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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCGCGAGAACGAGCCAAAAACGGCGGCCCCCGGCTGTGCGGTAATGAGCAATAATCTCTGACAGATTTGTGTGTGTTTTCGCGTTGTGTGAAGGGGAGAGAGAAGGAAAAGGAGAATGTGGTGGGTGAGGTGTTCAAATGCAACTTGTTTGCATTGGCTCGACCGCCCCAGCCGCAGCAAAATTACACGCTACACCGAGTGCAAAGTGTAAATAAATACGGCACACGGGGCAGGGCAAGAGTGTAGTTCCGGCCTGCTTCTTCTTCTTCTTCTTCTTCTTTTATCTTCTATCAACGTGCTCAAGTGTGTCTGTGTCTGTGTCTAGCTGGTGTCCTTGAAGCAGGAAGACGGACCCCAAAAAGCCAAACCGGGAATGAGTAAACAACAAAAGCCTACTGCGAGACAAACAAAAAATCATGCGGGCATACTGAACTGTCAACCGGTTGAGAGCACACTCCAGCCAATCCTTTGTTTACATCCGTGTCATCCTCCCAAATGAAGAAGGCAAAAAGAAACTTCATTAATTAATAACCCTTTTCTTTCTTTTCCTTTTCCTTTTGTTGCAGAAATGATTGTAACCTTCTTTCCCGTGTTGTGCCGACTAGGGATGCTGTAGGACGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATACGCTACAATATCCCTTTTCTCGCTC]
[+] EMBL BM638129 [CCGCGAGAACGAGCCAAAAACGGCGGCCCCCGGCTGTGCGGTAATGAGCAATAATCTCTGACAGATTTGTGTGTGTTTTCGCGTTGTGTGAAGGGGAGAGAGAAGGAAAAGGAGAATGTGGTGGGTGAGGTGTTCAAATGCAACTTGTTTGCATTGGCTCGACCGCCCCAGCCGCAGCAAAATTACACGCTACACCGAGTGCAAAGTGTAAATAAATACGGCACACGGGGCAGGGCAAGAGTGTAGTTCCGGCCTGCTTCTTCTTCTTCTTCTTCTTCTTTTATCTTCTATCAACGTGCTCAAGTGTGTCTGTGTCTGTGTCTAGCTGGTGTCCTTGAAGCAGGAAGACGGACCCCAAAAAGCCAAACCGGGAATGAGTAAACAACAAAAGCCTACTGCGAGACAAACAAAAAATCATGCGGGCATACTGAACTGTCAACCGGTTGAGAGCACACTCCAGCCAATCCTTTGTTTACATCCGTGTCATCCTCCCAAATGAAGAAGGCAAAAAGAAACTTCATTAATTAATAACCCTTTTCTTTCTTTTCCTTTTCCTTTTGTTGCAGAAATGATTGTAACCTTCTTTCCCGTGTTGTGCCGACTAGGGATGCTGTAGGACGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATACGCTACAATATCCCTTTTCTCGCTC]
consensusID : consensus_728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[CCGCGCGTCGAACGAGGCGGATGTGTGCGCACTCTCCGGTAGTTGGTGTGGGAAACGCGCCACAAAAACATTTTTCGAGTACGTCTGATGATTGAAAGCTCGTAGGTGTTTTTTCGGCAGTTTAGGTCGCGGGCAGTACACATACACACATTTAGTACACAAATATACAATTCATATACGGTCCTTCACAACCTCTGCGCGCTCCCCCCCCCCCGCTCACAAACCCACATGCATACGAGATTAGGTTCGCGGCTAGACGACGACACAGTGCAAGCAAGGATTAGTGGTGGTGGTGGTGGTGGTGGTGGCCGTGGTTGCGGGAAAAGTGCCAGCGGTGTTAGGGGGAGTGACGGAGGCGGCAAAGGATTAACTCGTTCGTGGCAACAAGAGCGATGTCGTTGCTGCCGGTCGCGTGTTTGTTTATAAAAGGAAATGATTGTAACCTTCTTCCCGTGTTGTGCCGACTAGGGATGCTGTAGGCGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATACGCTACAATATCCCTTTCTCGCTCGGTTCCAATCCAACACACACACACCCAGGTTCCGGCCGGACGGATCGGGGGGAGGGAAAGGAAACCACAAAGAAAGGTAGAAAAAGAGTAAACCAGCAGCAGACAATCAA]
[+] EMBL BM618938 [CCGCGCGTCGAACGAGGCGGATGTGTGCGCACTCTCCGGTAGTTGGTGTGGGAAACGCGCCACAAAAACATTTTTCGAGTACGTCTGATGATTGAAAGCTCGTAGGTGTTTTTTCGGCAGTTTAGGTCGCGGGCAGTACACATACACACATTTAGTACACAAATATACAATTCATATACGGTCCTTCACAACCTCTGCGCGCTCCCCCCCCCCCGCTCACAAACCCACATGCATACGAGATTAGGTTCGCGGCTAGACGACGACACAGTGCAAGCAAGGATTAGTGGTGGTGGTGGTGGTGGTGGTGGCCGTGGTTGCGGGAAAAGTGCCAGCGGTGTTAGGGGGAGTGACGGAGGCGGCAAAGGATTAACTCGTTCGTGGCAACAAGAGCGATGTCGTTGCTGCCGGTCGCGTGTTTGTTTATAAAAGGAAATGATTGTAACCTTCTTCCCGTGTTGTGCCGACTAGGGATGCTGTAGGCGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATACGCTACAATATCCCTTTCTCGCTCGGTTCCAATCCAACACACACACACCCAGGTTCCGGCCGGACGGATCGGGGGGAGGGAAAGGAAACCACAAAGAAAGGTAGAAAAAGAGTAAACCAGCAGCAGACAATCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_728#0 CCGCGAGAACGAGCCAAAAACGGCGGCCCCCGGCTGTGCGGTAATGAGCAATAATCTCTG 60
