGC 349 ************************************************************ consensus_7277#0 TCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCT 720 consensus_7277#1 TCATCTTCTCGAACACGCTGACAGGCATCTCCATGCTGGCGATCGCGTTCGTACCCAGCT 409 ************************************************************ consensus_7277#0 CGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGC- 779 consensus_7277#1 CGGCCAGCGCACTGAACGTGGGCCTCGCCTCGGTCGGGCTGATCGGCATGAGCATCAGCG 469 *********************************************************** consensus_7277#0 TTCCCCACCGTTT--ATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAATGTGG 837 consensus_7277#1 TTCCCCACCGNGTTGATCTGTACGCGGGCGAGCTGTTCCCGACCGTGGTGCGCAA-GT-- 526 ********** * **************************************** ** consensus_7277#0 GCATCGGTACGGCATCGATGATTGCGCGGTTCGGCTCGATGATTGCACCGTTCGTGGCGG 897 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 GCATGGGCTCGATTGCGTACTGGCTGCCACCGTGCATCTTCGGGCTGGTACCGCTGGTCG 957 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 GTGCGTTCTGCGTCTTTTTCCTACCCGAAACGCAAGGCCATCCGCTGCCCGAGACGCTGG 1017 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 AGGATGGGGAAAACTTTGGCAAACGTCAGACGGCTGCCAACGGTGCGGCGGGTGTTGAGA 1077 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 ATGGCAAGCACTAGGCTGGCGTTTGTGTGGGATGGGGAATGAGCTATGGTAGCATTTTTT 1137 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 TTTAGAATAGTGCAGTCAGTCCGTTCCTCTTTACCTCCGTTCGGATGTGACATTGCGGCA 1197 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 CCTCTCGCTGTGCTGTGACAGTGCATTATCTCCCAAGGAACACTATGTGTTCAGTAGCTG 1257 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 CGGAGGAAAGGGAATGGTCGGAATGTGTCCTAATCGCTTATGAGCGTGGAAGCGAATAAA 1317 consensus_7277#1 ------------------------------------------------------------ consensus_7277#0 TGTAAACGAGTTTTTTTTAAATATAAATTACCTCTTT 1354 consensus_7277#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||