consensus_728#1 -------------------------------------------CCGCGCGTCGAACGA-G 16
* ** * * *
consensus_728#0 ACAGATTTGTGTGTGTTTTCGCGTTGT--GTGAAGGGGAGAGAGAAGGAAAAGGAGAATG 118
consensus_728#1 GCGGATGTGTGCGCACTCTCCGGTAGTTGGTGTGGGAAACGCGCCACAAAAACATTTTTC 76
* *** **** * * ** ** ** *** ** * * **** *
consensus_728#0 TGGTGGGTGAGGTGTTCAAATGCAACTTGTTTGCATTGGCTCGACCGCCCCAGCCGCAGC 178
consensus_728#1 GAGTACGTCTGATGATTGAA---AGCTCGTAGGTGTTTTTTCGGCAGTTTAGGTCGCGG- 132
** ** * ** * ** * ** ** * ** *** * * * *** *
consensus_728#0 AAAATTACACGCTACACCGAGTGCAAAGTGTAAATAAATACGGCACACGGGGCAGGGCAA 238
consensus_728#1 -GCAGTACACA-TACACACATTT---AGTACACAAATATACAATTCATA----------- 176
* ***** ***** * * *** * * * **** **
consensus_728#0 GAGTGTAGTTCCGGCCTGCTTCTTCTTCTTCTTCTTCTTCTTTTATCTTCTATCAACGTG 298
consensus_728#1 ---TACGGTCCTTCACAACCTCTGCGCGCTCCCCCCCCCCCGCT--CACAAACCCACATG 231
* ** * * * *** * ** * * * * * * * ** **
consensus_728#0 CTCAAGTGTGTCTGTGTCTGTGTCTAGCTGGTGTCCTTGAAGCAGGAAGACGGACCCCAA 358
consensus_728#1 --CATACGAGATTAGGTTCGCGGCTAGACGACGACAC---AGTGCAAGCAAGGATTAGTG 286
** * * * ** * * **** * * * ** * * ***
consensus_728#0 AAAGCCAAACCGGGAATGAGTAAACAACAAAAGCCTACTGCGAGACAAACAAAAAATCAT 418
consensus_728#1 GTGGTGGTGGTGGTGGTG-GTGGCCG--------TGGTTGCGGGA-----AAAGTGCCA- 331
* ** ** ** * **** ** *** **
consensus_728#0 GCGGGCATACTGAACTGTCAACCGGTTGAGAGCACACTCCAGCCAATCCTTTGTTTACAT 478
consensus_728#1 GCGGTGTTAGGGGG------AGTGACGGAGG--------CGGCAAAGGATTAACT--CGT 375
**** ** * * * *** * ** ** ** * * *
consensus_728#0 CCGTGTCATCCTCCCAAATGAAGAAGGCAAAAAGAAACTTCATTAATTAATAACCCTTTT 538
consensus_728#1 TCGTGGCAAC-------------------AAGAGCGATGTCGTTG--------------- 401
**** ** * ** ** * ** **
consensus_728#0 CTTTCTTTTCCTTTTCCTTTTGTTGCAG-AAATGATTGTAACCTTCTTTCCCGTGTTGTG 597
consensus_728#1 CTGCCGGTCGCGTGTTTGTTTATAAAAGGAAATGATTGTAACCTTCTT-CCCGTGTTGTG 460
** * * * * * *** * ** ******************* ***********
consensus_728#0 CCGACTAGGGATGCTGTAGGACGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATA 657
consensus_728#1 CCGACTAGGGATGCTGTAGG-CGTGCGTGTGTGCCAGCCAGTACAACCAGATCCCGGATA 519
******************** ***************************************
consensus_728#0 CGCTACAATATCCCTTTTCTCGCTC----------------------------------- 682
consensus_728#1 CGCTACAATATCCCTTT-CTCGCTCGGTTCCAATCCAACACACACACACCCAGGTTCCGG 578
***************** *******
consensus_728#0 ------------------------------------------------------------
consensus_728#1 CCGGACGGATCGGGGGGAGGGAAAGGAAACCACAAAGAAAGGTAGAAAAAGAGTAAACCA 638
consensus_728#0 ---------------
consensus_728#1 GCAGCAGACAATCAA 653
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||